Wall clock time and date at job start Mon Mar 30 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99554 * 2 1 4 4 O 1.20829 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00041 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.87787 * 6.12623 * 5 3 2 7 7 C 1.54319 * 109.88840 * 127.32328 * 5 3 2 8 8 C 1.55141 * 103.01627 * 141.69151 * 7 5 3 9 9 C 1.54900 * 101.65501 * 324.34803 * 8 7 5 10 10 N 1.47441 * 109.88945 * 245.09408 * 5 3 2 11 11 C 1.46897 * 111.00380 * 3.85434 * 10 5 3 12 12 H 1.09001 * 109.46830 * 32.83687 * 11 10 5 13 13 C 1.53001 * 109.46956 * 272.84357 * 11 10 5 14 14 C 1.52995 * 109.47616 * 152.83856 * 11 10 5 15 15 C 1.50704 * 109.47047 * 294.99894 * 14 11 10 16 16 H 1.07995 * 120.00055 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99716 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99683 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47301 * 90.00359 * 19 17 15 21 21 H 1.48500 * 109.47024 * 209.99928 * 19 17 15 22 22 H 1.48501 * 109.47458 * 330.00308 * 19 17 15 23 23 H 1.08994 * 109.47237 * 299.99739 * 1 2 3 24 24 H 1.08998 * 109.47161 * 59.99915 * 1 2 3 25 25 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 26 26 H 1.08994 * 110.70832 * 260.07537 * 7 5 3 27 27 H 1.08998 * 110.70587 * 23.30819 * 7 5 3 28 28 H 1.08998 * 110.99074 * 82.44448 * 8 7 5 29 29 H 1.09001 * 110.98881 * 206.25319 * 8 7 5 30 30 H 1.09004 * 110.37177 * 278.24235 * 9 8 7 31 31 H 1.08999 * 110.37349 * 155.90238 * 9 8 7 32 32 H 1.08998 * 109.47451 * 39.78952 * 13 11 10 33 33 H 1.09009 * 109.46813 * 279.79094 * 13 11 10 34 34 H 1.08993 * 109.47260 * 159.79437 * 13 11 10 35 35 H 1.09003 * 109.47233 * 54.99556 * 14 11 10 36 36 H 1.08997 * 109.47562 * 175.00158 * 14 11 10 37 37 H 0.97005 * 119.99785 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9898 0.2767 -0.1084 7 6 4.0448 2.1810 -1.1534 8 6 5.2404 2.9446 -0.5254 9 6 4.7591 3.1330 0.9348 10 7 4.0360 1.8847 1.2582 11 6 2.9129 2.1473 2.1678 12 1 2.1487 1.3820 2.0318 13 6 2.3177 3.5227 1.8593 14 6 3.4106 2.1197 3.6142 15 6 3.8840 0.7303 3.9561 16 1 3.8351 -0.0543 3.2156 17 6 4.3804 0.4613 5.2139 18 7 4.4405 1.4169 6.1155 19 14 4.9678 -1.2606 5.6374 20 1 6.4114 -1.3852 5.3124 21 1 4.7635 -1.5108 7.0869 22 1 4.1956 -2.2549 4.8498 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 4.3734 1.5821 -2.0027 27 1 3.2581 2.8743 -1.4508 28 1 6.1497 2.3447 -0.5625 29 1 5.3894 3.9071 -1.0148 30 1 4.0883 3.9893 1.0057 31 1 5.6116 3.2615 1.6018 32 1 2.2948 3.6750 0.7803 33 1 2.9307 4.2960 2.3225 34 1 1.3038 3.5770 2.2556 35 1 4.2357 2.8229 3.7281 36 1 2.5980 2.4015 4.2836 37 1 4.7894 1.2274 7.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:06 Heat of formation + Delta-G solvation = -66.367890 kcal Electronic energy + Delta-G solvation = -18753.618367 eV Core-core repulsion = 15917.800519 eV Total energy + Delta-G solvation = -2835.817848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99513 -38.43845 -36.00567 -34.20934 -32.13200 -29.98057 -28.51882 -27.35811 -27.14202 -23.39483 -22.66396 -21.58334 -20.31715 -18.69733 -17.37516 -16.63299 -16.39882 -15.93090 -15.26648 -14.89758 -14.36482 -13.93792 -13.53418 -13.37426 -12.52418 -12.23647 -12.19285 -11.97862 -11.84023 -11.60921 -11.40736 -11.29732 -10.92890 -10.84783 -10.61913 -10.57070 -10.50789 -10.28111 -9.94397 -9.84998 -9.14376 -8.94808 -8.23141 -7.64834 -5.85340 -3.83363 2.39692 2.94943 3.41723 3.47152 3.51575 4.45282 4.59203 4.66467 4.89985 5.03878 5.21234 5.28043 5.31520 5.51622 5.58628 5.62359 5.69071 5.82261 5.85241 5.91397 5.99707 6.08630 6.23230 6.36539 6.40243 6.55945 6.60836 6.81486 7.07632 7.41195 7.46309 7.81157 7.96169 8.01979 8.13973 8.60493 9.21311 9.77886 11.26652 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.008507 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.575554 B = 3290.628311 C = 3738.281736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.456 3.544 4 O -0.505 6.505 5 C 0.078 3.922 6 H 0.109 0.891 7 C -0.131 4.131 8 C -0.125 4.125 9 C 0.027 3.973 10 N -0.473 5.473 11 C 0.075 3.925 12 H 0.059 0.941 13 C -0.179 4.179 14 C 0.037 3.963 15 C -0.490 4.490 16 H 0.058 0.942 17 C 0.051 3.949 18 N -0.903 5.903 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.275 1.275 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.020 0.980 36 H 0.018 0.982 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 0.864 -14.716 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.298 3.702 4 O -0.393 6.393 5 C -0.031 4.031 6 H 0.126 0.874 7 C -0.169 4.169 8 C -0.163 4.163 9 C -0.101 4.101 10 N -0.198 5.198 11 C -0.033 4.033 12 H 0.077 0.923 13 C -0.237 4.237 14 C 0.000 4.000 15 C -0.529 4.529 16 H 0.076 0.924 17 C -0.149 4.149 18 N -0.544 5.544 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.200 1.200 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.976 0.822 -14.266 14.596 hybrid contribution -0.499 -0.425 0.110 0.665 sum -3.475 0.397 -14.157 14.582 Atomic orbital electron populations 1.23202 0.77067 1.03371 1.02224 1.86580 1.22948 1.33913 1.83872 1.24366 0.92923 0.81328 0.71540 1.90631 1.67356 1.35675 1.45608 1.22639 0.85220 1.02235 0.93038 0.87365 1.22843 0.98959 0.98333 0.96777 1.22692 0.97712 1.00092 0.95803 1.23390 0.98916 0.92539 0.95209 1.64382 1.23731 1.24705 1.07013 1.22268 0.90016 0.94229 0.96765 0.92284 1.22683 1.00201 0.98622 1.02169 1.19114 0.96146 0.97774 0.86998 1.21147 1.39676 0.95396 0.96658 0.92396 1.24997 0.96477 0.96725 0.96655 1.69970 1.47624 1.32083 1.04756 0.86625 0.79117 0.85280 0.77124 1.20834 1.21631 1.20013 0.91852 0.92372 0.88410 0.90359 0.90559 0.90443 0.90849 0.91742 0.89561 0.90746 0.93224 0.93334 0.96170 0.96386 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.36 -5.83 10.57 -39.27 -0.41 -6.24 16 3 C 0.46 7.85 4.42 36.00 0.16 8.01 16 4 O -0.51 -9.23 11.56 -18.75 -0.22 -9.45 16 5 C 0.08 1.29 3.77 -67.88 -0.26 1.03 16 6 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 7 C -0.13 -1.69 6.43 -24.91 -0.16 -1.85 16 8 C -0.12 -1.59 7.08 -24.60 -0.17 -1.76 16 9 C 0.03 0.45 6.11 -2.30 -0.01 0.43 16 10 N -0.47 -9.25 4.74 -216.82 -1.03 -10.27 16 11 C 0.07 1.63 1.77 -67.72 -0.12 1.51 16 12 H 0.06 1.37 5.82 -51.93 -0.30 1.07 16 13 C -0.18 -3.48 6.37 37.16 0.24 -3.24 16 14 C 0.04 0.98 4.49 -27.88 -0.13 0.86 16 15 C -0.49 -14.12 8.84 -34.44 -0.30 -14.42 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 17 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 18 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 19 Si 0.89 22.37 29.54 -169.99 -5.02 17.34 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.02 7.38 -51.93 -0.38 0.64 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.07 4.65 -51.93 -0.24 0.83 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.07 1.38 4.92 -51.93 -0.26 1.13 16 33 H 0.05 0.94 7.12 -51.92 -0.37 0.57 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.56 8.05 -51.93 -0.42 0.15 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -32.24 291.69 -7.08 -39.32 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.74 Total: -1.59 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.21 Total: -6.53 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.29 Total: -37.24 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.63 Total: -15.69 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.24 -7.08 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.048 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds