Wall clock time and date at job start Mon Mar 30 2020 04:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46789 * 2 1 4 4 C 1.52998 * 109.46683 * 240.00471 * 2 1 3 5 5 C 1.50702 * 109.47230 * 175.00093 * 4 2 1 6 6 H 1.08005 * 119.99222 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00456 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99816 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00232 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47237 * 60.00130 * 9 7 5 11 11 H 1.48498 * 109.47282 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47405 * 299.99799 * 9 7 5 13 13 N 1.46895 * 109.47151 * 120.00278 * 2 1 3 14 14 C 1.48539 * 110.99993 * 49.68120 * 13 2 1 15 15 C 1.54939 * 103.22687 * 200.27670 * 14 13 2 16 16 C 1.54601 * 102.91964 * 37.41042 * 15 14 13 17 17 H 1.09003 * 110.30587 * 96.95723 * 16 15 14 18 18 C 1.52992 * 110.30897 * 219.12410 * 16 15 14 19 19 C 1.47899 * 111.00107 * 292.28004 * 13 2 1 20 20 H 1.08995 * 109.91701 * 26.30078 * 19 13 2 21 21 C 1.50690 * 109.92081 * 265.19627 * 19 13 2 22 22 O 1.20832 * 120.00277 * 341.45703 * 21 19 13 23 23 O 1.34233 * 120.00212 * 161.72806 * 21 19 13 24 24 H 1.08999 * 109.47156 * 52.54614 * 1 2 3 25 25 H 1.08995 * 109.47271 * 172.55025 * 1 2 3 26 26 H 1.09003 * 109.46533 * 292.55185 * 1 2 3 27 27 H 1.09003 * 109.47447 * 294.99851 * 4 2 1 28 28 H 1.08995 * 109.47510 * 55.00113 * 4 2 1 29 29 H 0.97001 * 119.99708 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.66677 * 318.71068 * 14 13 2 31 31 H 1.08993 * 110.66582 * 81.84062 * 14 13 2 32 32 H 1.09000 * 110.72348 * 155.76790 * 15 14 13 33 33 H 1.08997 * 110.72437 * 279.05543 * 15 14 13 34 34 H 1.09003 * 109.47269 * 175.72006 * 18 16 15 35 35 H 1.09004 * 109.47449 * 295.72199 * 18 16 15 36 36 H 1.09000 * 109.47371 * 55.72292 * 18 16 15 37 37 H 0.96698 * 117.00105 * 179.72490 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1934 -2.3580 8 7 3.5763 -1.8385 -3.2992 9 14 6.0919 -1.0611 -2.4371 10 1 6.6845 -1.6862 -1.2274 11 1 6.5870 -1.7621 -3.6489 12 1 6.4844 0.3699 -2.4975 13 7 2.0197 -0.6925 1.1994 14 6 1.3512 -2.0087 1.3643 15 6 1.5655 -2.3296 2.8649 16 6 1.4202 -0.9456 3.5385 17 1 0.4083 -0.8163 3.9226 18 6 2.4414 -0.7949 4.6677 19 6 1.7029 0.0768 2.4221 20 1 0.8236 0.6982 2.2524 21 6 2.8766 0.9415 2.8033 22 8 3.9747 0.6986 2.3615 23 8 2.7034 1.9785 3.6378 24 1 -0.3633 0.6249 -0.8158 25 1 -0.3633 -1.0189 -0.1332 26 1 -0.3632 0.3942 0.9491 27 1 1.7516 -1.7715 -1.2058 28 1 1.6054 -0.2616 -2.1370 29 1 4.0607 -2.2452 -4.0347 30 1 0.2883 -1.9317 1.1353 31 1 1.8271 -2.7630 0.7378 32 1 0.7999 -3.0164 3.2256 33 1 2.5619 -2.7379 3.0335 34 1 2.3786 0.2112 5.0825 35 1 2.2289 -1.5241 5.4495 36 1 3.4442 -0.9643 4.2757 37 1 3.4866 2.5018 3.8563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695707233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:51 Heat of formation + Delta-G solvation = -87.792406 kcal Electronic energy + Delta-G solvation = -18659.985729 eV Core-core repulsion = 15823.238845 eV Total energy + Delta-G solvation = -2836.746885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49138 -38.45468 -35.61503 -34.86785 -32.39178 -30.27150 -29.46429 -27.30286 -25.85332 -23.27945 -22.96582 -21.45832 -19.67664 -18.70243 -17.54041 -16.44765 -16.05144 -15.91256 -15.12255 -14.54381 -14.30526 -14.06043 -13.28859 -13.11014 -12.73328 -12.49186 -12.24091 -11.98122 -11.74091 -11.64069 -11.28781 -11.19620 -10.90034 -10.78516 -10.61300 -10.57254 -10.46631 -10.32299 -9.94295 -9.87273 -9.18270 -8.94015 -8.18683 -7.67663 -5.81653 -3.78258 2.67431 3.23218 3.49035 3.50632 3.58205 4.51950 4.63205 4.65334 4.88977 4.95738 5.37276 5.51024 5.55426 5.58801 5.59570 5.70108 5.75992 5.77154 5.89143 5.96988 6.00869 6.07554 6.20056 6.35425 6.40779 6.53714 6.66373 6.82699 6.93018 7.41436 7.46977 7.82256 7.94250 8.20004 8.36768 8.65059 9.29724 9.83736 11.30417 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.008357 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.215436 B = 3349.753547 C = 3753.509417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.076 3.924 3 H 0.067 0.933 4 C 0.036 3.964 5 C -0.488 4.488 6 H 0.064 0.936 7 C 0.050 3.950 8 N -0.907 5.907 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.467 5.467 14 C 0.037 3.963 15 C -0.121 4.121 16 C -0.085 4.085 17 H 0.083 0.917 18 C -0.159 4.159 19 C 0.071 3.929 20 H 0.080 0.920 21 C 0.481 3.519 22 O -0.477 6.477 23 O -0.531 6.531 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.257 0.743 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 2.883 14.806 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 H 0.085 0.915 4 C -0.002 4.002 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.149 4.149 8 N -0.549 5.549 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.191 5.191 14 C -0.090 4.090 15 C -0.159 4.159 16 C -0.105 4.105 17 H 0.101 0.899 18 C -0.216 4.216 19 C -0.040 4.040 20 H 0.098 0.902 21 C 0.321 3.679 22 O -0.360 6.360 23 O -0.343 6.343 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.440 2.422 14.327 15.894 hybrid contribution 0.720 0.598 0.010 0.936 sum -5.721 3.020 14.337 15.729 Atomic orbital electron populations 1.22568 0.99395 1.01982 1.00627 1.22143 0.90228 0.98540 0.92294 0.91490 1.19117 0.96557 0.95242 0.89246 1.21212 0.91704 1.32777 1.06974 0.91764 1.24977 0.97998 0.95909 0.95986 1.69963 1.35238 1.37206 1.12447 0.86676 0.86493 0.77992 0.76924 1.20303 1.21776 1.20585 1.64538 1.54193 1.01559 0.98822 1.23286 0.97531 0.92485 0.95684 1.22647 1.02547 0.95351 0.95314 1.21879 0.99854 0.94562 0.94162 0.89869 1.22073 0.99415 1.02179 0.97925 1.22049 0.92798 0.94807 0.94336 0.90217 1.23293 0.91107 0.78452 0.75093 1.90765 1.26742 1.68468 1.50063 1.84547 1.44597 1.42642 1.62541 0.92210 0.92136 0.93957 0.96240 0.96237 0.93387 0.93105 0.88800 0.91096 0.90406 0.91802 0.92049 0.91802 0.74047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.20 37.16 0.30 -2.79 16 2 C 0.08 1.57 2.23 -67.71 -0.15 1.42 16 3 H 0.07 1.47 8.11 -51.93 -0.42 1.05 16 4 C 0.04 0.92 4.45 -27.88 -0.12 0.79 16 5 C -0.49 -14.30 8.84 -34.44 -0.30 -14.61 16 6 H 0.06 1.96 7.74 -52.48 -0.41 1.55 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.91 -27.95 13.29 55.43 0.74 -27.22 16 9 Si 0.89 23.28 29.54 -169.99 -5.02 18.26 16 10 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 13 N -0.47 -9.09 4.17 -216.04 -0.90 -9.99 16 14 C 0.04 0.62 5.55 -1.89 -0.01 0.61 16 15 C -0.12 -1.63 6.61 -24.87 -0.16 -1.80 16 16 C -0.09 -1.10 3.59 -89.26 -0.32 -1.42 16 17 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 18 C -0.16 -1.91 7.93 37.15 0.29 -1.62 16 19 C 0.07 1.13 2.73 -67.80 -0.18 0.94 16 20 H 0.08 1.17 5.97 -51.93 -0.31 0.86 16 21 C 0.48 8.13 5.43 36.00 0.20 8.32 16 22 O -0.48 -10.19 17.16 -18.76 -0.32 -10.51 16 23 O -0.53 -6.77 12.29 -39.27 -0.48 -7.25 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.98 6.39 -51.93 -0.33 0.65 16 26 H 0.04 0.60 6.24 -51.93 -0.32 0.28 16 27 H 0.02 0.52 7.07 -51.93 -0.37 0.16 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.05 0.77 5.47 -51.93 -0.28 0.49 16 31 H 0.09 1.79 7.64 -51.93 -0.40 1.39 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.13 7.84 -51.93 -0.41 0.73 16 34 H 0.06 0.73 6.62 -51.93 -0.34 0.38 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.92 7.42 -51.93 -0.39 0.53 16 37 H 0.40 3.51 9.10 45.56 0.41 3.93 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -34.01 293.40 -6.94 -40.95 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.81 Total: 0.07 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.56 Total: -8.73 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.16 Total: -37.20 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.80 Total: -17.77 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.01 -6.94 -40.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695707233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.841 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds