Wall clock time and date at job start Mon Mar 30 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.85602 * 2 1 4 4 C 1.54628 * 110.96907 * 236.21566 * 2 1 3 5 5 C 1.51275 * 104.19635 * 217.04501 * 4 2 1 6 6 O 1.21281 * 124.94615 * 196.23224 * 5 4 2 7 7 N 1.34424 * 110.11780 * 16.25019 * 5 4 2 8 8 C 1.46500 * 124.35300 * 180.14254 * 7 5 4 9 9 C 1.53000 * 109.46858 * 90.02712 * 8 7 5 10 10 O 1.42891 * 109.47714 * 64.99878 * 9 8 7 11 11 C 1.42899 * 114.00525 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47485 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99702 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00106 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00035 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99844 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47191 * 60.00038 * 16 14 12 18 18 H 1.48501 * 109.46873 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47372 * 300.00088 * 16 14 12 20 20 C 1.46768 * 111.29731 * 0.40742 * 7 5 4 21 21 H 1.09003 * 110.24577 * 101.98147 * 20 7 5 22 22 C 1.52999 * 110.24578 * 223.98144 * 20 7 5 23 23 H 1.08995 * 109.47176 * 182.33372 * 1 2 3 24 24 H 1.09005 * 109.46913 * 302.33534 * 1 2 3 25 25 H 1.08997 * 109.47506 * 62.32882 * 1 2 3 26 26 H 1.09002 * 110.48704 * 98.36808 * 4 2 1 27 27 H 1.09006 * 110.48485 * 335.72280 * 4 2 1 28 28 H 1.08996 * 109.46993 * 210.02517 * 8 7 5 29 29 H 1.09000 * 109.47041 * 330.02307 * 8 7 5 30 30 H 1.09005 * 109.46869 * 185.00551 * 9 8 7 31 31 H 1.09006 * 109.47205 * 304.99419 * 9 8 7 32 32 H 1.08998 * 109.47297 * 300.00428 * 11 10 9 33 33 H 1.08997 * 109.46459 * 60.00239 * 11 10 9 34 34 H 0.96996 * 119.99848 * 179.97438 * 15 14 12 35 35 H 1.09007 * 109.46842 * 58.55179 * 22 20 7 36 36 H 1.09000 * 109.46954 * 178.54747 * 22 20 7 37 37 H 1.08995 * 109.47079 * 298.54822 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0187 0.0000 4 6 2.0834 -0.8029 -1.2001 5 6 3.3092 -1.4969 -0.6485 6 8 4.1851 -1.9984 -1.3209 7 7 3.2862 -1.4773 0.6954 8 6 4.3248 -2.0600 1.5485 9 6 5.3957 -1.0068 1.8398 10 8 4.8247 0.0529 2.6097 11 6 5.7462 1.0946 2.9383 12 6 5.0408 2.1527 3.7468 13 1 3.9936 2.0408 3.9862 14 6 5.7323 3.2638 4.1810 15 7 7.0075 3.3998 3.8899 16 14 4.8577 4.5757 5.1826 17 1 4.3266 3.9730 6.4316 18 1 5.8153 5.6581 5.5241 19 1 3.7360 5.1388 4.3889 20 6 2.0837 -0.8026 1.1982 21 1 1.3504 -1.5371 1.5313 22 6 2.4473 0.1420 2.3456 23 1 -0.3633 -1.0268 0.0418 24 1 -0.3633 0.5497 0.8684 25 1 -0.3634 0.4772 -0.9101 26 1 2.3587 -0.1318 -2.0137 27 1 1.3507 -1.5351 -1.5395 28 1 3.8799 -2.3946 2.4856 29 1 4.7796 -2.9093 1.0387 30 1 6.2119 -1.4637 2.3996 31 1 5.7783 -0.6080 0.9002 32 1 6.5693 0.6811 3.5210 33 1 6.1362 1.5370 2.0217 34 1 7.4939 4.1816 4.1950 35 1 3.1734 0.8759 1.9957 36 1 1.5501 0.6551 2.6919 37 1 2.8773 -0.4320 3.1663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:24 Heat of formation + Delta-G solvation = -89.881522 kcal Electronic energy + Delta-G solvation = -18227.001204 eV Core-core repulsion = 15390.163728 eV Total energy + Delta-G solvation = -2836.837475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41923 -37.01533 -36.51794 -33.80379 -32.63105 -30.19452 -29.76021 -27.43164 -26.45940 -23.30143 -22.56072 -22.13667 -20.62107 -19.00355 -16.65875 -16.55222 -16.02035 -15.52915 -14.98380 -14.63052 -14.28151 -14.16172 -13.74753 -13.50103 -13.22363 -12.67582 -12.46211 -12.05543 -11.93622 -11.71139 -11.63938 -11.28645 -11.18379 -10.90505 -10.85678 -10.78396 -10.48036 -10.31928 -9.90626 -9.51949 -9.06305 -8.80609 -8.40881 -8.16343 -6.13137 -4.15396 2.80657 3.28043 3.28338 3.32259 3.34722 4.30794 4.47834 4.51765 4.77990 4.87867 5.12177 5.23340 5.42302 5.43655 5.50005 5.56015 5.63514 5.66150 5.73033 5.91705 5.97147 5.98413 6.06077 6.23114 6.25721 6.36650 6.62104 6.88668 7.10208 7.27988 7.41966 7.46681 7.75309 8.12591 8.41784 8.52820 8.96923 9.49480 10.98374 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.006680 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.314902 B = 4190.322705 C = 4814.845971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.151 4.151 5 C 0.514 3.486 6 O -0.547 6.547 7 N -0.601 5.601 8 C 0.131 3.869 9 C 0.039 3.961 10 O -0.379 6.379 11 C 0.190 3.810 12 C -0.513 4.513 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.135 3.865 21 H 0.070 0.930 22 C -0.152 4.152 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.946 -7.950 -5.631 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.113 0.887 4 C -0.191 4.191 5 C 0.302 3.698 6 O -0.425 6.425 7 N -0.334 5.334 8 C 0.009 3.991 9 C -0.039 4.039 10 O -0.299 6.299 11 C 0.116 3.884 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.031 3.969 21 H 0.088 0.912 22 C -0.209 4.209 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.459 -8.118 -5.828 15.205 hybrid contribution 0.109 0.801 0.533 0.968 sum -11.350 -7.317 -5.295 14.506 Atomic orbital electron populations 1.21740 0.93559 1.01956 1.02350 1.22281 0.96457 1.00170 0.93305 0.88671 1.22434 0.96791 1.00487 0.99388 1.20886 0.87239 0.79153 0.82525 1.90685 1.40776 1.48080 1.62948 1.48360 1.22487 1.56447 1.06147 1.21429 0.88328 0.94938 0.94399 1.22668 0.94979 0.90555 0.95711 1.88170 1.37323 1.32370 1.72007 1.20186 0.88985 0.84668 0.94610 1.21004 0.97293 1.03612 1.33202 0.91474 1.24959 0.94908 0.98228 0.96419 1.69955 1.08164 1.29430 1.46097 0.86443 0.79185 0.80723 0.80390 1.20063 1.21215 1.20040 1.21851 0.85462 0.94226 0.95320 0.91192 1.22324 1.01051 1.00286 0.97244 0.92538 0.91835 0.92142 0.88445 0.88286 0.89865 0.89593 0.93503 0.94166 0.97949 0.97969 0.92614 0.88479 0.93247 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.13 37.16 0.34 -0.86 16 2 C -0.10 -1.19 3.25 -88.99 -0.29 -1.48 16 3 H 0.09 1.21 7.91 -51.92 -0.41 0.80 16 4 C -0.15 -1.81 6.42 -26.75 -0.17 -1.98 16 5 C 0.51 8.36 8.02 -10.86 -0.09 8.28 16 6 O -0.55 -10.84 17.59 5.56 0.10 -10.74 16 7 N -0.60 -9.29 2.79 -164.89 -0.46 -9.75 16 8 C 0.13 2.01 5.86 -4.04 -0.02 1.99 16 9 C 0.04 0.73 6.28 37.16 0.23 0.97 16 10 O -0.38 -8.29 4.86 -35.23 -0.17 -8.46 16 11 C 0.19 5.01 5.69 36.00 0.20 5.21 16 12 C -0.51 -14.31 9.30 -34.44 -0.32 -14.63 16 13 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 16 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.13 1.79 3.48 -67.01 -0.23 1.56 16 21 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 22 C -0.15 -2.43 7.36 37.16 0.27 -2.15 16 23 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 0.98 7.90 -51.93 -0.41 0.57 16 28 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 29 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.10 1.92 6.15 -51.92 -0.32 1.60 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.26 6.39 -51.93 -0.33 0.93 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -31.67 301.01 -6.50 -38.18 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.05 Total: -2.58 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.17 Total: -1.60 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.28 Total: -35.59 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.07 Total: -19.21 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.67 -6.50 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.705 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds