Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.33310 * 2 1 4 4 C 1.54484 * 110.37352 * 237.75280 * 2 1 3 5 5 C 1.54505 * 104.06420 * 265.15020 * 4 2 1 6 6 H 1.08994 * 110.51543 * 118.77918 * 5 4 2 7 7 C 1.52999 * 110.51087 * 241.35584 * 5 4 2 8 8 N 1.46505 * 109.46844 * 294.45073 * 7 5 4 9 9 C 1.46497 * 119.99731 * 95.24927 * 8 7 5 10 10 C 1.34777 * 120.00239 * 275.24812 * 8 7 5 11 11 O 1.21684 * 119.99735 * 354.90522 * 10 8 7 12 12 C 1.46367 * 119.99953 * 175.18143 * 10 8 7 13 13 H 1.08000 * 120.00373 * 4.78021 * 12 10 8 14 14 C 1.40058 * 119.99980 * 184.78360 * 12 10 8 15 15 N 1.30670 * 119.99481 * 5.16425 * 14 12 10 16 16 Si 1.86796 * 119.99883 * 185.16739 * 14 12 10 17 17 H 1.48498 * 109.47246 * 95.00288 * 16 14 12 18 18 H 1.48507 * 109.46922 * 214.99839 * 16 14 12 19 19 H 1.48498 * 109.47498 * 334.99559 * 16 14 12 20 20 C 1.54479 * 104.06115 * 359.97438 * 5 4 2 21 21 H 1.09006 * 110.36846 * 94.85542 * 20 5 4 22 22 C 1.53001 * 110.37541 * 217.18814 * 20 5 4 23 23 O 1.44421 * 104.80622 * 336.02567 * 20 5 4 24 24 H 1.08998 * 109.47429 * 182.24773 * 1 2 3 25 25 H 1.08994 * 109.47556 * 302.24946 * 1 2 3 26 26 H 1.09008 * 109.47283 * 62.24614 * 1 2 3 27 27 H 1.09003 * 110.51387 * 146.50069 * 4 2 1 28 28 H 1.09007 * 110.62339 * 23.84851 * 4 2 1 29 29 H 1.09008 * 109.47253 * 174.45499 * 7 5 4 30 30 H 1.08992 * 109.47283 * 54.44937 * 7 5 4 31 31 H 1.09002 * 109.47169 * 269.99900 * 9 8 7 32 32 H 1.08997 * 109.47531 * 29.99568 * 9 8 7 33 33 H 1.09000 * 109.47173 * 150.00111 * 9 8 7 34 34 H 0.97001 * 119.99332 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.46551 * 60.00319 * 22 20 5 36 36 H 1.08993 * 109.47429 * 180.02562 * 22 20 5 37 37 H 1.08999 * 109.47069 * 300.00757 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7727 -1.2248 5 6 2.3173 -2.2000 -0.6884 6 1 1.6997 -2.9221 -1.2223 7 6 3.7973 -2.5678 -0.8112 8 7 4.1664 -2.6410 -2.2271 9 6 4.7655 -1.4794 -2.8889 10 6 3.9546 -3.7769 -2.9209 11 8 3.5438 -4.7703 -2.3508 12 6 4.2247 -3.8173 -4.3589 13 1 4.6659 -2.9624 -4.8498 14 6 3.9108 -4.9646 -5.0984 15 7 3.2856 -5.9595 -4.5268 16 14 4.3861 -5.0724 -6.9017 17 1 5.6870 -5.7771 -7.0294 18 1 3.3418 -5.8224 -7.6448 19 1 4.5073 -3.7035 -7.4644 20 6 1.9013 -2.1206 0.7972 21 1 0.8681 -2.4458 0.9198 22 6 2.8350 -2.9738 1.6582 23 8 2.0335 -0.7248 1.1435 24 1 -0.3634 -1.0268 0.0403 25 1 -0.3634 0.5483 0.8691 26 1 -0.3634 0.4786 -0.9095 27 1 2.9988 -0.3291 -1.5777 28 1 1.3267 -0.7892 -2.0241 29 1 3.9717 -3.5351 -0.3398 30 1 4.4027 -1.8082 -0.3168 31 1 3.9781 -0.8573 -3.3142 32 1 5.3334 -0.8996 -2.1613 33 1 5.4309 -1.8171 -3.6835 34 1 3.0679 -6.7539 -5.0391 35 1 3.8574 -2.6098 1.5556 36 1 2.5285 -2.9076 2.7020 37 1 2.7844 -4.0119 1.3300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686391177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -111.735925 kcal Electronic energy + Delta-G solvation = -18359.437021 eV Core-core repulsion = 15521.651868 eV Total energy + Delta-G solvation = -2837.785154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17743 -39.38424 -36.09877 -34.58644 -33.83954 -33.17920 -29.93157 -28.77180 -27.77526 -25.84391 -25.25872 -21.98072 -21.56062 -20.35490 -18.38229 -17.63196 -17.44057 -16.99408 -16.20162 -16.06807 -15.72782 -15.55661 -14.80112 -14.35264 -13.90849 -13.57088 -13.53667 -13.36754 -13.19961 -13.14013 -13.05747 -12.81528 -12.75360 -12.68617 -12.28554 -12.03061 -11.94850 -11.69528 -11.58225 -11.46545 -10.92392 -10.66652 -9.75813 -9.02252 -8.29549 -6.81853 1.39270 1.40451 1.55811 2.23858 2.47155 2.81589 2.98723 3.59225 3.65797 3.81930 3.93666 4.09962 4.12834 4.29150 4.38967 4.46085 4.52952 4.59523 4.65173 4.79322 4.81113 4.85625 4.96603 5.02247 5.04537 5.09339 5.15962 5.20579 5.26175 5.33663 5.37793 5.78762 5.94598 6.16741 6.44942 6.89303 7.44614 8.49568 8.68848 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.006317 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.162256 B = 4431.634921 C = 4630.602528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.120 0.880 4 C -0.136 4.136 5 C -0.127 4.127 6 H 0.042 0.958 7 C 0.141 3.859 8 N -0.649 5.649 9 C 0.099 3.901 10 C 0.541 3.459 11 O -0.630 6.630 12 C -0.570 4.570 13 H 0.091 0.909 14 C 0.030 3.970 15 N -0.823 5.823 16 Si 0.993 3.007 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.246 1.246 20 C 0.084 3.916 21 H 0.068 0.932 22 C -0.144 4.144 23 O -0.376 6.376 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.273 0.727 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 12.626 5.340 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.137 0.863 4 C -0.174 4.174 5 C -0.148 4.148 6 H 0.061 0.939 7 C 0.018 3.982 8 N -0.385 5.385 9 C -0.044 4.044 10 C 0.347 3.653 11 O -0.518 6.518 12 C -0.607 4.607 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.453 5.453 16 Si 0.813 3.187 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.169 1.169 20 C 0.025 3.975 21 H 0.086 0.914 22 C -0.202 4.202 23 O -0.296 6.296 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.877 12.040 5.849 13.517 hybrid contribution -0.129 -0.690 -0.970 1.197 sum -2.005 11.350 4.879 12.516 Atomic orbital electron populations 1.22256 0.94876 1.02156 1.03430 1.23138 0.94465 0.97024 0.84057 0.86253 1.23012 1.02233 0.93858 0.98290 1.22789 0.98036 0.97616 0.96336 0.93939 1.21205 0.93669 1.00372 0.82967 1.47848 1.66429 1.14161 1.10070 1.21609 0.97337 0.87524 0.97888 1.18590 0.77222 0.81016 0.88450 1.90532 1.52943 1.36223 1.72059 1.21544 1.44329 1.02532 0.92255 0.89083 1.26962 0.92108 0.94043 1.05413 1.70179 1.30428 1.05525 1.39152 0.85075 0.78472 0.79883 0.75311 1.18990 1.19866 1.16946 1.22856 0.99012 0.83062 0.92532 0.91448 1.21822 0.99760 0.98594 0.99977 1.89102 1.84434 1.16845 1.39239 0.93582 0.90895 0.90249 0.89936 0.91386 0.93448 0.89767 0.93696 0.90536 0.92029 0.91713 0.91471 0.90540 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.32 71.98 0.67 -2.95 16 2 C 0.07 1.72 4.21 31.10 0.13 1.85 16 3 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 4 C -0.14 -4.02 6.00 31.61 0.19 -3.83 16 5 C -0.13 -4.62 3.26 -9.78 -0.03 -4.65 16 6 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 7 C 0.14 5.58 3.52 86.38 0.30 5.88 16 8 N -0.65 -29.39 2.74 -851.90 -2.33 -31.72 16 9 C 0.10 3.48 8.81 127.77 1.13 4.61 16 10 C 0.54 31.45 7.55 86.36 0.65 32.10 16 11 O -0.63 -42.26 14.71 -4.30 -0.06 -42.32 16 12 C -0.57 -32.16 8.73 24.83 0.22 -31.95 16 13 H 0.09 4.60 6.07 -2.91 -0.02 4.58 16 14 C 0.03 1.65 5.49 85.31 0.47 2.12 16 15 N -0.82 -50.61 11.87 21.84 0.26 -50.35 16 16 Si 0.99 40.95 29.56 68.60 2.03 42.98 16 17 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 20 C 0.08 2.57 3.42 31.10 0.11 2.67 16 21 H 0.07 2.02 7.23 -2.38 -0.02 2.00 16 22 C -0.14 -4.16 8.36 71.98 0.60 -3.56 16 23 O -0.38 -10.85 11.10 -148.98 -1.65 -12.50 16 24 H 0.05 1.11 6.94 -2.39 -0.02 1.09 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.08 2.33 5.67 -2.39 -0.01 2.31 16 28 H 0.07 2.05 7.87 -2.38 -0.02 2.03 16 29 H 0.05 2.11 6.05 -2.38 -0.01 2.10 16 30 H 0.08 2.81 7.43 -2.39 -0.02 2.79 16 31 H 0.04 1.46 7.41 -2.39 -0.02 1.44 16 32 H 0.08 2.12 7.86 -2.39 -0.02 2.10 16 33 H 0.06 2.25 6.25 -2.39 -0.01 2.23 16 34 H 0.27 15.23 8.29 -92.71 -0.77 14.47 16 35 H 0.07 1.90 6.69 -2.39 -0.02 1.89 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.92 7.73 -2.39 -0.02 1.91 16 Total: -1.00 -74.23 292.18 3.73 -70.50 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 1.05 Total: 21.12 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.43 Total: 2.30 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.07 Total: -82.08 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.72 Total: -54.82 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -74.23 3.73 -70.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686391177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.232 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds