Wall clock time and date at job start Mon Mar 30 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.57360 * 2 1 4 4 C 1.53123 * 109.52445 * 120.15867 * 2 1 3 5 5 C 1.53039 * 109.31189 * 177.58234 * 4 2 1 6 6 N 1.46856 * 109.51787 * 300.79882 * 5 4 2 7 7 C 1.46846 * 111.19871 * 61.74404 * 6 5 4 8 8 C 1.53030 * 109.52435 * 298.25760 * 7 6 5 9 9 C 1.53006 * 109.50186 * 299.23663 * 8 7 6 10 10 C 1.52997 * 109.47098 * 300.00152 * 9 8 7 11 11 C 1.50695 * 109.47141 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00067 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99971 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00004 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46924 * 90.00341 * 15 13 11 17 17 H 1.48501 * 109.46916 * 210.00359 * 15 13 11 18 18 H 1.48505 * 109.47290 * 330.00195 * 15 13 11 19 19 C 1.50704 * 109.50780 * 179.12050 * 8 7 6 20 20 O 1.20826 * 120.00128 * 239.99980 * 19 8 7 21 21 O 1.34228 * 119.99710 * 59.99513 * 19 8 7 22 22 H 1.09005 * 109.47326 * 299.83816 * 1 2 3 23 23 H 1.09000 * 109.47499 * 59.83790 * 1 2 3 24 24 H 1.09005 * 109.47163 * 179.84343 * 1 2 3 25 25 H 1.09002 * 109.50371 * 57.61784 * 4 2 1 26 26 H 1.09003 * 109.50070 * 297.53944 * 4 2 1 27 27 H 1.09000 * 109.46148 * 60.81334 * 5 4 2 28 28 H 1.09001 * 109.46317 * 180.79820 * 5 4 2 29 29 H 1.00903 * 110.99558 * 185.83726 * 6 5 4 30 30 H 1.09004 * 109.46012 * 58.27074 * 7 6 5 31 31 H 1.08997 * 109.46257 * 178.24394 * 7 6 5 32 32 H 1.08998 * 109.46804 * 60.00487 * 9 8 7 33 33 H 1.09005 * 109.47242 * 180.02562 * 9 8 7 34 34 H 1.09004 * 109.46726 * 299.99889 * 10 9 8 35 35 H 1.08997 * 109.47247 * 59.99610 * 10 9 8 36 36 H 0.97000 * 119.99528 * 179.97438 * 14 13 11 37 37 H 0.96696 * 116.99871 * 180.02562 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7250 1.2478 5 6 3.5709 -0.7751 1.2127 6 7 4.0110 -1.4792 0.0014 7 6 3.5724 -0.7758 -1.2107 8 6 2.0433 -0.7256 -1.2478 9 6 1.4861 -2.1503 -1.2754 10 6 2.0025 -2.8760 -2.5194 11 6 1.4542 -4.2794 -2.5462 12 1 0.8022 -4.6196 -1.7553 13 6 1.7841 -5.1287 -3.5810 14 7 2.5777 -4.7143 -4.5444 15 14 1.1049 -6.8686 -3.6139 16 1 -0.1875 -6.8817 -4.3450 17 1 2.0708 -7.7641 -4.2998 18 1 0.8917 -7.3432 -2.2229 19 6 1.5939 0.0152 -2.4809 20 8 0.9287 1.0182 -2.3742 21 8 1.9327 -0.4393 -3.6976 22 1 -0.3634 0.5113 0.8915 23 1 -0.3634 0.5163 -0.8885 24 1 -0.3634 -1.0277 -0.0028 25 1 1.6447 -1.7400 1.2675 26 1 1.7156 -0.1894 2.1394 27 1 3.9674 0.2402 1.2070 28 1 3.9373 -1.3033 2.0930 29 1 5.0117 -1.6088 0.0021 30 1 3.9690 0.2395 -1.2050 31 1 3.9398 -1.3042 -2.0903 32 1 1.8102 -2.6845 -0.3823 33 1 0.3970 -2.1140 -1.3023 34 1 1.6784 -2.3416 -3.4124 35 1 3.0916 -2.9122 -2.4929 36 1 2.8100 -5.3120 -5.2721 37 1 1.6216 0.0697 -4.4586 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693482015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:10 Heat of formation + Delta-G solvation = -126.398879 kcal Electronic energy + Delta-G solvation = -18811.430553 eV Core-core repulsion = 15973.009566 eV Total energy + Delta-G solvation = -2838.420987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06820 -39.54393 -37.17922 -35.61896 -34.56337 -33.44062 -30.76570 -28.57686 -26.71492 -25.21553 -23.68426 -22.63110 -22.31858 -19.41957 -19.03197 -18.22772 -17.87007 -16.79977 -16.49240 -16.31824 -15.74409 -15.23091 -15.06111 -14.75307 -14.25628 -14.03457 -13.90836 -13.51991 -13.33481 -12.93466 -12.84097 -12.73567 -12.44515 -12.38026 -12.17813 -11.86671 -11.62247 -11.61615 -11.23913 -10.91594 -10.90982 -10.79900 -10.33461 -9.26835 -8.07417 -6.14563 1.22448 1.42644 1.43040 1.53828 2.23125 2.47650 3.25262 3.38401 3.59426 3.75335 3.93547 4.16326 4.22887 4.46237 4.53708 4.58681 4.62474 4.76008 4.82753 4.93339 4.93763 5.00078 5.08824 5.18315 5.23104 5.35720 5.38394 5.59944 5.66821 5.72215 6.01807 6.12031 6.14979 6.41928 6.57970 7.02824 7.10713 7.50987 9.03177 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.007961 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.279342 B = 3516.293096 C = 3844.591777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 H 0.071 0.929 4 C -0.112 4.112 5 C 0.057 3.943 6 N -0.691 5.691 7 C 0.081 3.919 8 C -0.043 4.043 9 C -0.075 4.075 10 C 0.022 3.978 11 C -0.535 4.535 12 H 0.049 0.951 13 C 0.004 3.996 14 N -0.926 5.926 15 Si 0.952 3.048 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.492 3.508 20 O -0.542 6.542 21 O -0.498 6.498 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.355 0.645 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.023 0.977 35 H 0.001 0.999 36 H 0.259 0.741 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 9.819 9.860 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.085 4.085 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.072 4.072 6 N -0.323 5.323 7 C -0.049 4.049 8 C -0.045 4.045 9 C -0.113 4.113 10 C -0.014 4.014 11 C -0.573 4.573 12 H 0.068 0.932 13 C -0.194 4.194 14 N -0.567 5.567 15 Si 0.777 3.223 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.191 1.191 19 C 0.336 3.664 20 O -0.433 6.433 21 O -0.310 6.310 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.175 0.825 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.019 0.981 36 H 0.068 0.932 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 0.926 9.367 10.074 13.787 hybrid contribution 0.085 0.105 -1.186 1.194 sum 1.011 9.472 8.888 13.028 Atomic orbital electron populations 1.22010 0.94730 1.01781 1.02654 1.21057 0.96501 0.98365 0.92606 0.91078 1.21742 0.95405 1.01112 0.96658 1.22043 0.95539 0.96844 0.92747 1.60037 1.19508 1.51586 1.01212 1.21707 0.92006 0.96588 0.94627 1.20765 0.97539 0.96701 0.89464 1.21432 0.97855 0.91094 1.00891 1.19235 0.95365 0.93413 0.93404 1.21707 1.28840 0.99463 1.07322 0.93239 1.25793 0.95726 1.02354 0.95521 1.70100 1.37158 1.37246 1.12162 0.85656 0.78081 0.80168 0.78364 1.20279 1.20901 1.19105 1.23732 0.75518 0.81625 0.85559 1.90577 1.38287 1.26677 1.87798 1.84920 1.72586 1.56490 1.17016 0.90705 0.92929 0.93043 0.91627 0.88802 0.94332 0.88795 0.82500 0.94502 0.91042 0.90384 0.94168 0.95869 0.98060 0.93231 0.72738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 8.51 71.98 0.61 -3.85 16 2 C -0.07 -1.91 1.70 -10.69 -0.02 -1.92 16 3 H 0.07 1.99 8.05 -2.39 -0.02 1.97 16 4 C -0.11 -2.65 5.02 30.65 0.15 -2.50 16 5 C 0.06 1.25 6.55 86.32 0.57 1.82 16 6 N -0.69 -19.32 6.13 -513.99 -3.15 -22.47 16 7 C 0.08 2.58 4.87 86.32 0.42 3.00 16 8 C -0.04 -1.49 0.29 -52.85 -0.02 -1.50 16 9 C -0.08 -3.12 3.34 30.60 0.10 -3.02 16 10 C 0.02 1.16 4.11 29.85 0.12 1.28 16 11 C -0.53 -30.65 9.11 25.60 0.23 -30.42 16 12 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 13 C 0.00 0.21 5.46 84.65 0.46 0.67 16 14 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 15 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 C 0.49 17.99 6.58 71.24 0.47 18.46 16 20 O -0.54 -20.46 14.58 21.96 0.32 -20.14 16 21 O -0.50 -18.17 10.28 -51.40 -0.53 -18.70 16 22 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.05 1.73 5.75 -2.39 -0.01 1.72 16 24 H 0.05 1.56 6.39 -2.38 -0.02 1.54 16 25 H 0.07 1.78 6.58 -2.39 -0.02 1.76 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.36 8.49 8.90 -89.69 -0.80 7.69 16 30 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.07 2.69 6.38 -2.39 -0.02 2.68 16 32 H 0.08 3.24 6.01 -2.39 -0.01 3.22 16 33 H 0.04 1.70 6.40 -2.38 -0.02 1.68 16 34 H 0.02 1.27 5.34 -2.38 -0.01 1.26 16 35 H 0.00 0.06 6.41 -2.39 -0.02 0.05 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.41 10.97 9.10 -74.06 -0.67 10.30 16 Total: -1.00 -68.07 282.75 1.68 -66.38 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.38 Total: 21.76 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 3.11 Total: -17.98 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.87 Total: -78.27 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.21 Total: -38.83 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.07 1.68 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693482015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.015 kcal (2) G-P(sol) polarization free energy of solvation -68.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds