Wall clock time and date at job start Mon Mar 30 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47104 * 239.99621 * 2 1 3 5 5 C 1.50698 * 109.46998 * 176.09163 * 4 2 1 6 6 H 1.07999 * 120.00249 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99980 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99797 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00125 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47308 * 90.00262 * 9 7 5 11 11 H 1.48503 * 109.47376 * 210.00283 * 9 7 5 12 12 H 1.48509 * 109.47220 * 330.00161 * 9 7 5 13 13 N 1.46903 * 109.46970 * 119.99405 * 2 1 3 14 14 C 1.46905 * 111.00064 * 53.17220 * 13 2 1 15 15 C 1.50692 * 109.47180 * 155.11934 * 14 13 2 16 16 O 1.20826 * 120.00199 * 352.71162 * 15 14 13 17 17 O 1.34228 * 120.00013 * 172.71724 * 15 14 13 18 18 C 1.46897 * 111.00425 * 289.21213 * 13 2 1 19 19 C 1.52994 * 109.47213 * 210.22501 * 18 13 2 20 20 C 1.53008 * 117.49605 * 180.56654 * 19 18 13 21 21 C 1.53001 * 117.49807 * 249.18639 * 19 18 13 22 22 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46921 * 299.99995 * 1 2 3 24 24 H 1.08994 * 109.47255 * 60.00237 * 1 2 3 25 25 H 1.08999 * 109.46866 * 296.09307 * 4 2 1 26 26 H 1.08995 * 109.46847 * 56.09140 * 4 2 1 27 27 H 0.96996 * 119.99800 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46827 * 275.11703 * 14 13 2 29 29 H 1.09001 * 109.46788 * 35.11256 * 14 13 2 30 30 H 0.96701 * 117.00418 * 179.97438 * 17 15 14 31 31 H 1.09000 * 109.46664 * 90.22248 * 18 13 2 32 32 H 1.08995 * 109.46871 * 330.22815 * 18 13 2 33 33 H 1.08992 * 115.56383 * 34.87690 * 19 18 13 34 34 H 1.09000 * 117.50120 * 0.02562 * 20 19 18 35 35 H 1.08996 * 117.49779 * 214.97585 * 20 19 18 36 36 H 1.09006 * 117.49987 * 145.02060 * 21 19 18 37 37 H 1.09005 * 117.51744 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5439 -0.6380 -1.2985 6 1 4.0821 -0.1225 -0.5169 7 6 4.2328 -1.2208 -2.3411 8 7 3.5774 -1.8489 -3.2926 9 14 6.0969 -1.1181 -2.4019 10 1 6.6803 -2.2846 -1.6918 11 1 6.5471 -1.1243 -3.8171 12 1 6.5453 0.1362 -1.7453 13 7 2.0196 -0.6924 1.1995 14 6 1.4201 -2.0283 1.3180 15 6 2.3282 -2.9164 2.1286 16 8 3.4250 -2.5255 2.4513 17 8 1.9188 -4.1419 2.4922 18 6 1.7697 0.1058 2.4071 19 6 2.8558 -0.1851 3.4447 20 6 2.7642 0.5440 4.7867 21 6 2.4430 -0.9496 4.7041 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.7349 -1.7672 -1.2147 26 1 1.6206 -0.2496 -2.1377 27 1 4.0620 -2.2586 -4.0262 28 1 0.4522 -1.9495 1.8131 29 1 1.2860 -2.4557 0.3242 30 1 2.5363 -4.6752 3.0113 31 1 0.7946 -0.1542 2.8191 32 1 1.7854 1.1654 2.1519 33 1 3.8507 -0.3769 3.0430 34 1 1.9299 1.2306 4.9305 35 1 3.6989 0.8319 5.2678 36 1 3.1664 -1.6444 5.1309 37 1 1.3976 -1.2451 4.7939 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695706715.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:46 Heat of formation + Delta-G solvation = -81.132836 kcal Electronic energy + Delta-G solvation = -18426.179237 eV Core-core repulsion = 15589.721133 eV Total energy + Delta-G solvation = -2836.458104 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20142 -39.38927 -37.60096 -36.74325 -34.88777 -32.40862 -29.78358 -29.02358 -26.26941 -24.80959 -23.20031 -22.81022 -21.22381 -20.19494 -18.90941 -18.38378 -17.79671 -16.96048 -16.70437 -16.40433 -15.73887 -15.32887 -15.12816 -14.44138 -14.23143 -13.90372 -13.68480 -13.49633 -13.27776 -12.90557 -12.65808 -12.54348 -12.40324 -12.35049 -12.24282 -12.17383 -11.80501 -11.36109 -11.21573 -11.10064 -10.80404 -10.60456 -10.47158 -9.00159 -8.10476 -6.12622 1.38062 1.40218 1.50132 1.51269 2.15885 2.46650 2.95512 3.20327 3.28316 3.96193 4.07691 4.15595 4.22010 4.31454 4.36949 4.49340 4.54979 4.61972 4.68242 4.78475 4.81018 4.91945 5.04736 5.08031 5.20206 5.26766 5.29922 5.50327 5.53944 5.72244 5.84176 5.90547 6.26253 6.36367 6.52331 7.00973 7.27907 7.52566 9.01100 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.008103 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.621560 B = 3454.864712 C = 3609.718575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 H 0.072 0.928 4 C 0.033 3.967 5 C -0.493 4.493 6 H 0.052 0.948 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.947 3.053 10 H -0.286 1.286 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.523 5.523 14 C 0.069 3.931 15 C 0.475 3.525 16 O -0.513 6.513 17 O -0.521 6.521 18 C 0.089 3.911 19 C -0.142 4.142 20 C -0.170 4.170 21 C -0.177 4.177 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.000 1.000 26 H 0.001 0.999 27 H 0.258 0.742 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.420 0.580 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 1.073 14.456 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.009 4.009 3 H 0.090 0.910 4 C -0.004 4.004 5 C -0.532 4.532 6 H 0.070 0.930 7 C -0.198 4.198 8 N -0.579 5.579 9 Si 0.774 3.226 10 H -0.212 1.212 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.247 5.247 14 C -0.060 4.060 15 C 0.316 3.684 16 O -0.400 6.400 17 O -0.335 6.335 18 C -0.038 4.038 19 C -0.161 4.161 20 C -0.207 4.207 21 C -0.214 4.214 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.281 0.719 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.847 1.285 14.110 15.735 hybrid contribution 0.932 -0.601 -0.129 1.117 sum -5.914 0.684 13.980 15.195 Atomic orbital electron populations 1.22474 0.96041 1.02293 1.02618 1.21740 0.92700 0.97167 0.89258 0.91002 1.19126 0.94815 0.94544 0.91950 1.21478 0.93470 1.32378 1.05881 0.92990 1.25725 1.02131 0.95999 0.95961 1.70056 1.36628 1.38506 1.12729 0.85723 0.81768 0.78334 0.76815 1.21241 1.20822 1.19349 1.61246 1.59811 1.00921 1.02719 1.21545 0.94480 0.89876 1.00138 1.23600 0.86943 0.80564 0.77250 1.90669 1.22957 1.74046 1.52341 1.84471 1.51810 1.28070 1.69145 1.21794 0.95527 0.97610 0.88860 1.22195 1.00395 1.04658 0.88832 1.23036 1.03535 0.94588 0.99566 1.22903 1.01445 0.94804 1.02267 0.92374 0.91091 0.92015 0.98135 0.98074 0.93328 0.88612 0.87994 0.71914 0.92687 0.90362 0.89960 0.87374 0.88844 0.90297 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 8.61 71.98 0.62 -4.45 16 2 C 0.10 3.74 2.19 44.91 0.10 3.84 16 3 H 0.07 2.79 7.76 -2.38 -0.02 2.77 16 4 C 0.03 1.64 4.39 29.85 0.13 1.77 16 5 C -0.49 -28.16 8.81 25.60 0.23 -27.94 16 6 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 8 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 9 Si 0.95 47.10 29.54 68.60 2.03 49.12 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.52 -18.94 3.63 -875.54 -3.18 -22.11 16 14 C 0.07 2.26 4.10 85.55 0.35 2.61 16 15 C 0.48 16.04 7.51 71.23 0.53 16.58 16 16 O -0.51 -20.52 13.61 21.96 0.30 -20.22 16 17 O -0.52 -13.65 13.42 -51.40 -0.69 -14.34 16 18 C 0.09 2.60 4.52 86.30 0.39 2.99 16 19 C -0.14 -4.28 3.88 -10.79 -0.04 -4.33 16 20 C -0.17 -3.92 10.25 30.60 0.31 -3.61 16 21 C -0.18 -4.46 9.04 30.60 0.28 -4.18 16 22 H 0.06 1.62 6.73 -2.39 -0.02 1.60 16 23 H 0.07 1.66 7.49 -2.38 -0.02 1.64 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.00 0.03 6.16 -2.39 -0.01 0.01 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.10 2.47 7.14 -2.39 -0.02 2.46 16 29 H 0.10 3.81 5.61 -2.39 -0.01 3.79 16 30 H 0.42 7.40 9.10 -74.06 -0.67 6.72 16 31 H 0.06 1.33 7.14 -2.39 -0.02 1.31 16 32 H 0.08 2.18 7.54 -2.39 -0.02 2.16 16 33 H 0.08 3.21 7.20 -2.39 -0.02 3.19 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.10 2.13 8.05 -2.38 -0.02 2.11 16 Total: -1.00 -69.26 300.25 2.49 -66.77 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.39 Total: 14.26 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 3.36 Total: -16.39 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -2.89 Total: -79.21 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.39 Total: -34.56 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -69.26 2.49 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695706715.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.361 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds