Wall clock time and date at job start Mon Mar 30 2020 04:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.56243 * 2 1 4 4 C 1.54475 * 110.50972 * 237.31683 * 2 1 3 5 5 O 1.44425 * 104.80492 * 217.37799 * 4 2 1 6 6 C 1.44428 * 105.27278 * 40.51311 * 5 4 2 7 7 C 1.54477 * 104.80399 * 319.49175 * 6 5 4 8 8 H 1.08998 * 110.51296 * 142.76271 * 7 6 5 9 9 C 1.50703 * 110.50711 * 265.33219 * 7 6 5 10 10 O 1.21283 * 120.00006 * 118.55202 * 9 7 6 11 11 N 1.34775 * 120.00069 * 298.54280 * 9 7 6 12 12 C 1.46506 * 119.99877 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46748 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47211 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 H 1.09000 * 109.47019 * 297.32455 * 1 2 3 24 24 H 1.09004 * 109.46824 * 57.32660 * 1 2 3 25 25 H 1.08998 * 109.47200 * 177.31973 * 1 2 3 26 26 H 1.09005 * 110.36900 * 98.54448 * 4 2 1 27 27 H 1.08998 * 110.47145 * 336.25932 * 4 2 1 28 28 H 1.08998 * 110.36948 * 200.65850 * 6 5 4 29 29 H 1.09004 * 110.46081 * 78.36678 * 6 5 4 30 30 H 0.97002 * 120.00050 * 0.02562 * 11 9 7 31 31 H 1.08995 * 109.46761 * 60.00339 * 12 11 9 32 32 H 1.08998 * 109.46975 * 300.00637 * 12 11 9 33 33 H 1.09000 * 109.47849 * 59.99921 * 13 12 11 34 34 H 1.09007 * 109.47288 * 299.99514 * 13 12 11 35 35 H 1.09000 * 109.47211 * 59.99130 * 14 13 12 36 36 H 1.09007 * 109.46376 * 299.99672 * 14 13 12 37 37 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7813 -1.2178 5 8 3.2398 -1.4715 -0.7238 6 6 2.8757 -1.9422 0.5922 7 6 2.0713 -0.7814 1.2181 8 1 1.2505 -1.1677 1.8223 9 6 2.9708 0.0955 2.0507 10 8 3.1183 1.2634 1.7589 11 7 3.6112 -0.4181 3.1196 12 6 4.4851 0.4346 3.9293 13 6 5.0844 -0.3882 5.0715 14 6 5.9967 0.5023 5.9175 15 6 6.5875 -0.3082 7.0422 16 1 6.3370 -1.3539 7.1437 17 6 7.4428 0.2866 7.9452 18 7 7.9542 -0.4194 8.9300 19 14 7.8756 2.0953 7.7699 20 1 6.8997 2.9141 8.5330 21 1 9.2422 2.3311 8.3013 22 1 7.8292 2.4787 6.3360 23 1 -0.3633 0.4717 0.9130 24 1 -0.3633 0.5548 -0.8651 25 1 -0.3633 -1.0265 -0.0481 26 1 2.3464 -0.0939 -2.0178 27 1 1.3294 -1.4970 -1.5719 28 1 3.7688 -2.1467 1.1826 29 1 2.2568 -2.8366 0.5192 30 1 3.4934 -1.3523 3.3528 31 1 3.9061 1.2610 4.3412 32 1 5.2876 0.8285 3.3056 33 1 5.6635 -1.2146 4.6592 34 1 4.2821 -0.7824 5.6952 35 1 5.4173 1.3284 6.3297 36 1 6.7990 0.8968 5.2939 37 1 8.5562 -0.0011 9.5650 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705257924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:23 Heat of formation + Delta-G solvation = -105.649339 kcal Electronic energy + Delta-G solvation = -17168.017263 eV Core-core repulsion = 14330.496043 eV Total energy + Delta-G solvation = -2837.521219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62199 -38.52393 -35.59650 -33.72978 -33.38628 -31.68527 -30.23507 -27.14660 -26.50600 -24.05839 -22.77985 -21.12294 -20.58199 -19.65592 -17.58026 -16.72042 -16.32582 -16.23400 -15.66985 -15.14923 -15.02935 -14.22717 -13.93420 -13.89751 -13.42087 -13.08094 -12.73476 -12.65257 -12.12032 -11.98615 -11.76851 -11.42421 -11.16440 -11.09518 -11.00613 -10.90274 -10.34546 -10.07674 -9.93248 -9.77433 -9.51578 -9.24266 -8.90829 -8.56721 -6.07571 -4.06435 2.63062 3.22603 3.30496 3.38221 3.42599 3.70707 4.09392 4.43436 4.50673 4.59463 4.71742 4.88415 5.08211 5.14448 5.25809 5.26521 5.34197 5.37805 5.45535 5.54026 5.63284 5.64875 5.79274 5.98878 6.03525 6.32486 6.42125 6.47640 6.66810 6.76880 7.20795 7.34405 7.57544 7.75034 8.26729 8.48881 8.96045 9.54691 11.05666 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049670 B = 0.003925 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.583732 B = 7131.858727 C = 7317.903524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.108 0.892 4 C 0.049 3.951 5 O -0.370 6.370 6 C 0.055 3.945 7 C -0.145 4.145 8 H 0.112 0.888 9 C 0.519 3.481 10 O -0.539 6.539 11 N -0.725 5.725 12 C 0.114 3.886 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.399 0.601 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.014 0.986 36 H 0.019 0.981 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.048 -2.550 -17.934 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 H 0.127 0.873 4 C -0.028 4.028 5 O -0.288 6.288 6 C -0.023 4.023 7 C -0.167 4.167 8 H 0.130 0.870 9 C 0.304 3.696 10 O -0.416 6.416 11 N -0.376 5.376 12 C -0.009 4.009 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.037 0.963 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.596 -1.713 -18.083 23.302 hybrid contribution 0.037 0.456 0.431 0.628 sum -14.560 -1.258 -17.653 22.917 Atomic orbital electron populations 1.21798 0.93684 1.01886 1.02536 1.22590 0.96553 1.02286 0.92384 0.87347 1.23563 0.87770 0.94881 0.96596 1.89172 1.35405 1.73746 1.30492 1.23417 0.99609 0.94781 0.84462 1.22815 0.98983 0.96987 0.97905 0.86961 1.20238 0.80405 0.88240 0.80721 1.90666 1.63685 1.17422 1.69867 1.46146 1.47800 1.14517 1.29102 1.21672 0.92816 0.93793 0.92623 1.21709 0.99477 0.98986 0.94956 1.19506 0.94554 0.95530 0.95333 1.21092 1.27199 0.98118 1.09630 0.91005 1.25028 0.95514 0.98047 0.94877 1.69912 1.32258 1.36509 1.15511 0.86775 0.77789 0.85711 0.79026 1.20242 1.21330 1.18902 0.92033 0.92002 0.92479 0.88924 0.92052 0.88526 0.91072 0.76683 0.91779 0.91718 0.92042 0.92119 0.96758 0.96287 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.97 37.16 0.33 -0.68 16 2 C -0.12 -1.15 3.30 -89.05 -0.29 -1.45 16 3 H 0.11 1.34 6.51 -51.93 -0.34 1.00 16 4 C 0.05 0.44 7.18 37.93 0.27 0.72 16 5 O -0.37 -4.42 11.65 -35.23 -0.41 -4.83 16 6 C 0.05 0.51 7.14 37.93 0.27 0.78 16 7 C -0.15 -1.44 3.16 -90.20 -0.28 -1.72 16 8 H 0.11 0.84 7.74 -51.93 -0.40 0.44 16 9 C 0.52 7.27 7.13 -10.98 -0.08 7.19 16 10 O -0.54 -9.73 15.29 5.56 0.08 -9.65 16 11 N -0.72 -9.70 5.26 -60.29 -0.32 -10.02 16 12 C 0.11 1.88 5.67 -4.04 -0.02 1.85 16 13 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 14 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 19 Si 0.88 21.76 27.46 -169.99 -4.67 17.09 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.26 -6.32 6.55 56.52 0.37 -5.95 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.44 7.83 -51.93 -0.41 0.03 16 28 H 0.10 0.90 7.44 -51.93 -0.39 0.52 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.40 4.17 8.26 -40.82 -0.34 3.84 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.01 0.33 7.56 -51.93 -0.39 -0.06 16 36 H 0.02 0.45 7.21 -51.93 -0.37 0.07 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 303.45 15.07 4.57 4.57 Total: -1.00 -33.45 303.45 -6.48 -39.93 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.03 Total: -1.04 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.49 Total: -9.10 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.46 Total: -36.98 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.33 Total: -14.47 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.45 -6.48 -39.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705257924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.721 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds