Wall clock time and date at job start Mon Mar 30 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.85602 * 2 1 4 4 C 1.54628 * 110.96907 * 236.21566 * 2 1 3 5 5 C 1.51275 * 104.19635 * 217.04501 * 4 2 1 6 6 O 1.21281 * 124.94615 * 196.23224 * 5 4 2 7 7 N 1.34424 * 110.11780 * 16.25019 * 5 4 2 8 8 C 1.46500 * 124.35300 * 180.14254 * 7 5 4 9 9 C 1.53000 * 109.46858 * 90.02712 * 8 7 5 10 10 O 1.42891 * 109.47714 * 64.99878 * 9 8 7 11 11 C 1.42899 * 114.00525 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47485 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99702 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00106 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00035 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99844 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47191 * 60.00038 * 16 14 12 18 18 H 1.48501 * 109.46873 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47372 * 300.00088 * 16 14 12 20 20 C 1.46768 * 111.29731 * 0.40742 * 7 5 4 21 21 H 1.09003 * 110.24577 * 101.98147 * 20 7 5 22 22 C 1.52999 * 110.24578 * 223.98144 * 20 7 5 23 23 H 1.08995 * 109.47176 * 182.33372 * 1 2 3 24 24 H 1.09005 * 109.46913 * 302.33534 * 1 2 3 25 25 H 1.08997 * 109.47506 * 62.32882 * 1 2 3 26 26 H 1.09002 * 110.48704 * 98.36808 * 4 2 1 27 27 H 1.09006 * 110.48485 * 335.72280 * 4 2 1 28 28 H 1.08996 * 109.46993 * 210.02517 * 8 7 5 29 29 H 1.09000 * 109.47041 * 330.02307 * 8 7 5 30 30 H 1.09005 * 109.46869 * 185.00551 * 9 8 7 31 31 H 1.09006 * 109.47205 * 304.99419 * 9 8 7 32 32 H 1.08998 * 109.47297 * 300.00428 * 11 10 9 33 33 H 1.08997 * 109.46459 * 60.00239 * 11 10 9 34 34 H 0.96996 * 119.99848 * 179.97438 * 15 14 12 35 35 H 1.09007 * 109.46842 * 58.55179 * 22 20 7 36 36 H 1.09000 * 109.46954 * 178.54747 * 22 20 7 37 37 H 1.08995 * 109.47079 * 298.54822 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0187 0.0000 4 6 2.0834 -0.8029 -1.2001 5 6 3.3092 -1.4969 -0.6485 6 8 4.1851 -1.9984 -1.3209 7 7 3.2862 -1.4773 0.6954 8 6 4.3248 -2.0600 1.5485 9 6 5.3957 -1.0068 1.8398 10 8 4.8247 0.0529 2.6097 11 6 5.7462 1.0946 2.9383 12 6 5.0408 2.1527 3.7468 13 1 3.9936 2.0408 3.9862 14 6 5.7323 3.2638 4.1810 15 7 7.0075 3.3998 3.8899 16 14 4.8577 4.5757 5.1826 17 1 4.3266 3.9730 6.4316 18 1 5.8153 5.6581 5.5241 19 1 3.7360 5.1388 4.3889 20 6 2.0837 -0.8026 1.1982 21 1 1.3504 -1.5371 1.5313 22 6 2.4473 0.1420 2.3456 23 1 -0.3633 -1.0268 0.0418 24 1 -0.3633 0.5497 0.8684 25 1 -0.3634 0.4772 -0.9101 26 1 2.3587 -0.1318 -2.0137 27 1 1.3507 -1.5351 -1.5395 28 1 3.8799 -2.3946 2.4856 29 1 4.7796 -2.9093 1.0387 30 1 6.2119 -1.4637 2.3996 31 1 5.7783 -0.6080 0.9002 32 1 6.5693 0.6811 3.5210 33 1 6.1362 1.5370 2.0217 34 1 7.4939 4.1816 4.1950 35 1 3.1734 0.8759 1.9957 36 1 1.5501 0.6551 2.6919 37 1 2.8773 -0.4320 3.1663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:24 Heat of formation + Delta-G solvation = -109.917838 kcal Electronic energy + Delta-G solvation = -18227.870043 eV Core-core repulsion = 15390.163728 eV Total energy + Delta-G solvation = -2837.706315 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61928 -38.70925 -37.86204 -35.25659 -34.53365 -31.41024 -31.09753 -29.18003 -27.80607 -24.54911 -24.50695 -23.62290 -21.62418 -20.24253 -18.67340 -17.83779 -17.41827 -17.24811 -16.66217 -16.19382 -15.90356 -15.46509 -15.03898 -14.79158 -14.52282 -13.96029 -13.76498 -13.46334 -13.23164 -13.17078 -12.88394 -12.81613 -12.68745 -12.43084 -12.40328 -12.30588 -11.85702 -11.65346 -11.41959 -11.06403 -10.87792 -10.73575 -10.15534 -9.69174 -8.29569 -6.41284 1.40916 1.45260 1.53288 1.54794 2.10125 2.35000 3.05114 3.14721 3.45473 3.55143 3.86177 4.08966 4.15255 4.21505 4.39967 4.53246 4.54905 4.61617 4.63070 4.73009 4.80874 4.88317 4.91209 5.04909 5.16001 5.18195 5.26536 5.32105 5.49084 5.57994 5.66950 5.88007 5.99216 6.23033 6.52678 6.81819 7.16101 7.30162 8.83050 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.006680 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.314902 B = 4190.322705 C = 4814.845971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.141 4.141 5 C 0.500 3.500 6 O -0.591 6.591 7 N -0.607 5.607 8 C 0.136 3.864 9 C 0.034 3.966 10 O -0.369 6.369 11 C 0.205 3.795 12 C -0.532 4.532 13 H 0.074 0.926 14 C 0.001 3.999 15 N -0.937 5.937 16 Si 0.980 3.020 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.134 3.866 21 H 0.102 0.898 22 C -0.143 4.143 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.016 0.984 32 H -0.021 1.021 33 H -0.030 1.030 34 H 0.268 0.732 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 -8.015 -5.189 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.180 4.180 5 C 0.290 3.710 6 O -0.473 6.473 7 N -0.339 5.339 8 C 0.014 3.986 9 C -0.044 4.044 10 O -0.288 6.288 11 C 0.130 3.870 12 C -0.570 4.570 13 H 0.092 0.908 14 C -0.197 4.197 15 N -0.577 5.577 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.187 1.187 20 C 0.032 3.968 21 H 0.120 0.880 22 C -0.200 4.200 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.034 0.966 32 H -0.003 1.003 33 H -0.012 1.012 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.424 -8.194 -5.379 17.439 hybrid contribution 1.068 0.767 0.370 1.366 sum -13.356 -7.427 -5.009 16.082 Atomic orbital electron populations 1.21721 0.90639 1.03304 1.03260 1.22266 0.98658 0.98698 0.91951 0.90482 1.22474 0.95268 1.00823 0.99462 1.21700 0.87971 0.78643 0.82664 1.90654 1.42709 1.50064 1.63867 1.48581 1.22917 1.56141 1.06238 1.21404 0.87791 0.93711 0.95727 1.22884 0.96889 0.90412 0.94219 1.88214 1.36076 1.32195 1.72335 1.19777 0.88932 0.85642 0.92652 1.21343 0.97751 1.04314 1.33548 0.90763 1.26002 0.95595 1.00668 0.97394 1.70095 1.09958 1.30372 1.47228 0.85270 0.78124 0.77371 0.78901 1.18754 1.20778 1.18732 1.22054 0.85148 0.94513 0.95127 0.88027 1.22136 1.00615 0.99689 0.97609 0.90882 0.91541 0.90771 0.87942 0.85238 0.87627 0.88489 0.92612 0.96590 1.00280 1.01189 0.92342 0.92723 0.91273 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.13 71.98 0.66 -1.09 16 2 C -0.10 -1.99 3.25 -9.74 -0.03 -2.02 16 3 H 0.08 1.88 7.91 -2.38 -0.02 1.86 16 4 C -0.14 -3.05 6.42 30.59 0.20 -2.85 16 5 C 0.50 15.92 8.02 87.89 0.71 16.63 16 6 O -0.59 -23.66 17.59 -3.03 -0.05 -23.72 16 7 N -0.61 -18.14 2.79 -794.17 -2.22 -20.36 16 8 C 0.14 4.10 5.86 86.38 0.51 4.61 16 9 C 0.03 1.32 6.28 71.98 0.45 1.77 16 10 O -0.37 -16.67 4.86 -148.98 -0.72 -17.40 16 11 C 0.21 11.33 5.69 71.24 0.41 11.74 16 12 C -0.53 -30.21 9.30 25.60 0.24 -29.98 16 13 H 0.07 4.01 7.81 -2.91 -0.02 3.99 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.94 -56.65 13.29 21.45 0.28 -56.36 16 16 Si 0.98 43.32 29.54 68.60 2.03 45.35 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 20 C 0.13 3.27 3.48 45.44 0.16 3.43 16 21 H 0.10 1.94 7.85 -2.39 -0.02 1.92 16 22 C -0.14 -4.44 7.36 71.98 0.53 -3.91 16 23 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 24 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.13 2.05 7.90 -2.38 -0.02 2.03 16 28 H 0.11 2.73 7.91 -2.39 -0.02 2.71 16 29 H 0.10 2.75 7.93 -2.39 -0.02 2.73 16 30 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 32 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 33 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.05 2.19 6.15 -2.38 -0.01 2.18 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.89 6.39 -2.39 -0.02 1.87 16 Total: -1.00 -70.77 301.01 4.63 -66.14 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.03 Total: 7.49 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 4.28 Total: -1.14 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.93 Total: -76.72 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.78 Total: -41.11 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.77 4.63 -66.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.778 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds