Wall clock time and date at job start Mon Mar 30 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.57360 * 2 1 4 4 C 1.53123 * 109.52445 * 120.15867 * 2 1 3 5 5 C 1.53039 * 109.31189 * 177.58234 * 4 2 1 6 6 N 1.46856 * 109.51787 * 300.79882 * 5 4 2 7 7 C 1.46846 * 111.19871 * 61.74404 * 6 5 4 8 8 C 1.53030 * 109.52435 * 298.25760 * 7 6 5 9 9 C 1.53006 * 109.50186 * 299.23663 * 8 7 6 10 10 C 1.52997 * 109.47098 * 300.00152 * 9 8 7 11 11 C 1.50695 * 109.47141 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00067 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99971 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00004 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46924 * 90.00341 * 15 13 11 17 17 H 1.48501 * 109.46916 * 210.00359 * 15 13 11 18 18 H 1.48505 * 109.47290 * 330.00195 * 15 13 11 19 19 C 1.50704 * 109.50780 * 179.12050 * 8 7 6 20 20 O 1.20826 * 120.00128 * 239.99980 * 19 8 7 21 21 O 1.34228 * 119.99710 * 59.99513 * 19 8 7 22 22 H 1.09005 * 109.47326 * 299.83816 * 1 2 3 23 23 H 1.09000 * 109.47499 * 59.83790 * 1 2 3 24 24 H 1.09005 * 109.47163 * 179.84343 * 1 2 3 25 25 H 1.09002 * 109.50371 * 57.61784 * 4 2 1 26 26 H 1.09003 * 109.50070 * 297.53944 * 4 2 1 27 27 H 1.09000 * 109.46148 * 60.81334 * 5 4 2 28 28 H 1.09001 * 109.46317 * 180.79820 * 5 4 2 29 29 H 1.00903 * 110.99558 * 185.83726 * 6 5 4 30 30 H 1.09004 * 109.46012 * 58.27074 * 7 6 5 31 31 H 1.08997 * 109.46257 * 178.24394 * 7 6 5 32 32 H 1.08998 * 109.46804 * 60.00487 * 9 8 7 33 33 H 1.09005 * 109.47242 * 180.02562 * 9 8 7 34 34 H 1.09004 * 109.46726 * 299.99889 * 10 9 8 35 35 H 1.08997 * 109.47247 * 59.99610 * 10 9 8 36 36 H 0.97000 * 119.99528 * 179.97438 * 14 13 11 37 37 H 0.96696 * 116.99871 * 180.02562 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7250 1.2478 5 6 3.5709 -0.7751 1.2127 6 7 4.0110 -1.4792 0.0014 7 6 3.5724 -0.7758 -1.2107 8 6 2.0433 -0.7256 -1.2478 9 6 1.4861 -2.1503 -1.2754 10 6 2.0025 -2.8760 -2.5194 11 6 1.4542 -4.2794 -2.5462 12 1 0.8022 -4.6196 -1.7553 13 6 1.7841 -5.1287 -3.5810 14 7 2.5777 -4.7143 -4.5444 15 14 1.1049 -6.8686 -3.6139 16 1 -0.1875 -6.8817 -4.3450 17 1 2.0708 -7.7641 -4.2998 18 1 0.8917 -7.3432 -2.2229 19 6 1.5939 0.0152 -2.4809 20 8 0.9287 1.0182 -2.3742 21 8 1.9327 -0.4393 -3.6976 22 1 -0.3634 0.5113 0.8915 23 1 -0.3634 0.5163 -0.8885 24 1 -0.3634 -1.0277 -0.0028 25 1 1.6447 -1.7400 1.2675 26 1 1.7156 -0.1894 2.1394 27 1 3.9674 0.2402 1.2070 28 1 3.9373 -1.3033 2.0930 29 1 5.0117 -1.6088 0.0021 30 1 3.9690 0.2395 -1.2050 31 1 3.9398 -1.3042 -2.0903 32 1 1.8102 -2.6845 -0.3823 33 1 0.3970 -2.1140 -1.3023 34 1 1.6784 -2.3416 -3.4124 35 1 3.0916 -2.9122 -2.4929 36 1 2.8100 -5.3120 -5.2721 37 1 1.6216 0.0697 -4.4586 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693482015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:10 Heat of formation + Delta-G solvation = -103.698232 kcal Electronic energy + Delta-G solvation = -18810.446179 eV Core-core repulsion = 15973.009566 eV Total energy + Delta-G solvation = -2837.436613 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67191 -38.23018 -35.71623 -33.93757 -33.06735 -31.82088 -29.11515 -27.29076 -24.91226 -23.78926 -22.22929 -21.26255 -20.81812 -18.06052 -17.49758 -16.63609 -16.12542 -15.38031 -14.98410 -14.59560 -14.29340 -13.99349 -13.77421 -13.36094 -12.76822 -12.49801 -12.35898 -12.09781 -11.66930 -11.63723 -11.22219 -11.10798 -10.83437 -10.76319 -10.60211 -10.50091 -10.18195 -10.16963 -9.62213 -9.37896 -9.06843 -8.85503 -8.20443 -8.12073 -5.87802 -3.87538 2.68401 3.37713 3.44047 3.47724 3.55247 4.47923 4.55156 4.85404 5.00317 5.10129 5.36426 5.44156 5.47969 5.62987 5.67720 5.80230 5.85564 5.90807 6.05445 6.10042 6.21654 6.26360 6.33475 6.53665 6.61037 6.73544 6.91315 7.05880 7.23441 7.29996 7.60519 7.87189 8.08240 8.19887 8.45204 8.58033 9.20472 9.73950 11.23051 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.007961 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.279342 B = 3516.293096 C = 3844.591777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 H 0.065 0.935 4 C -0.114 4.114 5 C 0.057 3.943 6 N -0.675 5.675 7 C 0.074 3.926 8 C -0.043 4.043 9 C -0.093 4.093 10 C 0.014 3.986 11 C -0.513 4.513 12 H 0.050 0.950 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.885 3.115 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.494 3.506 20 O -0.533 6.533 21 O -0.484 6.484 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.345 0.655 30 H 0.021 0.979 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.022 0.978 36 H 0.257 0.743 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 9.657 8.238 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.088 4.088 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.073 4.073 6 N -0.306 5.306 7 C -0.056 4.056 8 C -0.045 4.045 9 C -0.131 4.131 10 C -0.022 4.022 11 C -0.551 4.551 12 H 0.069 0.931 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.714 3.286 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.200 1.200 19 C 0.337 3.663 20 O -0.424 6.424 21 O -0.293 6.293 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.039 0.961 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.066 9.196 8.450 12.534 hybrid contribution 0.039 0.125 -0.644 0.657 sum 1.105 9.321 7.805 12.208 Atomic orbital electron populations 1.22055 0.94665 1.02358 1.02393 1.21029 0.96563 0.98225 0.93028 0.91652 1.21723 0.94832 1.01933 0.96670 1.21951 0.96139 0.95912 0.93262 1.60064 1.18486 1.51057 1.01006 1.21901 0.92975 0.95996 0.94693 1.20743 0.96671 0.98551 0.88502 1.21745 0.98541 0.89405 1.03384 1.19403 0.96860 0.94178 0.91796 1.21257 1.28787 0.97793 1.07276 0.93133 1.24963 0.95420 0.98122 0.95860 1.69975 1.36047 1.35752 1.11572 0.86705 0.78671 0.85240 0.78006 1.20941 1.21390 1.19997 1.23541 0.75790 0.81662 0.85267 1.90586 1.37979 1.26218 1.87609 1.84972 1.72459 1.55740 1.16165 0.93295 0.90878 0.92112 0.90102 0.91706 0.95831 0.90851 0.83701 0.96107 0.88169 0.90268 0.93411 0.94236 0.95932 0.93337 0.74824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.51 37.16 0.32 -2.08 16 2 C -0.07 -1.06 1.70 -90.45 -0.15 -1.22 16 3 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 4 C -0.11 -1.51 5.02 -26.65 -0.13 -1.65 16 5 C 0.06 0.71 6.55 -3.83 -0.03 0.68 16 6 N -0.67 -9.91 6.13 -113.81 -0.70 -10.60 16 7 C 0.07 1.20 4.87 -3.84 -0.02 1.18 16 8 C -0.04 -0.75 0.29 -155.54 -0.05 -0.80 16 9 C -0.09 -1.92 3.34 -26.73 -0.09 -2.01 16 10 C 0.01 0.36 4.11 -27.89 -0.11 0.24 16 11 C -0.51 -14.50 9.11 -34.44 -0.31 -14.81 16 12 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 19 C 0.49 9.03 6.58 36.01 0.24 9.27 16 20 O -0.53 -10.18 14.58 -18.75 -0.27 -10.46 16 21 O -0.48 -8.64 10.28 -39.25 -0.40 -9.04 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.24 5.75 -51.93 -0.30 0.94 16 24 H 0.06 0.95 6.39 -51.93 -0.33 0.62 16 25 H 0.08 1.18 6.58 -51.93 -0.34 0.84 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.34 4.35 8.90 -39.29 -0.35 4.00 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 1.84 6.38 -51.93 -0.33 1.50 16 32 H 0.08 1.64 6.01 -51.93 -0.31 1.33 16 33 H 0.05 1.00 6.40 -51.93 -0.33 0.67 16 34 H 0.04 1.05 5.34 -51.93 -0.28 0.77 16 35 H 0.02 0.60 6.41 -51.93 -0.33 0.27 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 37 H 0.39 5.15 9.10 45.56 0.41 5.56 16 LS Contribution 282.75 15.07 4.26 4.26 Total: -1.00 -31.96 282.75 -6.40 -38.37 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.57 Total: 6.23 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -0.44 Total: -9.66 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.04 Total: -36.54 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.68 Total: -19.50 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.96 -6.40 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693482015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.332 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds