Wall clock time and date at job start Mon Mar 30 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47104 * 239.99621 * 2 1 3 5 5 C 1.50698 * 109.46998 * 176.09163 * 4 2 1 6 6 H 1.07999 * 120.00249 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99980 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00125 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47308 * 90.00262 * 9 7 5 11 11 H 1.48503 * 109.47376 * 210.00283 * 9 7 5 12 12 H 1.48509 * 109.47220 * 330.00161 * 9 7 5 13 13 N 1.46903 * 109.46970 * 119.99405 * 2 1 3 14 14 C 1.46905 * 111.00064 * 53.17220 * 13 2 1 15 15 C 1.50692 * 109.47180 * 155.11934 * 14 13 2 16 16 O 1.20826 * 120.00199 * 352.71162 * 15 14 13 17 17 O 1.34228 * 120.00013 * 172.71724 * 15 14 13 18 18 C 1.46897 * 111.00425 * 289.21213 * 13 2 1 19 19 C 1.52994 * 109.47213 * 210.22501 * 18 13 2 20 20 C 1.53008 * 117.49605 * 180.56654 * 19 18 13 21 21 C 1.53001 * 117.49807 * 249.18639 * 19 18 13 22 22 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46921 * 299.99995 * 1 2 3 24 24 H 1.08994 * 109.47255 * 60.00237 * 1 2 3 25 25 H 1.08999 * 109.46866 * 296.09307 * 4 2 1 26 26 H 1.08995 * 109.46847 * 56.09140 * 4 2 1 27 27 H 0.96996 * 119.99800 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46827 * 275.11703 * 14 13 2 29 29 H 1.09001 * 109.46788 * 35.11256 * 14 13 2 30 30 H 0.96701 * 117.00418 * 179.97438 * 17 15 14 31 31 H 1.09000 * 109.46664 * 90.22248 * 18 13 2 32 32 H 1.08995 * 109.46871 * 330.22815 * 18 13 2 33 33 H 1.08992 * 115.56383 * 34.87690 * 19 18 13 34 34 H 1.09000 * 117.50120 * 0.02562 * 20 19 18 35 35 H 1.08996 * 117.49779 * 214.97585 * 20 19 18 36 36 H 1.09006 * 117.49987 * 145.02060 * 21 19 18 37 37 H 1.09005 * 117.51744 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5439 -0.6380 -1.2985 6 1 4.0821 -0.1225 -0.5169 7 6 4.2328 -1.2208 -2.3411 8 7 3.5774 -1.8489 -3.2926 9 14 6.0969 -1.1181 -2.4019 10 1 6.6803 -2.2846 -1.6918 11 1 6.5471 -1.1243 -3.8171 12 1 6.5453 0.1362 -1.7453 13 7 2.0196 -0.6924 1.1995 14 6 1.4201 -2.0283 1.3180 15 6 2.3282 -2.9164 2.1286 16 8 3.4250 -2.5255 2.4513 17 8 1.9188 -4.1419 2.4922 18 6 1.7697 0.1058 2.4071 19 6 2.8558 -0.1851 3.4447 20 6 2.7642 0.5440 4.7867 21 6 2.4430 -0.9496 4.7041 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.7349 -1.7672 -1.2147 26 1 1.6206 -0.2496 -2.1377 27 1 4.0620 -2.2586 -4.0262 28 1 0.4522 -1.9495 1.8131 29 1 1.2860 -2.4557 0.3242 30 1 2.5363 -4.6752 3.0113 31 1 0.7946 -0.1542 2.8191 32 1 1.7854 1.1654 2.1519 33 1 3.8507 -0.3769 3.0430 34 1 1.9299 1.2306 4.9305 35 1 3.6989 0.8319 5.2678 36 1 3.1664 -1.6444 5.1309 37 1 1.3976 -1.2451 4.7939 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695706715.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:46 Heat of formation + Delta-G solvation = -60.006086 kcal Electronic energy + Delta-G solvation = -18425.263112 eV Core-core repulsion = 15589.721133 eV Total energy + Delta-G solvation = -2835.541979 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.87032 -38.07309 -36.35847 -35.44420 -32.82186 -30.79714 -28.43276 -27.28433 -24.90150 -22.90009 -22.16151 -21.45429 -19.96975 -18.73285 -17.60051 -16.58084 -16.08756 -15.66076 -15.39693 -14.46568 -14.35352 -14.14050 -13.72216 -13.03996 -12.73851 -12.36258 -12.29271 -11.83036 -11.73624 -11.38414 -11.35497 -11.09630 -10.92044 -10.84133 -10.67928 -10.43689 -10.10538 -10.04358 -9.76497 -9.49016 -9.18556 -8.99474 -8.24703 -7.66351 -5.88112 -3.85230 2.86185 3.39048 3.43086 3.48440 3.53599 4.07965 4.47739 4.59664 5.07255 5.17428 5.37743 5.47691 5.48993 5.59763 5.65843 5.69257 5.78624 5.86406 5.89820 5.94276 6.00258 6.03115 6.19077 6.30973 6.40495 6.53121 6.76970 6.88718 7.01300 7.40680 7.55940 7.76591 7.91694 8.12979 8.51104 8.56728 9.21153 9.77067 11.23827 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.008103 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.621560 B = 3454.864712 C = 3609.718575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.089 3.911 3 H 0.079 0.921 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.495 5.495 14 C 0.069 3.931 15 C 0.473 3.527 16 O -0.481 6.481 17 O -0.531 6.531 18 C 0.083 3.917 19 C -0.120 4.120 20 C -0.191 4.191 21 C -0.185 4.185 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.060 0.940 25 H 0.017 0.983 26 H 0.023 0.977 27 H 0.257 0.743 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.401 0.599 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 0.629 12.708 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.018 4.018 3 H 0.097 0.903 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.219 5.219 14 C -0.060 4.060 15 C 0.313 3.687 16 O -0.365 6.365 17 O -0.343 6.343 18 C -0.045 4.045 19 C -0.138 4.138 20 C -0.229 4.229 21 C -0.222 4.222 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.258 0.742 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.863 0.853 12.343 13.691 hybrid contribution 0.619 -0.406 0.370 0.828 sum -5.244 0.447 12.713 13.760 Atomic orbital electron populations 1.22616 0.99295 1.01479 1.01140 1.22077 0.90192 0.98540 0.91039 0.90336 1.19253 0.96718 0.95035 0.89883 1.21168 0.91446 1.33404 1.06676 0.91911 1.24989 0.98066 0.95878 0.95940 1.69956 1.35180 1.37396 1.12095 0.86616 0.86452 0.78465 0.76571 1.20966 1.21686 1.19958 1.61417 1.58537 0.99994 1.01945 1.21545 0.93048 0.90534 1.00878 1.23536 0.87514 0.79915 0.77742 1.90662 1.21718 1.73171 1.50915 1.84527 1.51462 1.29180 1.69178 1.21801 0.94556 0.97915 0.90206 1.22432 1.02178 1.01567 0.87643 1.22949 1.02566 0.94749 1.02592 1.22902 1.00932 0.94261 1.04094 0.92866 0.94006 0.92090 0.96511 0.95871 0.93346 0.91954 0.85946 0.74188 0.95116 0.90721 0.85818 0.89542 0.89293 0.89505 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 8.61 37.16 0.32 -2.58 16 2 C 0.09 1.70 2.19 -67.71 -0.15 1.55 16 3 H 0.08 1.54 7.76 -51.93 -0.40 1.13 16 4 C 0.03 0.69 4.39 -27.88 -0.12 0.56 16 5 C -0.49 -13.64 8.81 -34.44 -0.30 -13.95 16 6 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 10 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.50 -9.17 3.63 -228.09 -0.83 -10.00 16 14 C 0.07 1.18 4.10 -4.98 -0.02 1.16 16 15 C 0.47 8.21 7.51 36.00 0.27 8.48 16 16 O -0.48 -9.60 13.61 -18.75 -0.26 -9.85 16 17 O -0.53 -7.44 13.42 -39.25 -0.53 -7.96 16 18 C 0.08 1.30 4.52 -3.83 -0.02 1.28 16 19 C -0.12 -1.88 3.88 -90.62 -0.35 -2.23 16 20 C -0.19 -2.46 10.25 -26.73 -0.27 -2.73 16 21 C -0.18 -2.53 9.04 -26.73 -0.24 -2.78 16 22 H 0.05 0.80 6.73 -51.93 -0.35 0.45 16 23 H 0.04 0.57 7.49 -51.93 -0.39 0.18 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.02 0.43 6.16 -51.93 -0.32 0.11 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.06 0.90 7.14 -51.93 -0.37 0.53 16 29 H 0.12 2.29 5.61 -51.93 -0.29 2.00 16 30 H 0.40 3.90 9.10 45.56 0.41 4.32 16 31 H 0.03 0.43 7.14 -51.93 -0.37 0.06 16 32 H 0.07 1.12 7.54 -51.93 -0.39 0.73 16 33 H 0.12 2.36 7.20 -51.93 -0.37 1.98 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -31.70 300.25 -7.27 -38.98 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.92 Total: 3.05 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.99 Total: -9.86 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.09 Total: -36.47 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.78 Total: -17.82 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.70 -7.27 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695706715.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.031 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds