Wall clock time and date at job start Mon Mar 30 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.71854 * 2 1 4 4 C 1.53210 * 109.71479 * 120.60737 * 2 1 3 5 5 C 1.50165 * 109.79002 * 210.36702 * 4 2 1 6 6 O 1.21284 * 118.68066 * 129.33948 * 5 4 2 7 7 N 1.33307 * 122.64537 * 309.36353 * 5 4 2 8 8 C 1.46500 * 117.44505 * 186.80374 * 7 5 4 9 9 C 1.53002 * 109.46865 * 270.01767 * 8 7 5 10 10 C 1.50697 * 109.47117 * 180.02562 * 9 8 7 11 11 H 1.08008 * 119.99926 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00263 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99630 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00102 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47480 * 59.99911 * 14 12 10 16 16 H 1.48501 * 109.47093 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46968 * 299.99773 * 14 12 10 18 18 C 1.45860 * 125.10535 * 6.82412 * 7 5 4 19 19 C 1.53030 * 110.92203 * 329.26089 * 18 7 5 20 20 H 1.08995 * 109.56313 * 329.41749 * 19 18 7 21 21 C 1.53006 * 109.56255 * 209.19784 * 19 18 7 22 22 O 1.42520 * 109.71877 * 239.34301 * 2 1 3 23 23 H 1.09003 * 109.47224 * 299.39574 * 1 2 3 24 24 H 1.09005 * 109.47297 * 59.38857 * 1 2 3 25 25 H 1.08998 * 109.47180 * 179.39089 * 1 2 3 26 26 H 1.09005 * 109.41441 * 90.27211 * 4 2 1 27 27 H 1.08996 * 109.36595 * 330.43096 * 4 2 1 28 28 H 1.09000 * 109.47360 * 30.01639 * 8 7 5 29 29 H 1.08995 * 109.46840 * 150.01961 * 8 7 5 30 30 H 1.09000 * 109.47027 * 300.00075 * 9 8 7 31 31 H 1.09000 * 109.47265 * 59.99950 * 9 8 7 32 32 H 0.97000 * 119.99560 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.18484 * 208.89524 * 18 7 5 34 34 H 1.09000 * 109.18931 * 89.63696 * 18 7 5 35 35 H 1.09001 * 109.47002 * 60.00095 * 21 19 18 36 36 H 1.08993 * 109.46955 * 180.02562 * 21 19 18 37 37 H 1.09000 * 109.47050 * 300.00361 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0468 -0.7343 1.2413 5 6 3.3660 -0.1539 1.6630 6 8 3.5143 0.1734 2.8214 7 7 4.3805 0.0167 0.8152 8 6 5.6633 0.4487 1.3756 9 6 5.7253 1.9774 1.3884 10 6 7.0452 2.4218 1.9642 11 1 7.7677 1.6873 2.2882 12 6 7.3304 3.7660 2.0774 13 7 6.4507 4.6603 1.6824 14 14 8.9667 4.3168 2.7905 15 1 10.0743 3.7840 1.9572 16 1 9.0263 5.8005 2.8042 17 1 9.0999 3.8037 4.1777 18 6 4.3130 -0.1927 -0.6267 19 6 3.2993 -1.2855 -0.9733 20 1 3.2542 -2.0121 -0.1620 21 6 3.7234 -1.9864 -2.2656 22 8 2.0108 -0.6841 -1.1541 23 1 -0.3634 0.5044 0.8954 24 1 -0.3634 0.5233 -0.8845 25 1 -0.3633 -1.0276 -0.0109 26 1 2.1736 -1.7920 1.0101 27 1 1.3268 -0.6245 2.0522 28 1 5.7601 0.0726 2.3940 29 1 6.4768 0.0571 0.7648 30 1 5.6286 2.3535 0.3699 31 1 4.9118 2.3689 1.9991 32 1 6.6513 5.6060 1.7624 33 1 5.2966 -0.4876 -0.9922 34 1 4.0161 0.7378 -1.1104 35 1 4.7076 -2.4348 -2.1296 36 1 3.0002 -2.7640 -2.5112 37 1 3.7643 -1.2594 -3.0766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695479355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:38 Heat of formation + Delta-G solvation = -108.468211 kcal Electronic energy + Delta-G solvation = -18178.752069 eV Core-core repulsion = 15341.108614 eV Total energy + Delta-G solvation = -2837.643455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.97897 -39.36631 -37.14589 -35.27298 -34.32348 -32.76843 -31.13840 -29.36123 -27.62764 -26.37495 -23.69216 -23.19651 -21.69387 -20.52652 -18.95044 -18.49473 -17.63219 -17.15149 -16.66660 -16.19559 -15.70701 -15.45495 -14.78620 -14.74819 -14.54686 -14.27030 -14.09717 -13.50557 -13.45099 -13.12134 -12.95268 -12.84238 -12.78561 -12.58108 -12.46519 -12.14427 -12.04825 -11.88340 -11.70765 -11.43520 -10.83595 -10.60941 -10.57294 -9.69378 -8.24849 -6.38066 1.37419 1.42377 1.49329 1.51702 2.01248 2.39582 2.57322 3.08470 3.28723 3.60650 3.79374 3.83946 3.96950 4.10090 4.26510 4.35808 4.44455 4.51780 4.60532 4.67619 4.69763 4.73418 4.89047 4.95433 5.06848 5.09471 5.16818 5.25689 5.35622 5.42013 5.54336 5.77687 6.09721 6.13688 6.49410 6.77280 7.10450 7.31674 8.87509 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.005824 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.347292 B = 4806.367531 C = 5077.412393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.091 3.909 3 H 0.038 0.962 4 C -0.163 4.163 5 C 0.497 3.503 6 O -0.596 6.596 7 N -0.602 5.602 8 C 0.124 3.876 9 C 0.026 3.974 10 C -0.545 4.545 11 H 0.067 0.933 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.258 1.258 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.079 3.921 19 C 0.069 3.931 20 H 0.081 0.919 21 C -0.134 4.134 22 O -0.378 6.378 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.116 0.884 28 H 0.056 0.944 29 H 0.092 0.908 30 H -0.006 1.006 31 H -0.027 1.027 32 H 0.264 0.736 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 -14.890 -8.629 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 H 0.056 0.944 4 C -0.203 4.203 5 C 0.286 3.714 6 O -0.478 6.478 7 N -0.332 5.332 8 C 0.001 3.999 9 C -0.012 4.012 10 C -0.583 4.583 11 H 0.085 0.915 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.183 1.183 16 H -0.208 1.208 17 H -0.195 1.195 18 C -0.043 4.043 19 C 0.011 3.989 20 H 0.098 0.902 21 C -0.192 4.192 22 O -0.298 6.298 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.013 0.987 31 H -0.009 1.009 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.710 -14.572 -8.266 18.882 hybrid contribution 0.894 1.125 0.805 1.647 sum -7.817 -13.447 -7.460 17.250 Atomic orbital electron populations 1.21845 0.90164 1.04230 1.03425 1.22079 0.97179 0.94148 0.83269 0.94357 1.22633 0.93069 1.03124 1.01434 1.20866 0.86770 0.78496 0.85258 1.90720 1.83326 1.52630 1.21100 1.47690 1.11618 1.65491 1.08442 1.21579 0.83988 0.95661 0.98656 1.19143 0.95452 0.91826 0.94742 1.21532 1.02243 0.92616 1.41958 0.91500 1.26067 1.01402 0.96853 0.95623 1.70124 1.37289 1.01559 1.48517 0.85387 0.78856 0.76990 0.79118 1.18251 1.20780 1.19481 1.22458 1.03310 0.99972 0.78598 1.22824 0.81604 0.93184 1.01247 0.90180 1.21743 1.02798 1.00541 0.94099 1.88007 1.34170 1.71445 1.36207 0.90218 0.91091 0.89911 0.85148 0.86543 0.92575 0.89017 0.98718 1.00893 0.92705 0.87175 0.92528 0.88967 0.90095 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.42 71.98 0.68 -1.87 16 2 C 0.09 2.29 3.09 30.66 0.09 2.38 16 3 H 0.04 1.21 7.77 -2.39 -0.02 1.19 16 4 C -0.16 -4.27 4.93 29.75 0.15 -4.12 16 5 C 0.50 19.05 6.78 87.72 0.59 19.65 16 6 O -0.60 -29.26 16.26 -3.04 -0.05 -29.30 16 7 N -0.60 -22.36 2.77 -826.24 -2.29 -24.65 16 8 C 0.12 5.48 5.06 86.38 0.44 5.92 16 9 C 0.03 1.49 5.28 29.85 0.16 1.65 16 10 C -0.55 -32.29 9.11 25.60 0.23 -32.05 16 11 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 12 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 13 N -0.94 -59.36 13.29 21.45 0.28 -59.08 16 14 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 18 C 0.08 2.22 5.42 86.51 0.47 2.69 16 19 C 0.07 1.46 2.87 30.61 0.09 1.55 16 20 H 0.08 1.58 5.55 -2.39 -0.01 1.57 16 21 C -0.13 -1.95 9.41 71.98 0.68 -1.28 16 22 O -0.38 -9.01 10.09 -148.98 -1.50 -10.52 16 23 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 24 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.13 2.67 6.03 -2.38 -0.01 2.65 16 27 H 0.12 2.84 7.78 -2.39 -0.02 2.82 16 28 H 0.06 2.68 7.27 -2.39 -0.02 2.66 16 29 H 0.09 3.51 7.70 -2.39 -0.02 3.49 16 30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.11 2.62 7.35 -2.39 -0.02 2.60 16 34 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 35 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.03 298.74 3.54 -73.49 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.04 Total: 7.76 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 4.04 Total: -5.12 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.00 Total: -83.73 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.55 Total: -39.82 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -77.03 3.54 -73.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695479355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.979 kcal (2) G-P(sol) polarization free energy of solvation -77.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds