Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47395 * 2 1 4 4 C 1.52999 * 109.46950 * 120.00261 * 2 1 3 5 5 C 1.50703 * 109.47462 * 183.87139 * 4 2 1 6 6 H 1.08000 * 119.99782 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00456 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99696 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00077 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47227 * 59.99782 * 9 7 5 11 11 H 1.48500 * 109.47282 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46948 * 299.99832 * 9 7 5 13 13 N 1.46905 * 109.47303 * 239.99898 * 2 1 3 14 14 C 1.46847 * 110.99586 * 70.94762 * 13 2 1 15 15 C 1.53038 * 109.52019 * 174.15901 * 14 13 2 16 16 C 1.53112 * 109.27981 * 59.18367 * 15 14 13 17 17 C 1.50703 * 109.52530 * 182.44034 * 16 15 14 18 18 O 1.20821 * 119.99824 * 359.97438 * 17 16 15 19 19 O 1.34229 * 119.99834 * 180.02562 * 17 16 15 20 20 C 1.53122 * 109.16022 * 302.34180 * 16 15 14 21 21 C 1.46847 * 111.00204 * 306.74020 * 13 2 1 22 22 H 1.08991 * 109.47797 * 299.99619 * 1 2 3 23 23 H 1.09004 * 109.46902 * 59.99970 * 1 2 3 24 24 H 1.09009 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47469 * 303.87081 * 4 2 1 26 26 H 1.09008 * 109.47348 * 63.87337 * 4 2 1 27 27 H 0.96998 * 120.00001 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46176 * 54.14592 * 14 13 2 29 29 H 1.08998 * 109.46769 * 294.17871 * 14 13 2 30 30 H 1.09006 * 109.50331 * 179.12269 * 15 14 13 31 31 H 1.09006 * 109.50759 * 299.23557 * 15 14 13 32 32 H 1.09002 * 109.52496 * 62.24458 * 16 15 14 33 33 H 0.96700 * 116.99551 * 180.02562 * 19 17 16 34 34 H 1.09002 * 109.50226 * 297.71662 * 20 16 15 35 35 H 1.08998 * 109.50604 * 177.59189 * 20 16 15 36 36 H 1.08999 * 109.45883 * 305.84915 * 21 13 2 37 37 H 1.09000 * 109.46278 * 65.82161 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5439 -0.6388 1.2982 6 1 4.0821 -0.1231 0.5168 7 6 4.2327 -1.2208 2.3412 8 7 3.5772 -1.8484 3.2931 9 14 6.0968 -1.1179 2.4023 10 1 6.5127 0.3068 2.4484 11 1 6.5917 -1.8171 3.6153 12 1 6.6679 -1.7614 1.1918 13 7 2.0197 -0.6925 -1.1994 14 6 1.7731 0.1071 -2.4062 15 6 2.4229 -0.5743 -3.6127 16 6 1.8338 -1.9777 -3.7787 17 6 2.5125 -2.6761 -4.9287 18 8 3.3785 -2.1102 -5.5529 19 8 2.1542 -3.9265 -5.2603 20 6 2.0612 -2.7738 -2.4906 21 6 1.4220 -2.0287 -1.3166 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6210 -0.2492 2.1379 26 1 1.7343 -1.7671 1.2152 27 1 4.0617 -2.2581 4.0267 28 1 2.2008 1.1013 -2.2767 29 1 0.6993 0.1926 -2.5722 30 1 2.2265 0.0114 -4.5108 31 1 3.4988 -0.6476 -3.4535 32 1 0.7645 -1.9029 -3.9766 33 1 2.6181 -4.3332 -6.0049 34 1 3.1314 -2.8818 -2.3137 35 1 1.6064 -3.7597 -2.5869 36 1 1.5946 -2.5857 -0.3957 37 1 0.3497 -1.9332 -1.4877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695706573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -125.896772 kcal Electronic energy + Delta-G solvation = -18120.432633 eV Core-core repulsion = 15282.033419 eV Total energy + Delta-G solvation = -2838.399214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55605 -39.97114 -37.15967 -36.27164 -34.49359 -31.93911 -31.29912 -29.11952 -26.60852 -25.07291 -24.08816 -22.88628 -21.04700 -20.08804 -19.00787 -18.31825 -17.78945 -16.80231 -16.64182 -16.50887 -15.66559 -15.17981 -14.89235 -14.68505 -14.35531 -14.21833 -13.68660 -13.54892 -13.18804 -12.94448 -12.85148 -12.61918 -12.52575 -12.48413 -12.30935 -12.08229 -11.76746 -11.61224 -11.46109 -11.27888 -11.06446 -10.86363 -10.44563 -8.82973 -8.08063 -6.11772 1.20022 1.41912 1.43916 1.51426 2.14605 2.48327 3.13849 3.29481 3.64674 3.79909 4.05386 4.19522 4.38180 4.40122 4.43657 4.51077 4.55691 4.66415 4.73905 4.83310 4.87170 5.00701 5.07659 5.18016 5.21474 5.26361 5.29272 5.41819 5.54841 5.62887 5.75189 5.93361 6.36616 6.52935 6.59305 7.01397 7.02299 7.53670 9.03654 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023077 B = 0.006856 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.032380 B = 4082.852871 C = 4681.115276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.095 3.905 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.497 4.497 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.538 5.538 14 C 0.058 3.942 15 C -0.094 4.094 16 C -0.074 4.074 17 C 0.492 3.508 18 O -0.551 6.551 19 O -0.509 6.509 20 C -0.098 4.098 21 C 0.061 3.939 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.054 0.946 25 H -0.009 1.009 26 H -0.001 1.001 27 H 0.258 0.742 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.426 0.574 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -1.120 -15.736 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 H 0.081 0.919 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.262 5.262 14 C -0.070 4.070 15 C -0.132 4.132 16 C -0.093 4.093 17 C 0.336 3.664 18 O -0.441 6.441 19 O -0.322 6.322 20 C -0.136 4.136 21 C -0.067 4.067 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.018 0.982 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.287 0.713 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.622 -0.943 -15.383 16.774 hybrid contribution 0.688 -0.289 0.029 0.746 sum -5.934 -1.232 -15.354 16.507 Atomic orbital electron populations 1.22383 0.96904 1.01874 1.02049 1.21594 0.92263 0.97078 0.90392 0.91869 1.19063 0.94955 0.94528 0.91631 1.21470 0.93334 1.32599 1.06172 0.92637 1.25789 1.02472 0.95853 0.95816 1.70072 1.36917 1.38443 1.12721 0.85714 0.81171 0.78310 0.77060 1.19625 1.21275 1.20062 1.61904 1.59597 1.02771 1.01973 1.22098 0.98928 0.96910 0.89056 1.21437 1.00304 0.93438 0.98018 1.21139 1.02375 0.95081 0.90703 1.23637 0.79613 0.79587 0.83581 1.90700 1.32319 1.67185 1.53939 1.84514 1.64388 1.29245 1.54085 1.21510 1.01513 0.98873 0.91720 1.21993 0.96398 0.90275 0.98003 0.92675 0.91267 0.92654 0.99054 0.98250 0.93324 0.90773 0.93128 0.89587 0.92775 0.85048 0.71275 0.92999 0.88754 0.92437 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.38 8.43 71.98 0.61 -4.77 16 2 C 0.09 3.70 2.26 44.91 0.10 3.81 16 3 H 0.06 2.52 7.97 -2.39 -0.02 2.50 16 4 C 0.04 1.81 4.37 29.85 0.13 1.94 16 5 C -0.50 -28.18 8.81 25.60 0.23 -27.95 16 6 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 9 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.54 -19.12 4.28 -871.12 -3.73 -22.85 16 14 C 0.06 1.59 5.15 86.33 0.44 2.03 16 15 C -0.09 -2.43 4.68 30.64 0.14 -2.29 16 16 C -0.07 -1.70 2.70 -11.46 -0.03 -1.73 16 17 C 0.49 11.67 7.63 71.24 0.54 12.21 16 18 O -0.55 -16.64 16.73 21.98 0.37 -16.27 16 19 O -0.51 -8.88 13.36 -51.41 -0.69 -9.57 16 20 C -0.10 -2.67 5.31 30.65 0.16 -2.51 16 21 C 0.06 1.96 4.52 86.33 0.39 2.35 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 1.75 6.85 -2.39 -0.02 1.74 16 24 H 0.05 1.69 6.45 -2.38 -0.02 1.68 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.00 -0.04 6.30 -2.38 -0.02 -0.06 16 27 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.07 2.06 8.00 -2.39 -0.02 2.04 16 29 H 0.05 1.17 6.91 -2.39 -0.02 1.15 16 30 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.05 1.71 8.04 -2.38 -0.02 1.69 16 32 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.43 3.78 9.10 -74.06 -0.67 3.10 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.26 6.18 -2.39 -0.01 2.24 16 37 H 0.05 1.39 6.57 -2.39 -0.02 1.37 16 Total: -1.00 -69.61 295.12 1.83 -67.78 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.39 Total: 6.87 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 3.18 Total: -16.65 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.45 Total: -80.14 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.32 Total: -25.84 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -69.61 1.83 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695706573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.115 kcal (2) G-P(sol) polarization free energy of solvation -69.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds