Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.33310 * 2 1 4 4 C 1.54484 * 110.37352 * 237.75280 * 2 1 3 5 5 C 1.54505 * 104.06420 * 265.15020 * 4 2 1 6 6 H 1.08994 * 110.51543 * 118.77918 * 5 4 2 7 7 C 1.52999 * 110.51087 * 241.35584 * 5 4 2 8 8 N 1.46505 * 109.46844 * 294.45073 * 7 5 4 9 9 C 1.46497 * 119.99731 * 95.24927 * 8 7 5 10 10 C 1.34777 * 120.00239 * 275.24812 * 8 7 5 11 11 O 1.21684 * 119.99735 * 354.90522 * 10 8 7 12 12 C 1.46367 * 119.99953 * 175.18143 * 10 8 7 13 13 H 1.08000 * 120.00373 * 4.78021 * 12 10 8 14 14 C 1.40058 * 119.99980 * 184.78360 * 12 10 8 15 15 N 1.30670 * 119.99481 * 5.16425 * 14 12 10 16 16 Si 1.86796 * 119.99883 * 185.16739 * 14 12 10 17 17 H 1.48498 * 109.47246 * 95.00288 * 16 14 12 18 18 H 1.48507 * 109.46922 * 214.99839 * 16 14 12 19 19 H 1.48498 * 109.47498 * 334.99559 * 16 14 12 20 20 C 1.54479 * 104.06115 * 359.97438 * 5 4 2 21 21 H 1.09006 * 110.36846 * 94.85542 * 20 5 4 22 22 C 1.53001 * 110.37541 * 217.18814 * 20 5 4 23 23 O 1.44421 * 104.80622 * 336.02567 * 20 5 4 24 24 H 1.08998 * 109.47429 * 182.24773 * 1 2 3 25 25 H 1.08994 * 109.47556 * 302.24946 * 1 2 3 26 26 H 1.09008 * 109.47283 * 62.24614 * 1 2 3 27 27 H 1.09003 * 110.51387 * 146.50069 * 4 2 1 28 28 H 1.09007 * 110.62339 * 23.84851 * 4 2 1 29 29 H 1.09008 * 109.47253 * 174.45499 * 7 5 4 30 30 H 1.08992 * 109.47283 * 54.44937 * 7 5 4 31 31 H 1.09002 * 109.47169 * 269.99900 * 9 8 7 32 32 H 1.08997 * 109.47531 * 29.99568 * 9 8 7 33 33 H 1.09000 * 109.47173 * 150.00111 * 9 8 7 34 34 H 0.97001 * 119.99332 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.46551 * 60.00319 * 22 20 5 36 36 H 1.08993 * 109.47429 * 180.02562 * 22 20 5 37 37 H 1.08999 * 109.47069 * 300.00757 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7727 -1.2248 5 6 2.3173 -2.2000 -0.6884 6 1 1.6997 -2.9221 -1.2223 7 6 3.7973 -2.5678 -0.8112 8 7 4.1664 -2.6410 -2.2271 9 6 4.7655 -1.4794 -2.8889 10 6 3.9546 -3.7769 -2.9209 11 8 3.5438 -4.7703 -2.3508 12 6 4.2247 -3.8173 -4.3589 13 1 4.6659 -2.9624 -4.8498 14 6 3.9108 -4.9646 -5.0984 15 7 3.2856 -5.9595 -4.5268 16 14 4.3861 -5.0724 -6.9017 17 1 5.6870 -5.7771 -7.0294 18 1 3.3418 -5.8224 -7.6448 19 1 4.5073 -3.7035 -7.4644 20 6 1.9013 -2.1206 0.7972 21 1 0.8681 -2.4458 0.9198 22 6 2.8350 -2.9738 1.6582 23 8 2.0335 -0.7248 1.1435 24 1 -0.3634 -1.0268 0.0403 25 1 -0.3634 0.5483 0.8691 26 1 -0.3634 0.4786 -0.9095 27 1 2.9988 -0.3291 -1.5777 28 1 1.3267 -0.7892 -2.0241 29 1 3.9717 -3.5351 -0.3398 30 1 4.4027 -1.8082 -0.3168 31 1 3.9781 -0.8573 -3.3142 32 1 5.3334 -0.8996 -2.1613 33 1 5.4309 -1.8171 -3.6835 34 1 3.0679 -6.7539 -5.0391 35 1 3.8574 -2.6098 1.5556 36 1 2.5285 -2.9076 2.7020 37 1 2.7844 -4.0119 1.3300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686391177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -89.252567 kcal Electronic energy + Delta-G solvation = -18358.462070 eV Core-core repulsion = 15521.651868 eV Total energy + Delta-G solvation = -2836.810202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85714 -37.48740 -34.25911 -32.52631 -32.44450 -31.86734 -28.67998 -27.08875 -25.98043 -24.32578 -23.80481 -20.70826 -19.98616 -18.69451 -16.43417 -16.07244 -15.80881 -15.57048 -14.80827 -14.49442 -14.04219 -13.98314 -13.36744 -12.83166 -12.49209 -12.32021 -12.09298 -11.97378 -11.70649 -11.59131 -11.46283 -11.35862 -11.16263 -11.00130 -10.72401 -10.45630 -10.35822 -10.23376 -10.10691 -10.02049 -9.46093 -8.85365 -7.57468 -7.16879 -6.21623 -4.64030 3.12441 3.19985 3.22910 4.05757 4.11103 4.53822 4.60679 4.87716 5.07795 5.13445 5.25890 5.39475 5.45440 5.60051 5.62353 5.75841 5.85907 5.86581 5.92626 6.04731 6.10439 6.16776 6.23662 6.26169 6.33870 6.40458 6.51175 6.54809 6.61270 6.73249 7.16438 7.44085 7.65606 8.15349 8.37188 9.02184 9.43955 10.57512 10.76383 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.006317 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.162256 B = 4431.634921 C = 4630.602528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.128 4.128 6 H 0.087 0.913 7 C 0.139 3.861 8 N -0.648 5.648 9 C 0.103 3.897 10 C 0.558 3.442 11 O -0.578 6.578 12 C -0.545 4.545 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.077 3.923 21 H 0.063 0.937 22 C -0.147 4.147 23 O -0.372 6.372 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.268 0.732 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 10.186 5.949 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.149 4.149 6 H 0.105 0.895 7 C 0.015 3.985 8 N -0.386 5.386 9 C -0.041 4.041 10 C 0.364 3.636 11 O -0.461 6.461 12 C -0.581 4.581 13 H 0.089 0.911 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C 0.019 3.981 21 H 0.081 0.919 22 C -0.204 4.204 23 O -0.291 6.291 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.397 9.530 6.438 11.748 hybrid contribution 0.028 0.014 -1.227 1.227 sum -2.369 9.544 5.211 11.129 Atomic orbital electron populations 1.22266 0.96113 1.02587 1.01974 1.22964 0.93418 0.96539 0.85959 0.88822 1.23033 1.01910 0.95435 0.97386 1.22943 1.00178 0.97057 0.94702 0.89481 1.21114 0.91992 1.00824 0.84573 1.47981 1.67169 1.14388 1.09060 1.21414 0.96839 0.88714 0.97174 1.18212 0.77535 0.80211 0.87631 1.90581 1.50712 1.33824 1.70995 1.21030 1.43945 1.01333 0.91840 0.91055 1.25724 0.92920 0.94936 0.99552 1.70006 1.28831 1.04473 1.36423 0.86402 0.78782 0.79011 0.82832 1.19782 1.20484 1.18892 1.22956 0.98611 0.82365 0.94147 0.91868 1.21861 0.99909 0.99710 0.98963 1.89108 1.84136 1.17334 1.38545 0.92181 0.92325 0.91698 0.90468 0.90989 0.90793 0.92645 0.95094 0.94185 0.91287 0.92142 0.91493 0.92658 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.32 37.15 0.35 -1.69 16 2 C 0.07 0.93 4.21 -25.95 -0.11 0.82 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.14 -2.16 6.00 -25.16 -0.15 -2.31 16 5 C -0.13 -2.30 3.26 -89.05 -0.29 -2.59 16 6 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 7 C 0.14 2.73 3.52 -4.04 -0.01 2.71 16 8 N -0.65 -14.61 2.74 -183.25 -0.50 -15.11 16 9 C 0.10 1.90 8.81 59.85 0.53 2.43 16 10 C 0.56 15.72 7.55 -12.99 -0.10 15.62 16 11 O -0.58 -18.39 14.71 5.20 0.08 -18.32 16 12 C -0.54 -15.20 8.73 -35.63 -0.31 -15.52 16 13 H 0.07 1.83 6.07 -52.49 -0.32 1.51 16 14 C 0.09 2.45 5.49 -17.36 -0.10 2.35 16 15 N -0.77 -22.86 11.87 55.55 0.66 -22.20 16 16 Si 0.91 20.01 29.56 -169.99 -5.03 14.99 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 20 C 0.08 1.20 3.42 -25.95 -0.09 1.11 16 21 H 0.06 0.95 7.23 -51.93 -0.38 0.57 16 22 C -0.15 -2.14 8.36 37.16 0.31 -1.83 16 23 O -0.37 -5.78 11.10 -35.23 -0.39 -6.17 16 24 H 0.06 0.76 6.94 -51.93 -0.36 0.39 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.08 1.19 5.67 -51.93 -0.29 0.89 16 28 H 0.07 1.11 7.87 -51.92 -0.41 0.70 16 29 H 0.07 1.58 6.05 -51.92 -0.31 1.27 16 30 H 0.06 0.97 7.43 -51.93 -0.39 0.58 16 31 H 0.03 0.54 7.41 -51.93 -0.38 0.15 16 32 H 0.04 0.62 7.86 -51.93 -0.41 0.21 16 33 H 0.07 1.32 6.25 -51.93 -0.32 0.99 16 34 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 35 H 0.07 0.97 6.69 -51.93 -0.35 0.62 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -32.96 292.18 -6.32 -39.29 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.57 Total: 2.00 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 0.03 Total: 1.13 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.16 Total: -37.31 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.31 Total: -24.49 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.96 -6.32 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686391177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.967 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds