Wall clock time and date at job start Mon Mar 30 2020 04:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46825 * 2 1 4 4 C 1.50701 * 109.47018 * 119.99710 * 2 1 3 5 5 H 1.08002 * 119.99610 * 120.00634 * 4 2 1 6 6 C 1.37876 * 120.00009 * 300.27777 * 4 2 1 7 7 N 1.31508 * 120.00012 * 359.72145 * 6 4 2 8 8 Si 1.86801 * 119.99796 * 179.72743 * 6 4 2 9 9 H 1.48497 * 109.47189 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47311 * 119.99959 * 8 6 4 11 11 H 1.48502 * 109.46835 * 239.99885 * 8 6 4 12 12 N 1.46504 * 109.47439 * 240.00209 * 2 1 3 13 13 C 1.46499 * 119.99455 * 300.00068 * 12 2 1 14 14 C 1.34769 * 120.00153 * 119.99682 * 12 2 1 15 15 O 1.21283 * 120.00255 * 354.90330 * 14 12 2 16 16 C 1.50699 * 120.00036 * 174.90059 * 14 12 2 17 17 H 1.08998 * 110.45500 * 37.15203 * 16 14 12 18 18 C 1.54482 * 110.51546 * 274.55070 * 16 14 12 19 19 O 1.44425 * 104.80161 * 265.33299 * 18 16 14 20 20 C 1.44422 * 105.27442 * 319.48460 * 19 18 16 21 21 C 1.54476 * 104.80423 * 40.51599 * 20 19 18 22 22 H 1.09000 * 110.51779 * 94.66787 * 21 20 19 23 23 C 1.53006 * 110.50940 * 217.37722 * 21 20 19 24 24 H 1.08998 * 109.47468 * 60.00386 * 1 2 3 25 25 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47663 * 299.99811 * 1 2 3 27 27 H 0.97004 * 120.00009 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47182 * 95.33334 * 13 12 2 29 29 H 1.08998 * 109.46563 * 215.33816 * 13 12 2 30 30 H 1.08998 * 109.47277 * 335.33133 * 13 12 2 31 31 H 1.09002 * 110.36799 * 24.16338 * 18 16 14 32 32 H 1.08998 * 110.37588 * 146.49740 * 18 16 14 33 33 H 1.09004 * 110.36799 * 159.34331 * 20 19 18 34 34 H 1.08997 * 110.37319 * 281.68221 * 20 19 18 35 35 H 1.09002 * 109.47166 * 174.63852 * 23 21 20 36 36 H 1.08995 * 109.46735 * 294.64014 * 23 21 20 37 37 H 1.08995 * 109.47127 * 54.63810 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6944 -0.2426 2.4827 7 7 0.9384 0.8267 2.6033 8 14 2.3108 -1.1276 4.0079 9 1 3.1364 -2.2939 3.6038 10 1 3.1330 -0.1968 4.8221 11 1 1.1524 -1.5960 4.8105 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.0101 1.1491 -1.9404 16 6 3.3900 -0.7752 -3.2528 17 1 2.6879 -1.5175 -3.6325 18 6 4.7206 -1.4467 -2.8467 19 8 5.7428 -0.5001 -3.2274 20 6 5.3206 0.0222 -4.5060 21 6 3.7939 0.2134 -4.3695 22 1 3.5618 1.2371 -4.0757 23 6 3.0898 -0.1421 -5.6806 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7010 1.1560 3.4844 28 1 0.7913 -2.1448 -2.0784 29 1 2.5016 -2.6055 -1.9020 30 1 1.4371 -2.5726 -0.4759 31 1 4.7453 -1.6198 -1.7708 32 1 4.8523 -2.3848 -3.3859 33 1 5.8064 0.9775 -4.7046 34 1 5.5444 -0.6906 -5.2996 35 1 2.0102 -0.0934 -5.5381 36 1 3.3863 0.5648 -6.4555 37 1 3.3713 -1.1510 -5.9822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705259749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:35 Heat of formation + Delta-G solvation = -86.454271 kcal Electronic energy + Delta-G solvation = -18375.774560 eV Core-core repulsion = 15539.085701 eV Total energy + Delta-G solvation = -2836.688859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16819 -38.04119 -35.31387 -33.42419 -32.85548 -30.42663 -28.75868 -26.23803 -26.07403 -25.22494 -23.54297 -21.52117 -19.99956 -18.34888 -16.85072 -16.13710 -16.09391 -15.67996 -15.31346 -14.83707 -14.19069 -14.08092 -13.29366 -13.10765 -12.79608 -12.49900 -12.41736 -12.15159 -11.79825 -11.56270 -11.39834 -11.05719 -10.95304 -10.85896 -10.82241 -10.64602 -10.59986 -10.22987 -10.17761 -9.70434 -9.17810 -8.85552 -8.42600 -7.58645 -6.07554 -4.15744 3.25837 3.29481 3.34496 3.37554 3.91168 4.10278 4.39338 4.59140 4.89873 5.00595 5.10946 5.23223 5.25064 5.44595 5.46369 5.57096 5.66740 5.73708 5.77392 5.85312 5.97785 6.00863 6.06368 6.34110 6.39128 6.75815 6.83395 6.88973 7.07365 7.43606 7.54077 7.71887 8.02261 8.20008 8.53625 8.83225 9.06631 9.51010 10.97793 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033850 B = 0.006671 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.979916 B = 4196.543314 C = 4485.017216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.513 3.487 15 O -0.545 6.545 16 C -0.143 4.143 17 H 0.100 0.900 18 C 0.062 3.938 19 O -0.368 6.368 20 C 0.052 3.948 21 C -0.118 4.118 22 H 0.104 0.896 23 C -0.141 4.141 24 H 0.010 0.990 25 H 0.029 0.971 26 H 0.093 0.907 27 H 0.263 0.737 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -6.368 -13.431 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.299 3.701 15 O -0.424 6.424 16 C -0.165 4.165 17 H 0.118 0.882 18 C -0.016 4.016 19 O -0.287 6.287 20 C -0.025 4.025 21 C -0.137 4.137 22 H 0.122 0.878 23 C -0.198 4.198 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.093 -5.573 -13.057 14.530 hybrid contribution -0.037 -0.696 0.797 1.059 sum 3.056 -6.269 -12.260 14.105 Atomic orbital electron populations 1.22074 0.98222 0.99338 1.00776 1.18946 0.90919 0.94520 0.79885 0.91977 1.21363 1.31704 1.13102 0.90303 0.92187 1.24900 0.94917 0.94994 0.98999 1.69891 1.36333 1.22661 1.23662 0.86437 0.78567 0.79616 0.82756 1.19798 1.20879 1.20937 1.48217 1.48973 1.11635 1.23618 1.21606 0.98634 0.83406 1.02428 1.20054 0.79153 0.87435 0.83440 1.90623 1.60808 1.15590 1.75357 1.22807 0.98992 0.98874 0.95824 0.88153 1.23283 0.84773 0.91710 1.01793 1.89159 1.44818 1.58560 1.36129 1.23485 0.93631 0.99108 0.86294 1.22567 0.95297 1.01776 0.94101 0.87763 1.21799 1.00705 1.01184 0.96113 0.97058 0.95208 0.88859 0.92725 0.93984 0.93095 0.89823 0.88515 0.91664 0.89185 0.92483 0.92196 0.92236 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.15 0.33 -3.19 16 2 C 0.26 6.65 2.63 -69.08 -0.18 6.46 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.53 -14.25 7.96 -34.44 -0.27 -14.53 16 5 H 0.06 1.59 7.42 -52.49 -0.39 1.20 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.30 11.31 55.43 0.63 -24.67 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.59 -12.71 2.75 -175.27 -0.48 -13.19 16 13 C 0.08 1.38 8.79 59.85 0.53 1.90 16 14 C 0.51 10.78 6.75 -10.99 -0.07 10.71 16 15 O -0.55 -13.78 14.85 5.55 0.08 -13.70 16 16 C -0.14 -2.19 2.18 -90.20 -0.20 -2.39 16 17 H 0.10 1.27 6.58 -51.93 -0.34 0.93 16 18 C 0.06 0.91 6.62 37.94 0.25 1.16 16 19 O -0.37 -6.12 11.65 -35.23 -0.41 -6.53 16 20 C 0.05 0.67 7.18 37.93 0.27 0.95 16 21 C -0.12 -1.65 3.25 -89.05 -0.29 -1.94 16 22 H 0.10 1.75 6.71 -51.93 -0.35 1.40 16 23 C -0.14 -1.45 8.97 37.16 0.33 -1.12 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.68 6.30 -51.93 -0.33 0.36 16 30 H 0.08 1.47 7.10 -51.93 -0.37 1.10 16 31 H 0.10 1.58 7.86 -51.93 -0.41 1.17 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -31.89 295.72 -5.90 -37.78 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.75 Total: 0.08 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.61 Total: -0.31 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.14 Total: -37.86 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.33 Total: -20.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.89 -5.90 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705259749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.671 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds