Wall clock time and date at job start Mon Mar 30 2020 04:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46789 * 2 1 4 4 C 1.52998 * 109.46683 * 240.00471 * 2 1 3 5 5 C 1.50702 * 109.47230 * 175.00093 * 4 2 1 6 6 H 1.08005 * 119.99222 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00456 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99816 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00232 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47237 * 60.00130 * 9 7 5 11 11 H 1.48498 * 109.47282 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47405 * 299.99799 * 9 7 5 13 13 N 1.46895 * 109.47151 * 120.00278 * 2 1 3 14 14 C 1.48539 * 110.99993 * 49.68120 * 13 2 1 15 15 C 1.54939 * 103.22687 * 200.27670 * 14 13 2 16 16 C 1.54601 * 102.91964 * 37.41042 * 15 14 13 17 17 H 1.09003 * 110.30587 * 96.95723 * 16 15 14 18 18 C 1.52992 * 110.30897 * 219.12410 * 16 15 14 19 19 C 1.47899 * 111.00107 * 292.28004 * 13 2 1 20 20 H 1.08995 * 109.91701 * 26.30078 * 19 13 2 21 21 C 1.50690 * 109.92081 * 265.19627 * 19 13 2 22 22 O 1.20832 * 120.00277 * 341.45703 * 21 19 13 23 23 O 1.34233 * 120.00212 * 161.72806 * 21 19 13 24 24 H 1.08999 * 109.47156 * 52.54614 * 1 2 3 25 25 H 1.08995 * 109.47271 * 172.55025 * 1 2 3 26 26 H 1.09003 * 109.46533 * 292.55185 * 1 2 3 27 27 H 1.09003 * 109.47447 * 294.99851 * 4 2 1 28 28 H 1.08995 * 109.47510 * 55.00113 * 4 2 1 29 29 H 0.97001 * 119.99708 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.66677 * 318.71068 * 14 13 2 31 31 H 1.08993 * 110.66582 * 81.84062 * 14 13 2 32 32 H 1.09000 * 110.72348 * 155.76790 * 15 14 13 33 33 H 1.08997 * 110.72437 * 279.05543 * 15 14 13 34 34 H 1.09003 * 109.47269 * 175.72006 * 18 16 15 35 35 H 1.09004 * 109.47449 * 295.72199 * 18 16 15 36 36 H 1.09000 * 109.47371 * 55.72292 * 18 16 15 37 37 H 0.96698 * 117.00105 * 179.72490 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1934 -2.3580 8 7 3.5763 -1.8385 -3.2992 9 14 6.0919 -1.0611 -2.4371 10 1 6.6845 -1.6862 -1.2274 11 1 6.5870 -1.7621 -3.6489 12 1 6.4844 0.3699 -2.4975 13 7 2.0197 -0.6925 1.1994 14 6 1.3512 -2.0087 1.3643 15 6 1.5655 -2.3296 2.8649 16 6 1.4202 -0.9456 3.5385 17 1 0.4083 -0.8163 3.9226 18 6 2.4414 -0.7949 4.6677 19 6 1.7029 0.0768 2.4221 20 1 0.8236 0.6982 2.2524 21 6 2.8766 0.9415 2.8033 22 8 3.9747 0.6986 2.3615 23 8 2.7034 1.9785 3.6378 24 1 -0.3633 0.6249 -0.8158 25 1 -0.3633 -1.0189 -0.1332 26 1 -0.3632 0.3942 0.9491 27 1 1.7516 -1.7715 -1.2058 28 1 1.6054 -0.2616 -2.1370 29 1 4.0607 -2.2452 -4.0347 30 1 0.2883 -1.9317 1.1353 31 1 1.8271 -2.7630 0.7378 32 1 0.7999 -3.0164 3.2256 33 1 2.5619 -2.7379 3.0335 34 1 2.3786 0.2112 5.0825 35 1 2.2289 -1.5241 5.4495 36 1 3.4442 -0.9643 4.2757 37 1 3.4866 2.5018 3.8563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695707233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:50 Heat of formation + Delta-G solvation = -112.313964 kcal Electronic energy + Delta-G solvation = -18661.049064 eV Core-core repulsion = 15823.238845 eV Total energy + Delta-G solvation = -2837.810219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.77509 -39.78292 -36.88941 -36.37146 -34.48040 -31.62263 -30.83636 -29.15174 -27.08251 -25.06990 -24.41059 -22.85138 -20.88969 -20.16356 -18.81857 -18.36924 -17.64853 -17.25435 -16.52436 -16.40132 -15.76143 -15.31114 -14.74395 -14.43789 -14.19913 -13.80915 -13.75226 -13.44665 -13.41401 -13.15806 -12.78998 -12.57978 -12.52219 -12.37236 -12.31719 -11.95512 -11.85016 -11.67944 -11.58048 -11.17344 -11.15333 -11.07614 -10.50438 -9.07204 -8.13025 -6.16005 1.35146 1.37979 1.38519 1.47281 2.07391 2.44642 3.14431 3.26279 3.52652 3.78730 3.85521 4.14107 4.30009 4.34956 4.44157 4.49325 4.53138 4.58162 4.73600 4.83087 4.90918 4.95681 5.10087 5.13701 5.19286 5.21918 5.30508 5.39291 5.44939 5.66673 5.72571 5.87114 6.14523 6.24576 6.46231 6.97237 7.18628 7.49196 8.98545 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.008357 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.215436 B = 3349.753547 C = 3753.509417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.085 3.915 3 H 0.048 0.952 4 C 0.042 3.958 5 C -0.499 4.499 6 H 0.046 0.954 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.274 1.274 13 N -0.504 5.504 14 C 0.035 3.965 15 C -0.112 4.112 16 C -0.078 4.078 17 H 0.123 0.877 18 C -0.154 4.154 19 C 0.066 3.934 20 H 0.101 0.899 21 C 0.487 3.513 22 O -0.534 6.534 23 O -0.513 6.513 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.001 0.999 28 H -0.004 1.004 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 3.315 16.975 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 H 0.066 0.934 4 C 0.005 3.995 5 C -0.538 4.538 6 H 0.064 0.936 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.204 1.204 12 H -0.200 1.200 13 N -0.229 5.229 14 C -0.092 4.092 15 C -0.150 4.150 16 C -0.096 4.096 17 H 0.141 0.859 18 C -0.212 4.212 19 C -0.044 4.044 20 H 0.118 0.882 21 C 0.329 3.671 22 O -0.422 6.422 23 O -0.327 6.327 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -7.788 2.880 16.523 18.492 hybrid contribution 1.143 0.508 -0.625 1.399 sum -6.645 3.389 15.897 17.560 Atomic orbital electron populations 1.22420 0.95750 1.02603 1.02601 1.21768 0.93039 0.96572 0.90975 0.93370 1.18946 0.94712 0.94524 0.91295 1.21438 0.93683 1.32301 1.06346 0.93584 1.25735 1.02401 0.95748 0.95804 1.70058 1.36849 1.37934 1.12959 0.85740 0.81353 0.78220 0.77087 1.20517 1.20415 1.19975 1.64285 1.55884 1.02995 0.99723 1.23281 0.97943 0.90472 0.97522 1.22624 1.02780 0.96706 0.92894 1.21988 1.02056 0.92552 0.93046 0.85935 1.22035 0.97392 1.03514 0.98214 1.22243 0.92815 0.95549 0.93841 0.88172 1.23587 0.90556 0.78616 0.74353 1.90751 1.28885 1.70158 1.52429 1.84489 1.45572 1.41542 1.61056 0.91960 0.91756 0.90607 0.98083 0.98601 0.93161 0.91024 0.92589 0.87414 0.92300 0.90942 0.89500 0.95038 0.71853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.47 8.20 71.98 0.59 -4.88 16 2 C 0.08 3.55 2.23 44.92 0.10 3.65 16 3 H 0.05 2.15 8.11 -2.39 -0.02 2.13 16 4 C 0.04 2.28 4.45 29.85 0.13 2.41 16 5 C -0.50 -30.38 8.84 25.60 0.23 -30.15 16 6 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 9 Si 0.95 48.84 29.54 68.60 2.03 50.87 16 10 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.27 -13.76 7.11 99.48 0.71 -13.06 16 13 N -0.50 -19.58 4.17 -837.42 -3.49 -23.07 16 14 C 0.03 1.14 5.55 86.65 0.48 1.62 16 15 C -0.11 -2.77 6.61 31.80 0.21 -2.56 16 16 C -0.08 -1.72 3.59 -9.91 -0.04 -1.75 16 17 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 18 C -0.15 -3.28 7.93 71.98 0.57 -2.71 16 19 C 0.07 1.95 2.73 44.31 0.12 2.07 16 20 H 0.10 2.56 5.97 -2.39 -0.01 2.55 16 21 C 0.49 15.94 5.43 71.23 0.39 16.33 16 22 O -0.53 -23.28 17.16 21.94 0.38 -22.90 16 23 O -0.51 -11.85 12.29 -51.45 -0.63 -12.48 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.96 6.39 -2.39 -0.02 1.94 16 26 H 0.08 1.86 6.24 -2.39 -0.01 1.85 16 27 H 0.00 0.05 7.07 -2.39 -0.02 0.03 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.07 2.03 5.47 -2.39 -0.01 2.02 16 31 H 0.06 2.23 7.64 -2.39 -0.02 2.21 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.67 7.84 -2.39 -0.02 1.65 16 34 H 0.07 1.41 6.62 -2.39 -0.02 1.39 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.03 0.87 7.42 -2.39 -0.02 0.85 16 37 H 0.42 6.47 9.10 -74.06 -0.67 5.79 16 Total: -1.00 -77.01 293.40 2.20 -74.81 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.39 Total: 7.08 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 3.25 Total: -15.55 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -3.21 Total: -81.83 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.26 Total: -35.39 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -77.01 2.20 -74.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695707233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.502 kcal (2) G-P(sol) polarization free energy of solvation -77.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds