Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 C 1.53008 * 109.46778 * 119.99357 * 2 1 3 5 5 C 1.50700 * 109.46708 * 179.56122 * 4 2 1 6 6 H 1.08003 * 120.00161 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46904 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47009 * 299.99639 * 9 7 5 12 12 H 1.48494 * 109.47059 * 59.99777 * 9 7 5 13 13 N 1.46891 * 109.47265 * 239.99232 * 2 1 3 14 14 C 1.47445 * 111.00253 * 299.43135 * 13 2 1 15 15 C 1.54322 * 107.23373 * 123.25751 * 14 13 2 16 16 C 1.55145 * 103.01898 * 22.28269 * 15 14 13 17 17 C 1.47849 * 110.99862 * 60.27408 * 13 2 1 18 18 H 1.09005 * 110.37281 * 332.46372 * 17 13 2 19 19 C 1.53002 * 110.37394 * 94.80535 * 17 13 2 20 20 C 1.50693 * 109.47079 * 288.95032 * 19 17 13 21 21 O 1.20832 * 120.00447 * 334.98361 * 20 19 17 22 22 O 1.34228 * 120.00166 * 154.97843 * 20 19 17 23 23 H 1.09000 * 109.47073 * 49.73291 * 1 2 3 24 24 H 1.08997 * 109.47102 * 169.73427 * 1 2 3 25 25 H 1.09005 * 109.47116 * 289.73401 * 1 2 3 26 26 H 1.09000 * 109.47034 * 59.56265 * 4 2 1 27 27 H 1.08998 * 109.47083 * 299.55676 * 4 2 1 28 28 H 0.97003 * 119.99779 * 0.02562 * 8 7 5 29 29 H 1.08996 * 109.88394 * 242.65905 * 14 13 2 30 30 H 1.09001 * 109.88746 * 3.85141 * 14 13 2 31 31 H 1.08992 * 110.70770 * 140.66554 * 15 14 13 32 32 H 1.08998 * 110.70461 * 263.72572 * 15 14 13 33 33 H 1.08996 * 110.99072 * 82.44067 * 16 15 14 34 34 H 1.08996 * 110.98884 * 206.25450 * 16 15 14 35 35 H 1.09004 * 109.46858 * 48.95139 * 19 17 13 36 36 H 1.08998 * 109.46955 * 168.95102 * 19 17 13 37 37 H 0.96700 * 117.00537 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5469 -0.7306 1.2440 6 1 4.0869 -0.2688 0.4306 7 6 4.2363 -1.3296 2.2769 8 7 3.5787 -1.8924 3.2671 9 14 6.1043 -1.3420 2.2698 10 1 6.5992 -2.0418 3.4825 11 1 6.5900 -2.0482 1.0573 12 1 6.6084 0.0548 2.2645 13 7 2.0197 -0.6926 -1.1993 14 6 1.5581 -2.0927 -1.2264 15 6 0.7887 -2.2949 -2.5487 16 6 1.3434 -1.1624 -3.4525 17 6 1.5510 -0.0185 -2.4289 18 1 0.6102 0.4994 -2.2426 19 6 2.6099 0.9633 -2.9347 20 6 2.6832 2.1464 -2.0043 21 8 1.7251 2.4467 -1.3320 22 8 3.8129 2.8666 -1.9221 23 1 -0.3633 0.6642 -0.7841 24 1 -0.3633 -1.0112 -0.1831 25 1 -0.3634 0.3470 0.9674 26 1 1.6702 -1.7465 1.2534 27 1 1.6831 -0.2027 2.1393 28 1 2.6087 -1.8863 3.2706 29 1 2.4144 -2.7661 -1.1889 30 1 0.8975 -2.2818 -0.3803 31 1 1.0090 -3.2726 -2.9771 32 1 -0.2835 -2.1768 -2.3927 33 1 2.2892 -1.4548 -3.9086 34 1 0.6162 -0.8785 -4.2132 35 1 3.5796 0.4665 -2.9680 36 1 2.3415 1.3036 -3.9348 37 1 3.8123 3.6161 -1.3111 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695707266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -121.481019 kcal Electronic energy + Delta-G solvation = -18742.618403 eV Core-core repulsion = 15904.410671 eV Total energy + Delta-G solvation = -2838.207733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54331 -40.12690 -36.99617 -36.20711 -34.17874 -32.71902 -29.85335 -28.96618 -27.69109 -25.08920 -23.56053 -22.41506 -21.37843 -19.93485 -18.99162 -18.75202 -17.99110 -17.29871 -16.60472 -15.95802 -15.65077 -15.38958 -15.05922 -14.65651 -14.36430 -14.03808 -13.53534 -13.25021 -13.03985 -13.00262 -12.91706 -12.60813 -12.52385 -12.40828 -12.16152 -11.96044 -11.91552 -11.65055 -11.45879 -11.42862 -10.97431 -10.62910 -10.46269 -8.98196 -8.57911 -6.23175 1.33623 1.52021 1.61489 1.80266 2.31896 2.61167 3.08132 3.27436 3.71751 3.81525 4.06655 4.15774 4.22210 4.32041 4.40662 4.47892 4.52360 4.60013 4.74138 4.82045 4.89743 4.96910 4.98328 5.01711 5.09452 5.13509 5.20779 5.27169 5.43872 5.55697 5.76599 6.09974 6.31751 6.33342 6.41333 6.71857 7.08579 7.55045 8.82393 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.009434 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.751287 B = 2967.280038 C = 3520.656806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.071 0.929 4 C 0.019 3.981 5 C -0.570 4.570 6 H 0.050 0.950 7 C -0.048 4.048 8 N -0.949 5.949 9 Si 1.116 2.884 10 H -0.288 1.288 11 H -0.269 1.269 12 H -0.273 1.273 13 N -0.516 5.516 14 C 0.046 3.954 15 C -0.132 4.132 16 C -0.107 4.107 17 C 0.061 3.939 18 H 0.062 0.938 19 C -0.095 4.095 20 C 0.479 3.521 21 O -0.547 6.547 22 O -0.518 6.518 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.041 0.959 26 H -0.010 1.010 27 H -0.025 1.025 28 H 0.249 0.751 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 4.509 -17.256 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 H 0.089 0.911 4 C -0.018 4.018 5 C -0.608 4.608 6 H 0.068 0.932 7 C -0.243 4.243 8 N -0.588 5.588 9 Si 0.938 3.062 10 H -0.213 1.213 11 H -0.194 1.194 12 H -0.198 1.198 13 N -0.240 5.240 14 C -0.082 4.082 15 C -0.171 4.171 16 C -0.145 4.145 17 C -0.047 4.047 18 H 0.080 0.920 19 C -0.133 4.133 20 C 0.324 3.676 21 O -0.438 6.438 22 O -0.331 6.331 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.008 0.992 27 H -0.007 1.007 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.165 0.835 37 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.675 3.785 -16.481 16.993 hybrid contribution -2.436 0.965 0.537 2.675 sum -4.111 4.750 -15.944 17.137 Atomic orbital electron populations 1.22356 0.97891 1.01224 1.01252 1.21717 0.91686 0.97863 0.90443 0.91083 1.19274 0.96600 0.93617 0.92328 1.22189 0.92248 1.38086 1.08305 0.93169 1.27323 1.11136 0.93351 0.92507 1.70930 1.08856 1.45201 1.33806 0.82952 0.69621 0.77285 0.76369 1.21327 1.19441 1.19796 1.63537 1.57738 1.01639 1.01072 1.22659 0.97618 0.90309 0.97626 1.22776 0.99404 1.00535 0.94363 1.22696 1.02793 0.92588 0.96380 1.22693 0.95917 0.95348 0.90721 0.91966 1.21493 1.03107 0.90427 0.98242 1.24022 0.79203 0.83332 0.81084 1.90650 1.39219 1.69594 1.44387 1.84504 1.39685 1.44997 1.63930 0.91685 0.92634 0.93942 0.99190 1.00728 0.94137 0.92915 0.94742 0.89231 0.91224 0.89323 0.87921 0.87438 0.83451 0.71953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.49 8.54 71.98 0.61 -5.87 16 2 C 0.09 4.08 1.96 44.92 0.09 4.17 16 3 H 0.07 3.42 4.80 -2.39 -0.01 3.41 16 4 C 0.02 1.04 3.51 29.85 0.10 1.15 16 5 C -0.57 -33.76 8.73 25.60 0.22 -33.53 16 6 H 0.05 2.96 7.65 -2.91 -0.02 2.94 16 7 C -0.05 -2.89 5.46 84.65 0.46 -2.43 16 8 N -0.95 -61.50 13.65 21.45 0.29 -61.21 16 9 Si 1.12 52.89 29.90 68.60 2.05 54.94 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 N -0.52 -19.73 4.31 -835.61 -3.60 -23.32 16 14 C 0.05 1.65 5.45 86.65 0.47 2.12 16 15 C -0.13 -3.23 6.94 31.78 0.22 -3.01 16 16 C -0.11 -2.18 6.50 31.98 0.21 -1.97 16 17 C 0.06 1.73 2.10 45.39 0.10 1.82 16 18 H 0.06 1.87 5.17 -2.38 -0.01 1.86 16 19 C -0.09 -2.30 5.51 29.85 0.16 -2.14 16 20 C 0.48 14.48 7.41 71.23 0.53 15.00 16 21 O -0.55 -20.02 14.00 21.95 0.31 -19.71 16 22 O -0.52 -13.56 13.42 -51.40 -0.69 -14.25 16 23 H 0.06 2.27 6.45 -2.39 -0.02 2.26 16 24 H 0.05 2.01 6.13 -2.39 -0.01 2.00 16 25 H 0.04 1.67 8.11 -2.38 -0.02 1.65 16 26 H -0.01 -0.58 6.35 -2.39 -0.02 -0.60 16 27 H -0.03 -1.54 8.01 -2.39 -0.02 -1.56 16 28 H 0.25 16.50 7.22 -92.71 -0.67 15.83 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.03 1.39 4.83 -2.39 -0.01 1.38 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.64 8.06 -2.39 -0.02 1.63 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.42 8.03 9.10 -74.06 -0.67 7.36 16 Total: -1.00 -75.69 289.44 2.04 -73.65 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.50 Total: 14.60 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 3.18 Total: -24.69 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.31 Total: -84.53 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.38 Total: -33.97 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 2.05 Total: 54.94 kcal Total: -75.69 2.04 -73.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695707266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.833 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds