Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47395 * 2 1 4 4 C 1.52999 * 109.46950 * 120.00261 * 2 1 3 5 5 C 1.50703 * 109.47462 * 183.87139 * 4 2 1 6 6 H 1.08000 * 119.99782 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00456 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99696 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00077 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47227 * 59.99782 * 9 7 5 11 11 H 1.48500 * 109.47282 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46948 * 299.99832 * 9 7 5 13 13 N 1.46905 * 109.47303 * 239.99898 * 2 1 3 14 14 C 1.46847 * 110.99586 * 70.94762 * 13 2 1 15 15 C 1.53038 * 109.52019 * 174.15901 * 14 13 2 16 16 C 1.53112 * 109.27981 * 59.18367 * 15 14 13 17 17 C 1.50703 * 109.52530 * 182.44034 * 16 15 14 18 18 O 1.20821 * 119.99824 * 359.97438 * 17 16 15 19 19 O 1.34229 * 119.99834 * 180.02562 * 17 16 15 20 20 C 1.53122 * 109.16022 * 302.34180 * 16 15 14 21 21 C 1.46847 * 111.00204 * 306.74020 * 13 2 1 22 22 H 1.08991 * 109.47797 * 299.99619 * 1 2 3 23 23 H 1.09004 * 109.46902 * 59.99970 * 1 2 3 24 24 H 1.09009 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47469 * 303.87081 * 4 2 1 26 26 H 1.09008 * 109.47348 * 63.87337 * 4 2 1 27 27 H 0.96998 * 120.00001 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46176 * 54.14592 * 14 13 2 29 29 H 1.08998 * 109.46769 * 294.17871 * 14 13 2 30 30 H 1.09006 * 109.50331 * 179.12269 * 15 14 13 31 31 H 1.09006 * 109.50759 * 299.23557 * 15 14 13 32 32 H 1.09002 * 109.52496 * 62.24458 * 16 15 14 33 33 H 0.96700 * 116.99551 * 180.02562 * 19 17 16 34 34 H 1.09002 * 109.50226 * 297.71662 * 20 16 15 35 35 H 1.08998 * 109.50604 * 177.59189 * 20 16 15 36 36 H 1.08999 * 109.45883 * 305.84915 * 21 13 2 37 37 H 1.09000 * 109.46278 * 65.82161 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5439 -0.6388 1.2982 6 1 4.0821 -0.1231 0.5168 7 6 4.2327 -1.2208 2.3412 8 7 3.5772 -1.8484 3.2931 9 14 6.0968 -1.1179 2.4023 10 1 6.5127 0.3068 2.4484 11 1 6.5917 -1.8171 3.6153 12 1 6.6679 -1.7614 1.1918 13 7 2.0197 -0.6925 -1.1994 14 6 1.7731 0.1071 -2.4062 15 6 2.4229 -0.5743 -3.6127 16 6 1.8338 -1.9777 -3.7787 17 6 2.5125 -2.6761 -4.9287 18 8 3.3785 -2.1102 -5.5529 19 8 2.1542 -3.9265 -5.2603 20 6 2.0612 -2.7738 -2.4906 21 6 1.4220 -2.0287 -1.3166 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6210 -0.2492 2.1379 26 1 1.7343 -1.7671 1.2152 27 1 4.0617 -2.2581 4.0267 28 1 2.2008 1.1013 -2.2767 29 1 0.6993 0.1926 -2.5722 30 1 2.2265 0.0114 -4.5108 31 1 3.4988 -0.6476 -3.4535 32 1 0.7645 -1.9029 -3.9766 33 1 2.6181 -4.3332 -6.0049 34 1 3.1314 -2.8818 -2.3137 35 1 1.6064 -3.7597 -2.5869 36 1 1.5946 -2.5857 -0.3957 37 1 0.3497 -1.9332 -1.4877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695706573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -103.964998 kcal Electronic energy + Delta-G solvation = -18119.481600 eV Core-core repulsion = 15282.033419 eV Total energy + Delta-G solvation = -2837.448181 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51324 -38.68741 -36.19586 -34.83305 -32.48744 -30.67786 -29.85716 -27.30085 -25.39223 -23.23618 -22.80593 -21.67069 -19.77089 -18.71863 -18.03751 -16.72582 -16.15407 -15.68434 -15.34866 -14.57010 -14.30374 -13.89562 -13.67088 -13.37076 -13.19486 -12.62970 -12.14141 -11.88559 -11.74444 -11.62467 -11.51345 -11.39238 -10.96607 -10.91852 -10.58440 -10.49154 -10.43927 -10.33006 -10.06150 -9.85618 -9.16079 -8.96503 -8.24055 -7.47727 -5.87448 -3.85004 2.20413 3.03695 3.42492 3.46017 3.50244 4.48783 4.58405 4.71479 4.90987 5.09151 5.40067 5.46822 5.49564 5.60502 5.68974 5.77611 5.82065 5.93488 5.97330 5.99729 6.03823 6.22894 6.36439 6.38121 6.42785 6.55220 6.59773 6.71506 6.98708 7.53872 7.68143 7.87307 7.91343 8.02205 8.13962 8.59684 9.20928 9.76745 11.24513 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023077 B = 0.006856 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.032380 B = 4082.852871 C = 4681.115276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.030 3.970 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.511 5.511 14 C 0.054 3.946 15 C -0.099 4.099 16 C -0.078 4.078 17 C 0.484 3.516 18 O -0.517 6.517 19 O -0.517 6.517 20 C -0.106 4.106 21 C 0.058 3.942 22 H 0.056 0.944 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.258 0.742 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.405 0.595 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 -1.226 -13.853 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.235 5.235 14 C -0.074 4.074 15 C -0.137 4.137 16 C -0.098 4.098 17 C 0.327 3.673 18 O -0.405 6.405 19 O -0.329 6.329 20 C -0.144 4.144 21 C -0.070 4.070 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.895 -1.035 -13.475 14.745 hybrid contribution 0.480 -0.209 -0.536 0.750 sum -5.415 -1.244 -14.011 15.073 Atomic orbital electron populations 1.22526 0.99739 1.01352 1.00676 1.21920 0.90047 0.98364 0.91784 0.91193 1.19197 0.96378 0.95300 0.89814 1.21138 0.91639 1.33397 1.06658 0.92160 1.24995 0.97952 0.95944 0.95966 1.69950 1.35240 1.37332 1.12044 0.86707 0.86474 0.77999 0.77054 1.20521 1.21693 1.20387 1.62052 1.58404 1.01774 1.01284 1.22076 0.97402 0.97510 0.90430 1.21516 1.02089 0.92305 0.97788 1.21188 1.00729 0.96171 0.91672 1.23734 0.80438 0.79099 0.84040 1.90700 1.30938 1.66213 1.52687 1.84571 1.64493 1.30623 1.53171 1.21620 1.03319 0.97807 0.91652 1.22076 0.94917 0.91263 0.98773 0.92531 0.94190 0.92794 0.96350 0.96301 0.93290 0.90590 0.95566 0.91414 0.89953 0.88040 0.73653 0.90265 0.90781 0.88783 0.95439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 8.43 37.15 0.31 -2.71 16 2 C 0.09 1.70 2.26 -67.71 -0.15 1.55 16 3 H 0.07 1.41 7.97 -51.93 -0.41 0.99 16 4 C 0.03 0.75 4.37 -27.88 -0.12 0.63 16 5 C -0.49 -13.56 8.81 -34.44 -0.30 -13.86 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.51 -9.28 4.28 -226.69 -0.97 -10.25 16 14 C 0.05 0.81 5.15 -3.83 -0.02 0.79 16 15 C -0.10 -1.38 4.68 -26.65 -0.12 -1.51 16 16 C -0.08 -1.01 2.70 -91.65 -0.25 -1.25 16 17 C 0.48 6.32 7.63 36.01 0.27 6.60 16 18 O -0.52 -8.22 16.73 -18.75 -0.31 -8.54 16 19 O -0.52 -5.30 13.36 -39.26 -0.52 -5.83 16 20 C -0.11 -1.52 5.31 -26.65 -0.14 -1.66 16 21 C 0.06 0.95 4.52 -3.83 -0.02 0.93 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.04 0.58 6.85 -51.93 -0.36 0.22 16 24 H 0.05 0.87 6.45 -51.92 -0.34 0.54 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.49 6.30 -51.92 -0.33 0.16 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 29 H 0.03 0.36 6.91 -51.93 -0.36 0.00 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.41 2.40 9.10 45.56 0.41 2.81 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.80 6.18 -51.93 -0.32 1.48 16 37 H 0.03 0.41 6.57 -51.93 -0.34 0.07 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -31.79 295.12 -7.23 -39.03 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.95 Total: -0.47 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.64 Total: -9.15 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.23 Total: -36.59 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.84 Total: -14.36 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.79 -7.23 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695706573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.940 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds