Wall clock time and date at job start Mon Mar 30 2020 04:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46825 * 2 1 4 4 C 1.50701 * 109.47018 * 119.99710 * 2 1 3 5 5 H 1.08002 * 119.99610 * 120.00634 * 4 2 1 6 6 C 1.37876 * 120.00009 * 300.27777 * 4 2 1 7 7 N 1.31508 * 120.00012 * 359.72145 * 6 4 2 8 8 Si 1.86801 * 119.99796 * 179.72743 * 6 4 2 9 9 H 1.48497 * 109.47189 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47311 * 119.99959 * 8 6 4 11 11 H 1.48502 * 109.46835 * 239.99885 * 8 6 4 12 12 N 1.46504 * 109.47439 * 240.00209 * 2 1 3 13 13 C 1.46499 * 119.99455 * 300.00068 * 12 2 1 14 14 C 1.34769 * 120.00153 * 119.99682 * 12 2 1 15 15 O 1.21283 * 120.00255 * 354.90330 * 14 12 2 16 16 C 1.50699 * 120.00036 * 174.90059 * 14 12 2 17 17 H 1.08998 * 110.45500 * 37.15203 * 16 14 12 18 18 C 1.54482 * 110.51546 * 274.55070 * 16 14 12 19 19 O 1.44425 * 104.80161 * 265.33299 * 18 16 14 20 20 C 1.44422 * 105.27442 * 319.48460 * 19 18 16 21 21 C 1.54476 * 104.80423 * 40.51599 * 20 19 18 22 22 H 1.09000 * 110.51779 * 94.66787 * 21 20 19 23 23 C 1.53006 * 110.50940 * 217.37722 * 21 20 19 24 24 H 1.08998 * 109.47468 * 60.00386 * 1 2 3 25 25 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47663 * 299.99811 * 1 2 3 27 27 H 0.97004 * 120.00009 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47182 * 95.33334 * 13 12 2 29 29 H 1.08998 * 109.46563 * 215.33816 * 13 12 2 30 30 H 1.08998 * 109.47277 * 335.33133 * 13 12 2 31 31 H 1.09002 * 110.36799 * 24.16338 * 18 16 14 32 32 H 1.08998 * 110.37588 * 146.49740 * 18 16 14 33 33 H 1.09004 * 110.36799 * 159.34331 * 20 19 18 34 34 H 1.08997 * 110.37319 * 281.68221 * 20 19 18 35 35 H 1.09002 * 109.47166 * 174.63852 * 23 21 20 36 36 H 1.08995 * 109.46735 * 294.64014 * 23 21 20 37 37 H 1.08995 * 109.47127 * 54.63810 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6944 -0.2426 2.4827 7 7 0.9384 0.8267 2.6033 8 14 2.3108 -1.1276 4.0079 9 1 3.1364 -2.2939 3.6038 10 1 3.1330 -0.1968 4.8221 11 1 1.1524 -1.5960 4.8105 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7931 -0.0356 -2.0833 15 8 3.0101 1.1491 -1.9404 16 6 3.3900 -0.7752 -3.2528 17 1 2.6879 -1.5175 -3.6325 18 6 4.7206 -1.4467 -2.8467 19 8 5.7428 -0.5001 -3.2274 20 6 5.3206 0.0222 -4.5060 21 6 3.7939 0.2134 -4.3695 22 1 3.5618 1.2371 -4.0757 23 6 3.0898 -0.1421 -5.6806 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7010 1.1560 3.4844 28 1 0.7913 -2.1448 -2.0784 29 1 2.5016 -2.6055 -1.9020 30 1 1.4371 -2.5726 -0.4759 31 1 4.7453 -1.6198 -1.7708 32 1 4.8523 -2.3848 -3.3859 33 1 5.8064 0.9775 -4.7046 34 1 5.5444 -0.6906 -5.2996 35 1 2.0102 -0.0934 -5.5381 36 1 3.3863 0.5648 -6.4555 37 1 3.3713 -1.1510 -5.9822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705259749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:35 Heat of formation + Delta-G solvation = -108.614532 kcal Electronic energy + Delta-G solvation = -18376.735501 eV Core-core repulsion = 15539.085701 eV Total energy + Delta-G solvation = -2837.649800 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53710 -39.49908 -37.13320 -34.90520 -34.43521 -32.01154 -30.29966 -27.59291 -27.33245 -27.11336 -24.89955 -23.02216 -21.37968 -19.89601 -18.61531 -17.88524 -17.54013 -16.93322 -16.84574 -16.27381 -15.76603 -15.61262 -14.77610 -14.43213 -14.10785 -13.87625 -13.81810 -13.58183 -13.20726 -13.15640 -12.92326 -12.74419 -12.71048 -12.46089 -12.22301 -12.12640 -12.05256 -11.81157 -11.67251 -11.20443 -10.86875 -10.60344 -10.40454 -9.33738 -8.16581 -6.33570 1.39588 1.41524 1.52780 1.73197 2.29098 2.47240 3.02079 3.11447 3.44458 3.65790 3.91792 4.07364 4.20771 4.36557 4.46469 4.51501 4.63436 4.70043 4.73010 4.74798 4.76653 4.85865 4.88522 5.01702 5.04414 5.07476 5.25393 5.37195 5.45530 5.58616 5.65792 5.83688 6.03046 6.14609 6.75090 6.82516 7.30363 7.47178 8.88223 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033850 B = 0.006671 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.979916 B = 4196.543314 C = 4485.017216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.003 0.997 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.601 5.601 13 C 0.077 3.923 14 C 0.500 3.500 15 O -0.604 6.604 16 C -0.133 4.133 17 H 0.139 0.861 18 C 0.062 3.938 19 O -0.404 6.404 20 C 0.050 3.950 21 C -0.120 4.120 22 H 0.063 0.937 23 C -0.133 4.133 24 H 0.017 0.983 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.264 0.736 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -9.374 -15.138 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.021 0.979 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.331 5.331 13 C -0.065 4.065 14 C 0.289 3.711 15 O -0.486 6.486 16 C -0.154 4.154 17 H 0.156 0.844 18 C -0.015 4.015 19 O -0.323 6.323 20 C -0.026 4.026 21 C -0.139 4.139 22 H 0.081 0.919 23 C -0.190 4.190 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.481 -8.625 -14.792 17.473 hybrid contribution -0.150 0.303 1.304 1.347 sum 3.330 -8.322 -13.488 16.195 Atomic orbital electron populations 1.21853 0.97119 1.00164 0.99775 1.18525 0.91711 0.92032 0.81892 0.97939 1.21624 1.31761 1.13170 0.91067 0.91855 1.25778 0.95040 0.95674 1.02172 1.70039 1.37363 1.24037 1.24394 0.85377 0.78236 0.78495 0.78732 1.18682 1.21296 1.19824 1.48235 1.48930 1.13560 1.22334 1.21897 1.01329 0.80424 1.02822 1.21172 0.78275 0.87135 0.84563 1.90593 1.62581 1.18456 1.76977 1.22871 0.99795 0.99337 0.93438 0.84365 1.23435 0.83725 0.93135 1.01219 1.89121 1.45676 1.59467 1.38069 1.23698 0.92682 1.00265 0.85920 1.22564 0.96615 0.99239 0.95496 0.91878 1.21767 0.99957 1.03167 0.94087 0.96370 0.93229 0.91513 0.92640 0.91257 0.89337 0.90998 0.90918 0.86757 0.89229 0.88554 0.92600 0.90922 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.97 71.98 0.65 -5.80 16 2 C 0.26 13.94 2.63 44.24 0.12 14.05 16 3 H 0.00 0.17 6.91 -2.38 -0.02 0.15 16 4 C -0.54 -29.66 7.96 25.60 0.20 -29.45 16 5 H 0.06 3.36 7.42 -2.91 -0.02 3.34 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.04 11.31 21.45 0.24 -53.80 16 8 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.60 -25.76 2.75 -826.82 -2.28 -28.03 16 13 C 0.08 2.36 8.79 127.77 1.12 3.48 16 14 C 0.50 21.30 6.75 87.66 0.59 21.90 16 15 O -0.60 -32.40 14.85 -3.04 -0.05 -32.44 16 16 C -0.13 -3.79 2.18 -10.52 -0.02 -3.81 16 17 H 0.14 2.85 6.58 -2.39 -0.02 2.83 16 18 C 0.06 1.66 6.62 72.49 0.48 2.14 16 19 O -0.40 -12.87 11.65 -148.98 -1.74 -14.60 16 20 C 0.05 1.20 7.18 72.48 0.52 1.72 16 21 C -0.12 -3.14 3.25 -9.78 -0.03 -3.18 16 22 H 0.06 2.19 6.71 -2.39 -0.02 2.17 16 23 C -0.13 -2.26 8.97 71.98 0.65 -1.61 16 24 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 2.19 7.67 -2.39 -0.02 2.17 16 26 H 0.07 3.66 6.06 -2.39 -0.01 3.65 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 2.02 6.30 -2.39 -0.02 2.00 16 30 H 0.07 2.38 7.10 -2.39 -0.02 2.36 16 31 H 0.07 2.28 7.86 -2.39 -0.02 2.26 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.10 1.55 7.83 -2.39 -0.02 1.54 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 Total: -1.00 -74.74 295.72 3.98 -70.76 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.04 Total: 11.98 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 4.72 Total: 0.59 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.03 Total: -81.83 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.78 Total: -47.05 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.74 3.98 -70.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705259749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.854 kcal (2) G-P(sol) polarization free energy of solvation -74.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds