Wall clock time and date at job start Mon Mar 30 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.82285 * 2 1 4 4 C 1.54384 * 109.83080 * 239.10940 * 2 1 3 5 5 C 1.55304 * 102.25492 * 219.03796 * 4 2 1 6 6 H 1.09002 * 111.12488 * 152.05572 * 5 4 2 7 7 N 1.46500 * 111.12640 * 276.17566 * 5 4 2 8 8 C 1.34776 * 120.00270 * 270.09808 * 7 5 4 9 9 O 1.21283 * 119.99698 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00508 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47508 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47291 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99678 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47186 * 59.99876 * 16 14 12 18 18 H 1.48500 * 109.46922 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47068 * 299.99718 * 16 14 12 20 20 C 1.54944 * 100.97800 * 34.11596 * 5 4 2 21 21 H 1.08996 * 110.31114 * 82.48962 * 20 5 4 22 22 C 1.53005 * 110.30859 * 204.65983 * 20 5 4 23 23 O 1.43240 * 109.90408 * 120.93626 * 2 1 3 24 24 H 1.09005 * 109.46785 * 180.88543 * 1 2 3 25 25 H 1.08995 * 109.47068 * 300.88796 * 1 2 3 26 26 H 1.08997 * 109.46827 * 60.88911 * 1 2 3 27 27 H 1.09006 * 110.84230 * 100.84917 * 4 2 1 28 28 H 1.08993 * 111.02705 * 337.31158 * 4 2 1 29 29 H 0.97004 * 119.99791 * 90.10453 * 7 5 4 30 30 H 1.09000 * 109.46944 * 300.00523 * 10 8 7 31 31 H 1.09002 * 109.46627 * 59.99915 * 10 8 7 32 32 H 1.09003 * 109.46428 * 300.00143 * 11 10 8 33 33 H 1.08996 * 109.47036 * 59.99649 * 11 10 8 34 34 H 0.96997 * 119.99832 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.47043 * 60.00073 * 22 20 5 36 36 H 1.09001 * 109.47136 * 179.97438 * 22 20 5 37 37 H 1.09001 * 109.46859 * 299.99670 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0538 -0.7456 -1.2463 5 6 3.2745 -1.5198 -0.6785 6 1 3.4594 -2.4321 -1.2455 7 7 4.4685 -0.6716 -0.6450 8 6 5.2959 -0.6303 -1.7081 9 8 5.0516 -1.2950 -2.6927 10 6 6.5245 0.2416 -1.6735 11 6 7.2834 0.1063 -2.9950 12 6 8.5123 0.9778 -2.9601 13 1 8.7300 1.5694 -2.0831 14 6 9.3587 1.0199 -4.0477 15 7 9.0939 0.2992 -5.1154 16 14 10.8817 2.1008 -4.0046 17 1 11.7585 1.6763 -2.8839 18 1 11.6190 1.9685 -5.2868 19 1 10.4785 3.5166 -3.8088 20 6 2.7788 -1.8431 0.7535 21 1 2.1456 -2.7302 0.7434 22 6 3.9684 -2.0489 1.6934 23 8 2.0177 -0.6924 1.1552 24 1 -0.3633 -1.0276 0.0159 25 1 -0.3633 0.5275 0.8819 26 1 -0.3633 0.5000 -0.8978 27 1 2.3657 -0.0409 -2.0172 28 1 1.3035 -1.4347 -1.6338 29 1 4.6638 -0.1398 0.1425 30 1 6.2285 1.2808 -1.5295 31 1 7.1681 -0.0701 -0.8508 32 1 7.5793 -0.9328 -3.1392 33 1 6.6395 0.4183 -3.8173 34 1 9.6892 0.3291 -5.8806 35 1 4.5704 -1.1407 1.7219 36 1 3.6046 -2.2749 2.6958 37 1 4.5776 -2.8775 1.3323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601767283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:25 Heat of formation + Delta-G solvation = -126.843634 kcal Electronic energy + Delta-G solvation = -17543.236236 eV Core-core repulsion = 14704.795963 eV Total energy + Delta-G solvation = -2838.440273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48094 -39.91481 -35.72396 -35.46485 -33.64655 -33.13744 -31.71129 -29.58536 -27.66893 -25.14139 -23.95408 -22.21021 -21.54883 -21.16515 -18.86772 -18.09191 -17.66273 -16.64668 -16.56473 -16.49424 -16.15405 -15.25813 -15.16309 -14.70055 -14.20280 -14.10463 -13.86912 -13.55334 -13.23501 -13.10979 -13.00342 -12.77831 -12.71264 -12.51297 -12.20830 -11.93350 -11.91069 -11.81122 -11.63087 -11.32176 -10.79066 -10.56200 -10.52407 -10.07743 -8.17683 -6.31802 1.42538 1.46855 1.54600 1.68385 2.16728 2.44539 2.72203 3.15337 3.48489 3.62449 3.84580 4.00637 4.13216 4.21256 4.35977 4.40225 4.49141 4.55229 4.61003 4.67848 4.77443 4.83185 4.94947 5.01149 5.08048 5.16785 5.28144 5.29760 5.46668 5.53121 5.63336 5.85520 6.05481 6.17973 6.55923 6.86393 7.31668 7.38643 8.94740 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043327 B = 0.004389 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.088680 B = 6377.708394 C = 6503.439678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.078 3.922 3 H 0.078 0.922 4 C -0.160 4.160 5 C 0.105 3.895 6 H 0.091 0.909 7 N -0.707 5.707 8 C 0.515 3.485 9 O -0.585 6.585 10 C -0.120 4.120 11 C 0.043 3.957 12 C -0.545 4.545 13 H 0.075 0.925 14 C -0.005 4.005 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.263 1.263 20 C 0.079 3.921 21 H 0.098 0.902 22 C -0.150 4.150 23 O -0.385 6.385 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.413 0.587 30 H 0.102 0.898 31 H 0.104 0.896 32 H -0.017 1.017 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.069 -1.439 15.196 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.096 0.904 4 C -0.199 4.199 5 C 0.000 4.000 6 H 0.109 0.891 7 N -0.360 5.360 8 C 0.304 3.696 9 O -0.464 6.464 10 C -0.160 4.160 11 C 0.005 3.995 12 C -0.583 4.583 13 H 0.093 0.907 14 C -0.203 4.203 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.213 1.213 19 H -0.187 1.187 20 C 0.021 3.979 21 H 0.116 0.884 22 C -0.207 4.207 23 O -0.305 6.305 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.252 0.748 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.230 -1.890 14.555 21.151 hybrid contribution 0.856 0.447 -0.595 1.134 sum -14.373 -1.444 13.961 20.089 Atomic orbital electron populations 1.22103 0.93399 1.02988 1.02914 1.22744 0.95367 0.95977 0.83865 0.90445 1.23585 0.97630 1.00417 0.98277 1.22606 0.85074 0.94563 0.97804 0.89053 1.45855 1.24362 1.47435 1.18392 1.21300 0.84695 0.81582 0.82000 1.90656 1.75600 1.45587 1.34572 1.21641 0.93371 0.99783 1.01189 1.18676 0.93899 0.95109 0.91781 1.21689 1.08298 1.26584 1.01706 0.90681 1.26118 1.01968 0.97240 0.94956 1.70168 1.39404 1.42219 1.05948 0.85386 0.78316 0.79134 0.77485 1.18702 1.21320 1.18745 1.23290 0.93323 0.89958 0.91339 0.88434 1.21863 0.96325 1.02772 0.99776 1.88442 1.70603 1.40775 1.30673 0.91799 0.91643 0.90609 0.91402 0.88328 0.74847 0.87980 0.87748 0.99845 0.99945 0.92852 0.91828 0.90496 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.45 71.98 0.68 -1.69 16 2 C 0.08 1.49 4.15 31.06 0.13 1.62 16 3 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.16 -3.52 6.24 31.86 0.20 -3.32 16 5 C 0.11 2.52 3.14 46.45 0.15 2.67 16 6 H 0.09 2.51 7.64 -2.39 -0.02 2.49 16 7 N -0.71 -19.00 4.63 -435.66 -2.02 -21.02 16 8 C 0.52 19.60 7.83 87.66 0.69 20.29 16 9 O -0.58 -28.13 15.68 -3.04 -0.05 -28.17 16 10 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 11 C 0.04 2.39 4.26 29.85 0.13 2.52 16 12 C -0.54 -31.04 9.11 25.60 0.23 -30.80 16 13 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 14 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 15 N -0.94 -59.52 13.29 21.45 0.28 -59.23 16 16 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 C 0.08 1.46 3.94 31.26 0.12 1.58 16 21 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 22 C -0.15 -2.48 9.20 71.98 0.66 -1.81 16 23 O -0.38 -7.93 10.71 -148.98 -1.60 -9.52 16 24 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.10 1.87 7.86 -2.39 -0.02 1.85 16 29 H 0.41 8.95 7.08 -92.71 -0.66 8.29 16 30 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 32 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 33 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 34 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.06 1.06 6.50 -2.39 -0.02 1.04 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.89 306.33 2.65 -71.24 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.39 Total: 13.87 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 3.62 Total: -13.42 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -1.73 Total: -80.25 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.64 Total: -37.70 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -73.89 2.65 -71.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601767283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.608 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds