Wall clock time and date at job start Mon Mar 30 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99554 * 2 1 4 4 O 1.20829 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00041 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.87787 * 6.12623 * 5 3 2 7 7 C 1.54319 * 109.88840 * 127.32328 * 5 3 2 8 8 C 1.55141 * 103.01627 * 141.69151 * 7 5 3 9 9 C 1.54900 * 101.65501 * 324.34803 * 8 7 5 10 10 N 1.47441 * 109.88945 * 245.09408 * 5 3 2 11 11 C 1.46897 * 111.00380 * 3.85434 * 10 5 3 12 12 H 1.09001 * 109.46830 * 32.83687 * 11 10 5 13 13 C 1.53001 * 109.46956 * 272.84357 * 11 10 5 14 14 C 1.52995 * 109.47616 * 152.83856 * 11 10 5 15 15 C 1.50704 * 109.47047 * 294.99894 * 14 11 10 16 16 H 1.07995 * 120.00055 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99716 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99683 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47301 * 90.00359 * 19 17 15 21 21 H 1.48500 * 109.47024 * 209.99928 * 19 17 15 22 22 H 1.48501 * 109.47458 * 330.00308 * 19 17 15 23 23 H 1.08994 * 109.47237 * 299.99739 * 1 2 3 24 24 H 1.08998 * 109.47161 * 59.99915 * 1 2 3 25 25 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 26 26 H 1.08994 * 110.70832 * 260.07537 * 7 5 3 27 27 H 1.08998 * 110.70587 * 23.30819 * 7 5 3 28 28 H 1.08998 * 110.99074 * 82.44448 * 8 7 5 29 29 H 1.09001 * 110.98881 * 206.25319 * 8 7 5 30 30 H 1.09004 * 110.37177 * 278.24235 * 9 8 7 31 31 H 1.08999 * 110.37349 * 155.90238 * 9 8 7 32 32 H 1.08998 * 109.47451 * 39.78952 * 13 11 10 33 33 H 1.09009 * 109.46813 * 279.79094 * 13 11 10 34 34 H 1.08993 * 109.47260 * 159.79437 * 13 11 10 35 35 H 1.09003 * 109.47233 * 54.99556 * 14 11 10 36 36 H 1.08997 * 109.47562 * 175.00158 * 14 11 10 37 37 H 0.97005 * 119.99785 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9898 0.2767 -0.1084 7 6 4.0448 2.1810 -1.1534 8 6 5.2404 2.9446 -0.5254 9 6 4.7591 3.1330 0.9348 10 7 4.0360 1.8847 1.2582 11 6 2.9129 2.1473 2.1678 12 1 2.1487 1.3820 2.0318 13 6 2.3177 3.5227 1.8593 14 6 3.4106 2.1197 3.6142 15 6 3.8840 0.7303 3.9561 16 1 3.8351 -0.0543 3.2156 17 6 4.3804 0.4613 5.2139 18 7 4.4405 1.4169 6.1155 19 14 4.9678 -1.2606 5.6374 20 1 6.4114 -1.3852 5.3124 21 1 4.7635 -1.5108 7.0869 22 1 4.1956 -2.2549 4.8498 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 4.3734 1.5821 -2.0027 27 1 3.2581 2.8743 -1.4508 28 1 6.1497 2.3447 -0.5625 29 1 5.3894 3.9071 -1.0148 30 1 4.0883 3.9893 1.0057 31 1 5.6116 3.2615 1.6018 32 1 2.2948 3.6750 0.7803 33 1 2.9307 4.2960 2.3225 34 1 1.3038 3.5770 2.2556 35 1 4.2357 2.8229 3.7281 36 1 2.5980 2.4015 4.2836 37 1 4.7894 1.2274 7.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:06 Heat of formation + Delta-G solvation = -87.638232 kcal Electronic energy + Delta-G solvation = -18754.540718 eV Core-core repulsion = 15917.800519 eV Total energy + Delta-G solvation = -2836.740199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.33633 -39.76985 -37.31705 -35.95497 -34.14916 -31.22054 -30.14031 -29.07933 -28.36673 -25.32707 -24.02904 -23.05758 -21.61869 -20.15526 -18.73231 -18.43140 -17.97978 -17.50292 -16.51848 -16.42687 -16.16921 -15.37597 -14.84688 -14.63568 -14.33587 -13.84870 -13.64616 -13.56485 -13.22984 -13.00150 -12.83681 -12.76438 -12.65311 -12.47444 -12.25899 -12.01790 -11.84488 -11.74772 -11.67245 -11.34347 -11.17263 -10.88137 -10.50588 -9.14225 -8.11332 -6.17609 1.07264 1.41761 1.43612 1.54357 1.77404 2.46886 3.01621 3.23961 3.50371 3.75365 3.86372 4.09201 4.20151 4.26903 4.30253 4.34934 4.41150 4.47329 4.60535 4.65939 4.78923 4.89649 4.93747 5.03098 5.09087 5.12951 5.20068 5.32930 5.41052 5.47526 5.58526 5.84623 6.11134 6.14585 6.39123 6.71641 6.94350 7.48237 9.00949 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.008507 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.575554 B = 3290.628311 C = 3738.281736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.453 3.547 4 O -0.521 6.521 5 C 0.072 3.928 6 H 0.114 0.886 7 C -0.119 4.119 8 C -0.111 4.111 9 C 0.020 3.980 10 N -0.499 5.499 11 C 0.089 3.911 12 H 0.044 0.956 13 C -0.164 4.164 14 C 0.044 3.956 15 C -0.503 4.503 16 H 0.056 0.944 17 C -0.005 4.005 18 N -0.940 5.940 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.129 0.871 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.040 0.960 35 H -0.004 1.004 36 H -0.014 1.014 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.631 -0.194 -16.700 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.297 3.703 4 O -0.410 6.410 5 C -0.037 4.037 6 H 0.132 0.868 7 C -0.158 4.158 8 C -0.149 4.149 9 C -0.107 4.107 10 N -0.224 5.224 11 C -0.019 4.019 12 H 0.062 0.938 13 C -0.222 4.222 14 C 0.007 3.993 15 C -0.541 4.541 16 H 0.074 0.926 17 C -0.201 4.201 18 N -0.582 5.582 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.147 0.853 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.014 0.986 36 H 0.005 0.995 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.506 -0.244 -16.271 16.465 hybrid contribution -0.690 -0.104 0.738 1.016 sum -3.196 -0.347 -15.533 15.862 Atomic orbital electron populations 1.23498 0.75176 1.05532 1.02245 1.86557 1.24909 1.33455 1.83522 1.24519 0.93307 0.81393 0.71100 1.90603 1.67779 1.36158 1.46446 1.22772 0.84970 1.03096 0.92902 0.86773 1.22847 0.98690 0.97923 0.96298 1.22677 0.97798 1.01773 0.92668 1.23448 0.98053 0.91390 0.97847 1.64150 1.23115 1.26376 1.08799 1.21850 0.90395 0.95013 0.94619 0.93805 1.22551 0.99447 0.97248 1.02998 1.18941 0.94118 0.96316 0.89920 1.21413 1.39659 0.96152 0.96856 0.92575 1.25899 0.96570 1.01113 0.96538 1.70106 1.48452 1.34402 1.05199 0.85507 0.78853 0.80037 0.76987 1.19906 1.21115 1.18996 0.93248 0.90935 0.85286 0.87061 0.90721 0.89481 0.88058 0.91913 0.91334 0.89250 0.93287 0.94041 0.98576 0.99535 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.37 -11.59 10.57 -51.46 -0.54 -12.14 16 3 C 0.45 15.13 4.42 71.24 0.31 15.44 16 4 O -0.52 -18.55 11.56 21.95 0.25 -18.29 16 5 C 0.07 2.25 3.77 44.51 0.17 2.41 16 6 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 7 C -0.12 -2.70 6.43 31.78 0.20 -2.50 16 8 C -0.11 -2.50 7.08 31.98 0.23 -2.27 16 9 C 0.02 0.64 6.11 86.77 0.53 1.17 16 10 N -0.50 -19.37 4.74 -839.90 -3.98 -23.35 16 11 C 0.09 3.99 1.77 44.91 0.08 4.07 16 12 H 0.04 2.08 5.82 -2.39 -0.01 2.06 16 13 C -0.16 -6.48 6.37 71.98 0.46 -6.02 16 14 C 0.04 2.46 4.49 29.85 0.13 2.59 16 15 C -0.50 -29.54 8.84 25.60 0.23 -29.31 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 19 Si 0.96 46.05 29.54 68.60 2.03 48.07 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 24 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 25 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.75 7.38 -2.39 -0.02 1.74 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.05 4.65 -2.38 -0.01 2.04 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.09 3.26 4.92 -2.39 -0.01 3.25 16 33 H 0.05 1.90 7.12 -2.38 -0.02 1.88 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.00 -0.24 8.05 -2.39 -0.02 -0.26 16 36 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -70.49 291.69 3.08 -67.41 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.04 Total: 9.26 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.00 Total: -12.38 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.70 Total: -81.94 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.29 Total: -30.43 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.49 3.08 -67.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.226 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds