Wall clock time and date at job start Mon Mar 30 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.71854 * 2 1 4 4 C 1.53210 * 109.71479 * 120.60737 * 2 1 3 5 5 C 1.50165 * 109.79002 * 210.36702 * 4 2 1 6 6 O 1.21284 * 118.68066 * 129.33948 * 5 4 2 7 7 N 1.33307 * 122.64537 * 309.36353 * 5 4 2 8 8 C 1.46500 * 117.44505 * 186.80374 * 7 5 4 9 9 C 1.53002 * 109.46865 * 270.01767 * 8 7 5 10 10 C 1.50697 * 109.47117 * 180.02562 * 9 8 7 11 11 H 1.08008 * 119.99926 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00263 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99630 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00102 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47480 * 59.99911 * 14 12 10 16 16 H 1.48501 * 109.47093 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46968 * 299.99773 * 14 12 10 18 18 C 1.45860 * 125.10535 * 6.82412 * 7 5 4 19 19 C 1.53030 * 110.92203 * 329.26089 * 18 7 5 20 20 H 1.08995 * 109.56313 * 329.41749 * 19 18 7 21 21 C 1.53006 * 109.56255 * 209.19784 * 19 18 7 22 22 O 1.42520 * 109.71877 * 239.34301 * 2 1 3 23 23 H 1.09003 * 109.47224 * 299.39574 * 1 2 3 24 24 H 1.09005 * 109.47297 * 59.38857 * 1 2 3 25 25 H 1.08998 * 109.47180 * 179.39089 * 1 2 3 26 26 H 1.09005 * 109.41441 * 90.27211 * 4 2 1 27 27 H 1.08996 * 109.36595 * 330.43096 * 4 2 1 28 28 H 1.09000 * 109.47360 * 30.01639 * 8 7 5 29 29 H 1.08995 * 109.46840 * 150.01961 * 8 7 5 30 30 H 1.09000 * 109.47027 * 300.00075 * 9 8 7 31 31 H 1.09000 * 109.47265 * 59.99950 * 9 8 7 32 32 H 0.97000 * 119.99560 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.18484 * 208.89524 * 18 7 5 34 34 H 1.09000 * 109.18931 * 89.63696 * 18 7 5 35 35 H 1.09001 * 109.47002 * 60.00095 * 21 19 18 36 36 H 1.08993 * 109.46955 * 180.02562 * 21 19 18 37 37 H 1.09000 * 109.47050 * 300.00361 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0468 -0.7343 1.2413 5 6 3.3660 -0.1539 1.6630 6 8 3.5143 0.1734 2.8214 7 7 4.3805 0.0167 0.8152 8 6 5.6633 0.4487 1.3756 9 6 5.7253 1.9774 1.3884 10 6 7.0452 2.4218 1.9642 11 1 7.7677 1.6873 2.2882 12 6 7.3304 3.7660 2.0774 13 7 6.4507 4.6603 1.6824 14 14 8.9667 4.3168 2.7905 15 1 10.0743 3.7840 1.9572 16 1 9.0263 5.8005 2.8042 17 1 9.0999 3.8037 4.1777 18 6 4.3130 -0.1927 -0.6267 19 6 3.2993 -1.2855 -0.9733 20 1 3.2542 -2.0121 -0.1620 21 6 3.7234 -1.9864 -2.2656 22 8 2.0108 -0.6841 -1.1541 23 1 -0.3634 0.5044 0.8954 24 1 -0.3634 0.5233 -0.8845 25 1 -0.3633 -1.0276 -0.0109 26 1 2.1736 -1.7920 1.0101 27 1 1.3268 -0.6245 2.0522 28 1 5.7601 0.0726 2.3940 29 1 6.4768 0.0571 0.7648 30 1 5.6286 2.3535 0.3699 31 1 4.9118 2.3689 1.9991 32 1 6.6513 5.6060 1.7624 33 1 5.2966 -0.4876 -0.9922 34 1 4.0161 0.7378 -1.1104 35 1 4.7076 -2.4348 -2.1296 36 1 3.0002 -2.7640 -2.5112 37 1 3.7643 -1.2594 -3.0766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695479355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:38 Heat of formation + Delta-G solvation = -85.075851 kcal Electronic energy + Delta-G solvation = -18177.737700 eV Core-core repulsion = 15341.108614 eV Total energy + Delta-G solvation = -2836.629086 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66164 -38.06021 -35.60041 -33.47104 -32.94463 -31.31208 -29.64468 -28.11881 -26.34511 -24.48732 -22.65352 -21.30876 -20.60952 -19.04791 -17.74207 -16.48908 -16.24186 -15.64608 -15.08323 -14.58193 -14.36637 -14.02504 -13.71508 -13.27827 -13.25139 -12.69683 -12.48789 -12.39888 -12.16632 -12.02499 -11.82957 -11.50982 -11.26810 -11.20037 -10.93923 -10.79884 -10.66385 -9.87865 -9.81895 -9.55779 -9.39899 -9.06528 -8.33332 -8.06706 -5.98744 -4.01836 2.99935 3.34698 3.38482 3.40103 3.46721 3.52461 4.45019 4.48121 4.65975 4.85746 4.87442 4.96888 5.12739 5.33583 5.37283 5.40889 5.44813 5.52775 5.57448 5.65638 5.79373 5.94495 5.97553 6.06099 6.08451 6.14963 6.52196 6.79628 6.90354 7.10395 7.63881 7.75511 8.01220 8.02165 8.38238 8.60955 9.04586 9.61635 11.12815 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.005824 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.347292 B = 4806.367531 C = 5077.412393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.072 0.928 4 C -0.177 4.177 5 C 0.506 3.494 6 O -0.539 6.539 7 N -0.602 5.602 8 C 0.110 3.890 9 C 0.015 3.985 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.085 3.915 19 C 0.065 3.935 20 H 0.071 0.929 21 C -0.140 4.140 22 O -0.377 6.377 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.014 0.986 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -13.052 -7.681 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.090 0.910 4 C -0.217 4.217 5 C 0.293 3.707 6 O -0.417 6.417 7 N -0.334 5.334 8 C -0.011 4.011 9 C -0.023 4.023 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.039 4.039 19 C 0.008 3.992 20 H 0.089 0.911 21 C -0.197 4.197 22 O -0.297 6.297 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.130 -12.704 -7.268 17.251 hybrid contribution 1.052 0.519 0.544 1.293 sum -8.078 -12.185 -6.724 16.092 Atomic orbital electron populations 1.21862 0.92777 1.02789 1.02838 1.22107 0.95251 0.95920 0.83502 0.91040 1.22660 0.96262 1.01921 1.00827 1.19865 0.85297 0.79474 0.86032 1.90751 1.82160 1.50152 1.18617 1.47609 1.12834 1.66294 1.06691 1.21984 0.81150 0.99493 0.98497 1.19341 0.97616 0.88101 0.97259 1.21061 1.01406 0.91806 1.41683 0.92630 1.25001 0.97017 0.96790 0.95491 1.69968 1.34822 1.01096 1.47392 0.86615 0.83957 0.77413 0.79752 1.20225 1.21272 1.20171 1.22167 1.00947 0.99407 0.81375 1.22700 0.82975 0.94307 0.99254 0.91116 1.21714 1.01474 1.00518 0.96020 1.87984 1.33798 1.71583 1.36292 0.90847 0.91525 0.91848 0.88122 0.87581 0.90850 0.91893 0.96768 0.95858 0.92930 0.89224 0.90746 0.90721 0.91576 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.42 37.16 0.35 -1.12 16 2 C 0.09 1.17 3.09 -26.62 -0.08 1.09 16 3 H 0.07 1.09 7.77 -51.93 -0.40 0.68 16 4 C -0.18 -2.41 4.93 -28.03 -0.14 -2.55 16 5 C 0.51 9.52 6.78 -11.90 -0.08 9.44 16 6 O -0.54 -12.65 16.26 5.55 0.09 -12.56 16 7 N -0.60 -11.03 2.77 -174.83 -0.48 -11.52 16 8 C 0.11 2.38 5.06 -4.04 -0.02 2.36 16 9 C 0.01 0.40 5.28 -27.88 -0.15 0.25 16 10 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 11 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 14 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.08 1.22 5.42 -4.37 -0.02 1.20 16 19 C 0.07 0.77 2.87 -26.71 -0.08 0.69 16 20 H 0.07 0.81 5.55 -51.93 -0.29 0.52 16 21 C -0.14 -1.25 9.41 37.16 0.35 -0.90 16 22 O -0.38 -4.85 10.09 -35.23 -0.36 -5.21 16 23 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.10 1.18 6.03 -51.93 -0.31 0.86 16 27 H 0.11 1.36 7.78 -51.93 -0.40 0.95 16 28 H 0.07 1.70 7.27 -51.93 -0.38 1.32 16 29 H 0.06 1.23 7.70 -51.93 -0.40 0.83 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 1.15 7.35 -51.93 -0.38 0.77 16 34 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -33.94 298.74 -6.72 -40.66 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.91 Total: -2.72 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.28 Total: -3.35 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.25 Total: -38.36 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.27 Total: -17.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.94 -6.72 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695479355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.413 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds