Wall clock time and date at job start Mon Mar 30 2020 04:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.56243 * 2 1 4 4 C 1.54475 * 110.50972 * 237.31683 * 2 1 3 5 5 O 1.44425 * 104.80492 * 217.37799 * 4 2 1 6 6 C 1.44428 * 105.27278 * 40.51311 * 5 4 2 7 7 C 1.54477 * 104.80399 * 319.49175 * 6 5 4 8 8 H 1.08998 * 110.51296 * 142.76271 * 7 6 5 9 9 C 1.50703 * 110.50711 * 265.33219 * 7 6 5 10 10 O 1.21283 * 120.00006 * 118.55202 * 9 7 6 11 11 N 1.34775 * 120.00069 * 298.54280 * 9 7 6 12 12 C 1.46506 * 119.99877 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46748 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47211 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 H 1.09000 * 109.47019 * 297.32455 * 1 2 3 24 24 H 1.09004 * 109.46824 * 57.32660 * 1 2 3 25 25 H 1.08998 * 109.47200 * 177.31973 * 1 2 3 26 26 H 1.09005 * 110.36900 * 98.54448 * 4 2 1 27 27 H 1.08998 * 110.47145 * 336.25932 * 4 2 1 28 28 H 1.08998 * 110.36948 * 200.65850 * 6 5 4 29 29 H 1.09004 * 110.46081 * 78.36678 * 6 5 4 30 30 H 0.97002 * 120.00050 * 0.02562 * 11 9 7 31 31 H 1.08995 * 109.46761 * 60.00339 * 12 11 9 32 32 H 1.08998 * 109.46975 * 300.00637 * 12 11 9 33 33 H 1.09000 * 109.47849 * 59.99921 * 13 12 11 34 34 H 1.09007 * 109.47288 * 299.99514 * 13 12 11 35 35 H 1.09000 * 109.47211 * 59.99130 * 14 13 12 36 36 H 1.09007 * 109.46376 * 299.99672 * 14 13 12 37 37 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7813 -1.2178 5 8 3.2398 -1.4715 -0.7238 6 6 2.8757 -1.9422 0.5922 7 6 2.0713 -0.7814 1.2181 8 1 1.2505 -1.1677 1.8223 9 6 2.9708 0.0955 2.0507 10 8 3.1183 1.2634 1.7589 11 7 3.6112 -0.4181 3.1196 12 6 4.4851 0.4346 3.9293 13 6 5.0844 -0.3882 5.0715 14 6 5.9967 0.5023 5.9175 15 6 6.5875 -0.3082 7.0422 16 1 6.3370 -1.3539 7.1437 17 6 7.4428 0.2866 7.9452 18 7 7.9542 -0.4194 8.9300 19 14 7.8756 2.0953 7.7699 20 1 6.8997 2.9141 8.5330 21 1 9.2422 2.3311 8.3013 22 1 7.8292 2.4787 6.3360 23 1 -0.3633 0.4717 0.9130 24 1 -0.3633 0.5548 -0.8651 25 1 -0.3633 -1.0265 -0.0481 26 1 2.3464 -0.0939 -2.0178 27 1 1.3294 -1.4970 -1.5719 28 1 3.7688 -2.1467 1.1826 29 1 2.2568 -2.8366 0.5192 30 1 3.4934 -1.3523 3.3528 31 1 3.9061 1.2610 4.3412 32 1 5.2876 0.8285 3.3056 33 1 5.6635 -1.2146 4.6592 34 1 4.2821 -0.7824 5.6952 35 1 5.4173 1.3284 6.3297 36 1 6.7990 0.8968 5.2939 37 1 8.5562 -0.0011 9.5650 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705257924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:23 Heat of formation + Delta-G solvation = -130.008398 kcal Electronic energy + Delta-G solvation = -17169.073551 eV Core-core repulsion = 14330.496043 eV Total energy + Delta-G solvation = -2838.577507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55407 -39.51459 -37.03580 -35.19712 -34.49018 -33.41964 -31.22118 -28.78569 -27.15712 -25.22726 -24.12511 -22.28217 -21.93525 -20.72686 -19.03706 -18.36667 -17.27902 -17.17004 -16.65931 -16.40387 -16.26253 -15.81011 -15.20552 -14.99894 -14.79685 -14.04514 -13.90067 -13.82649 -13.65186 -13.26200 -12.76667 -12.74000 -12.58815 -12.13870 -11.95566 -11.82923 -11.79565 -11.70981 -11.61247 -11.34969 -11.04829 -10.77227 -10.59478 -10.13104 -8.30475 -6.34355 1.35666 1.37667 1.49279 1.55562 2.14712 2.35304 3.00313 3.05271 3.34226 3.70409 3.84888 4.04545 4.07060 4.17312 4.22148 4.40568 4.47754 4.50897 4.66200 4.69310 4.74690 4.84807 4.86324 4.89075 5.02051 5.03693 5.23797 5.32323 5.39845 5.48337 5.53842 5.63872 5.79182 6.26216 6.52681 6.73736 7.20069 7.30641 8.85929 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049670 B = 0.003925 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.583732 B = 7131.858727 C = 7317.903524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 H 0.074 0.926 4 C 0.047 3.953 5 O -0.403 6.403 6 C 0.053 3.947 7 C -0.138 4.138 8 H 0.145 0.855 9 C 0.513 3.487 10 O -0.585 6.585 11 N -0.716 5.716 12 C 0.126 3.874 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.531 4.531 16 H 0.039 0.961 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.250 1.250 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.415 0.585 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.623 -2.653 -19.233 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 H 0.093 0.907 4 C -0.029 4.029 5 O -0.322 6.322 6 C -0.024 4.024 7 C -0.159 4.159 8 H 0.162 0.838 9 C 0.301 3.699 10 O -0.465 6.465 11 N -0.367 5.367 12 C 0.002 3.998 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.569 4.569 16 H 0.057 0.943 17 C -0.192 4.192 18 N -0.591 5.591 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.174 1.174 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.252 0.748 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.194 -1.852 -19.393 25.333 hybrid contribution 0.520 0.412 0.835 1.067 sum -15.674 -1.440 -18.558 24.333 Atomic orbital electron populations 1.21772 0.91485 1.03391 1.02676 1.22561 0.98320 1.00428 0.92664 0.90747 1.23710 0.87609 0.95346 0.96226 1.89136 1.37111 1.74262 1.31670 1.23602 0.99976 0.95414 0.83377 1.22890 0.98937 0.96444 0.97644 0.83762 1.21022 0.80208 0.88152 0.80520 1.90651 1.65250 1.19667 1.70965 1.45982 1.47044 1.15035 1.28683 1.21296 0.92849 0.93631 0.92019 1.21481 0.98898 0.98336 0.95045 1.19474 0.95325 0.95830 0.94460 1.21459 1.27097 0.97291 1.11010 0.94284 1.25971 0.95587 1.03062 0.94545 1.70055 1.33466 1.38765 1.16768 0.85710 0.77702 0.79737 0.79832 1.19155 1.20965 1.17369 0.92567 0.91239 0.90267 0.89065 0.89281 0.88973 0.87621 0.74757 0.92407 0.92916 0.91666 0.91427 0.96229 0.96297 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.97 71.98 0.65 -0.92 16 2 C -0.12 -2.14 3.30 -9.78 -0.03 -2.17 16 3 H 0.07 1.86 6.51 -2.39 -0.02 1.84 16 4 C 0.05 0.77 7.18 72.48 0.52 1.29 16 5 O -0.40 -8.94 11.65 -148.98 -1.74 -10.67 16 6 C 0.05 0.85 7.14 72.48 0.52 1.37 16 7 C -0.14 -2.41 3.16 -10.52 -0.03 -2.44 16 8 H 0.14 1.60 7.74 -2.39 -0.02 1.58 16 9 C 0.51 13.83 7.13 87.66 0.62 14.45 16 10 O -0.59 -21.20 15.29 -3.04 -0.05 -21.25 16 11 N -0.72 -18.05 5.26 -463.06 -2.43 -20.48 16 12 C 0.13 4.03 5.67 86.38 0.49 4.52 16 13 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 14 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 15 C -0.53 -30.11 9.66 25.60 0.25 -29.87 16 16 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 17 C 0.01 0.31 5.47 84.65 0.46 0.77 16 18 N -0.95 -59.34 13.96 21.45 0.30 -59.05 16 19 Si 0.95 44.56 27.46 68.60 1.88 46.45 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.25 -11.09 6.55 99.48 0.65 -10.44 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 26 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.09 0.95 7.83 -2.39 -0.02 0.93 16 28 H 0.09 1.52 7.44 -2.39 -0.02 1.51 16 29 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.42 7.73 8.26 -92.71 -0.77 6.97 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.02 0.87 7.56 -2.39 -0.02 0.86 16 36 H 0.02 0.86 7.21 -2.38 -0.02 0.85 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -73.71 303.45 1.92 -71.80 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.22 Total: 10.09 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.73 Total: -16.88 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.13 Total: -79.53 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.78 Total: -31.92 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -73.71 1.92 -71.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705257924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.212 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds