Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 C 1.53008 * 109.46778 * 119.99357 * 2 1 3 5 5 C 1.50700 * 109.46708 * 179.56122 * 4 2 1 6 6 H 1.08003 * 120.00161 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46904 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47009 * 299.99639 * 9 7 5 12 12 H 1.48494 * 109.47059 * 59.99777 * 9 7 5 13 13 N 1.46891 * 109.47265 * 239.99232 * 2 1 3 14 14 C 1.47445 * 111.00253 * 299.43135 * 13 2 1 15 15 C 1.54322 * 107.23373 * 123.25751 * 14 13 2 16 16 C 1.55145 * 103.01898 * 22.28269 * 15 14 13 17 17 C 1.47849 * 110.99862 * 60.27408 * 13 2 1 18 18 H 1.09005 * 110.37281 * 332.46372 * 17 13 2 19 19 C 1.53002 * 110.37394 * 94.80535 * 17 13 2 20 20 C 1.50693 * 109.47079 * 288.95032 * 19 17 13 21 21 O 1.20832 * 120.00447 * 334.98361 * 20 19 17 22 22 O 1.34228 * 120.00166 * 154.97843 * 20 19 17 23 23 H 1.09000 * 109.47073 * 49.73291 * 1 2 3 24 24 H 1.08997 * 109.47102 * 169.73427 * 1 2 3 25 25 H 1.09005 * 109.47116 * 289.73401 * 1 2 3 26 26 H 1.09000 * 109.47034 * 59.56265 * 4 2 1 27 27 H 1.08998 * 109.47083 * 299.55676 * 4 2 1 28 28 H 0.97003 * 119.99779 * 0.02562 * 8 7 5 29 29 H 1.08996 * 109.88394 * 242.65905 * 14 13 2 30 30 H 1.09001 * 109.88746 * 3.85141 * 14 13 2 31 31 H 1.08992 * 110.70770 * 140.66554 * 15 14 13 32 32 H 1.08998 * 110.70461 * 263.72572 * 15 14 13 33 33 H 1.08996 * 110.99072 * 82.44067 * 16 15 14 34 34 H 1.08996 * 110.98884 * 206.25450 * 16 15 14 35 35 H 1.09004 * 109.46858 * 48.95139 * 19 17 13 36 36 H 1.08998 * 109.46955 * 168.95102 * 19 17 13 37 37 H 0.96700 * 117.00537 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5469 -0.7306 1.2440 6 1 4.0869 -0.2688 0.4306 7 6 4.2363 -1.3296 2.2769 8 7 3.5787 -1.8924 3.2671 9 14 6.1043 -1.3420 2.2698 10 1 6.5992 -2.0418 3.4825 11 1 6.5900 -2.0482 1.0573 12 1 6.6084 0.0548 2.2645 13 7 2.0197 -0.6926 -1.1993 14 6 1.5581 -2.0927 -1.2264 15 6 0.7887 -2.2949 -2.5487 16 6 1.3434 -1.1624 -3.4525 17 6 1.5510 -0.0185 -2.4289 18 1 0.6102 0.4994 -2.2426 19 6 2.6099 0.9633 -2.9347 20 6 2.6832 2.1464 -2.0043 21 8 1.7251 2.4467 -1.3320 22 8 3.8129 2.8666 -1.9221 23 1 -0.3633 0.6642 -0.7841 24 1 -0.3633 -1.0112 -0.1831 25 1 -0.3634 0.3470 0.9674 26 1 1.6702 -1.7465 1.2534 27 1 1.6831 -0.2027 2.1393 28 1 2.6087 -1.8863 3.2706 29 1 2.4144 -2.7661 -1.1889 30 1 0.8975 -2.2818 -0.3803 31 1 1.0090 -3.2726 -2.9771 32 1 -0.2835 -2.1768 -2.3927 33 1 2.2892 -1.4548 -3.9086 34 1 0.6162 -0.8785 -4.2132 35 1 3.5796 0.4665 -2.9680 36 1 2.3415 1.3036 -3.9348 37 1 3.8123 3.6161 -1.3111 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695707266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -97.145364 kcal Electronic energy + Delta-G solvation = -18741.563130 eV Core-core repulsion = 15904.410671 eV Total energy + Delta-G solvation = -2837.152459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27817 -38.78907 -35.79567 -34.39978 -32.20461 -31.54258 -28.36124 -27.03402 -26.40994 -22.96675 -22.13037 -21.19978 -20.04560 -18.42279 -17.78163 -16.67065 -16.57102 -16.07481 -15.27914 -14.69639 -13.78891 -13.68098 -13.46483 -13.15687 -12.84613 -12.69401 -12.16910 -11.76388 -11.54879 -11.39298 -11.21124 -11.06070 -11.03342 -10.98274 -10.71887 -10.55501 -10.28659 -10.21061 -10.05360 -9.85501 -9.16374 -8.43140 -8.16477 -7.47557 -6.17226 -3.82018 2.53301 3.36799 3.52861 3.55453 3.73824 4.43230 4.68550 4.85442 4.96762 5.23098 5.34494 5.47713 5.52117 5.59237 5.68702 5.81975 5.88125 5.92864 5.98003 6.00291 6.07855 6.13574 6.27313 6.45877 6.61873 6.66754 6.73719 6.81464 7.01115 7.34587 7.56450 7.81256 7.96998 8.20907 8.45623 8.72013 9.08820 9.87012 11.22866 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.009434 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.751287 B = 2967.280038 C = 3520.656806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 H 0.087 0.913 4 C 0.014 3.986 5 C -0.567 4.567 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 1.067 2.933 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.497 5.497 14 C 0.050 3.950 15 C -0.142 4.142 16 C -0.120 4.120 17 C 0.066 3.934 18 H 0.070 0.930 19 C -0.097 4.097 20 C 0.485 3.515 21 O -0.512 6.512 22 O -0.519 6.519 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.007 0.993 27 H 0.006 0.994 28 H 0.265 0.735 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 4.287 -14.396 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.105 0.895 4 C -0.023 4.023 5 C -0.606 4.606 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.562 5.562 9 Si 0.897 3.103 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.218 1.218 13 N -0.221 5.221 14 C -0.078 4.078 15 C -0.181 4.181 16 C -0.158 4.158 17 C -0.043 4.043 18 H 0.088 0.912 19 C -0.135 4.135 20 C 0.328 3.672 21 O -0.401 6.401 22 O -0.331 6.331 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.221 3.542 -13.593 14.222 hybrid contribution -2.259 0.999 -0.366 2.497 sum -4.481 4.541 -13.959 15.348 Atomic orbital electron populations 1.22495 0.99850 1.00349 1.01168 1.22092 0.90175 0.99408 0.91116 0.89492 1.19373 0.97550 0.94428 0.90918 1.21936 0.91000 1.38934 1.08745 0.92816 1.25766 1.06631 0.94098 0.92994 1.70789 1.09692 1.43232 1.32475 0.83568 0.74960 0.76108 0.75713 1.21195 1.21578 1.21772 1.63658 1.56883 1.01029 1.00496 1.22709 0.98368 0.91158 0.95579 1.22831 0.99625 0.98738 0.96902 1.22676 1.01239 0.94950 0.96927 1.22536 0.95804 0.94248 0.91747 0.91202 1.21352 1.03639 0.91751 0.96748 1.23457 0.79465 0.82948 0.81348 1.90664 1.38010 1.68490 1.42911 1.84531 1.40497 1.44450 1.63578 0.93413 0.93466 0.92950 0.97507 0.97605 0.92498 0.90651 0.92236 0.91205 0.92089 0.90539 0.91384 0.87389 0.87929 0.73577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 8.54 37.16 0.32 -3.13 16 2 C 0.08 1.75 1.96 -67.71 -0.13 1.62 16 3 H 0.09 2.05 4.80 -51.93 -0.25 1.81 16 4 C 0.01 0.38 3.51 -27.88 -0.10 0.28 16 5 C -0.57 -16.43 8.73 -34.44 -0.30 -16.73 16 6 H 0.05 1.57 7.65 -52.48 -0.40 1.17 16 7 C 0.01 0.20 5.46 -17.82 -0.10 0.11 16 8 N -0.92 -29.11 13.65 55.43 0.76 -28.35 16 9 Si 1.07 26.35 29.90 -169.99 -5.08 21.26 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.50 -9.64 4.31 -215.47 -0.93 -10.57 16 14 C 0.05 0.90 5.45 -2.83 -0.02 0.89 16 15 C -0.14 -1.94 6.94 -24.90 -0.17 -2.11 16 16 C -0.12 -1.48 6.50 -24.59 -0.16 -1.64 16 17 C 0.07 1.01 2.10 -66.18 -0.14 0.87 16 18 H 0.07 1.14 5.17 -51.93 -0.27 0.87 16 19 C -0.10 -1.32 5.51 -27.88 -0.15 -1.47 16 20 C 0.48 7.70 7.41 36.00 0.27 7.97 16 21 O -0.51 -9.52 14.00 -18.76 -0.26 -9.79 16 22 O -0.52 -7.20 13.42 -39.25 -0.53 -7.73 16 23 H 0.05 0.85 6.45 -51.93 -0.33 0.52 16 24 H 0.05 0.85 6.13 -51.93 -0.32 0.53 16 25 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 26 H 0.01 0.19 6.35 -51.93 -0.33 -0.14 16 27 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 28 H 0.26 8.35 7.22 -40.82 -0.29 8.05 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.06 1.17 4.83 -51.93 -0.25 0.92 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.41 4.10 9.10 45.56 0.41 4.52 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -33.92 289.44 -6.99 -40.91 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.62 Total: 3.26 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.69 Total: -13.35 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.17 Total: -38.92 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.79 Total: -17.52 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.08 Total: 21.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.92 -6.99 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695707266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.237 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds