Wall clock time and date at job start Mon Mar 30 2020 04:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47543 * 2 1 4 4 N 1.46504 * 109.47336 * 119.99741 * 2 1 3 5 5 C 1.37094 * 119.99898 * 304.20096 * 4 2 1 6 6 H 1.07998 * 119.99898 * 43.06092 * 5 4 2 7 7 C 1.38951 * 119.99917 * 223.05289 * 5 4 2 8 8 N 1.31411 * 120.00172 * 14.83416 * 7 5 4 9 9 Si 1.86800 * 120.00274 * 194.82660 * 7 5 4 10 10 H 1.48504 * 109.46765 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46987 * 120.00433 * 9 7 5 12 12 H 1.48495 * 109.47600 * 240.00598 * 9 7 5 13 13 C 1.34776 * 119.99867 * 124.19752 * 4 2 1 14 14 O 1.21295 * 120.00164 * 184.73632 * 13 4 2 15 15 C 1.50698 * 120.00447 * 4.73362 * 13 4 2 16 16 H 1.09008 * 110.56412 * 29.05137 * 15 13 4 17 17 C 1.54476 * 110.51501 * 151.72600 * 15 13 4 18 18 O 1.44430 * 104.80380 * 142.62649 * 17 15 13 19 19 C 1.44431 * 105.27154 * 319.49138 * 18 17 15 20 20 C 1.54473 * 104.80256 * 40.51246 * 19 18 17 21 21 H 1.09005 * 110.51505 * 94.80701 * 20 19 18 22 22 C 1.53003 * 110.51070 * 217.37413 * 20 19 18 23 23 H 1.09009 * 109.46751 * 305.51638 * 1 2 3 24 24 H 1.08999 * 109.47402 * 65.51591 * 1 2 3 25 25 H 1.08994 * 109.47282 * 185.52217 * 1 2 3 26 26 H 1.09005 * 109.47393 * 239.99537 * 2 1 3 27 27 H 1.09004 * 109.47870 * 184.31634 * 3 2 1 28 28 H 1.09007 * 109.46949 * 304.31408 * 3 2 1 29 29 H 1.08997 * 109.47443 * 64.31424 * 3 2 1 30 30 H 0.96996 * 120.00665 * 179.97438 * 8 7 5 31 31 H 1.09000 * 110.37117 * 23.79688 * 17 15 13 32 32 H 1.08995 * 110.46935 * 261.50712 * 17 15 13 33 33 H 1.09000 * 110.37294 * 281.67584 * 19 18 17 34 34 H 1.08998 * 110.45993 * 159.38924 * 19 18 17 35 35 H 1.09001 * 109.46960 * 54.55824 * 22 20 19 36 36 H 1.09007 * 109.47047 * 294.56124 * 22 20 19 37 37 H 1.08996 * 109.47695 * 174.56630 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6176 -0.2745 2.4395 6 1 0.5835 -0.0178 2.6157 7 6 2.5420 -0.1831 3.4729 8 7 3.8288 -0.2076 3.2075 9 14 1.9556 -0.0253 5.2394 10 1 0.4709 -0.0220 5.2697 11 1 2.4640 -1.1721 6.0341 12 1 2.4656 1.2432 5.8189 13 6 2.8615 -1.7349 1.0744 14 8 3.1981 -2.3605 2.0575 15 6 3.3860 -2.1256 -0.2833 16 1 3.4401 -1.2555 -0.9377 17 6 4.7727 -2.7942 -0.1561 18 8 4.7714 -3.8392 -1.1531 19 6 3.4517 -4.4228 -1.0908 20 6 2.4970 -3.2216 -0.9124 21 1 2.1096 -2.8949 -1.8775 22 6 1.3475 -3.5855 0.0295 23 1 -0.3633 0.5971 0.8365 24 1 -0.3634 0.4259 -0.9352 25 1 -0.3633 -1.0228 0.0989 26 1 1.8933 -0.5139 -0.8900 27 1 3.1273 1.4434 -0.0773 28 1 1.6149 1.9781 -0.8489 29 1 1.7412 1.9335 0.9261 30 1 4.4742 -0.1435 3.9288 31 1 4.8989 -3.2197 0.8394 32 1 5.5638 -2.0735 -0.3629 33 1 3.3753 -5.0981 -0.2386 34 1 3.2255 -4.9531 -2.0158 35 1 1.7529 -3.9572 0.9706 36 1 0.7312 -4.3578 -0.4308 37 1 0.7396 -2.7011 0.2197 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705260200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:50 Heat of formation + Delta-G solvation = -75.321928 kcal Electronic energy + Delta-G solvation = -19180.879888 eV Core-core repulsion = 16344.673763 eV Total energy + Delta-G solvation = -2836.206124 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80811 -37.65807 -35.09367 -33.14355 -32.11132 -29.91851 -29.31670 -26.52086 -25.72318 -25.16708 -22.52124 -21.16564 -20.21863 -18.55385 -16.58556 -15.99452 -15.63913 -14.95752 -14.72070 -14.65148 -13.77188 -13.74482 -13.22769 -13.09607 -12.56045 -12.36805 -11.91422 -11.69489 -11.60436 -11.44801 -11.20988 -10.97413 -10.82787 -10.68929 -10.51501 -10.42541 -10.29614 -10.21347 -10.05939 -9.84678 -9.26376 -8.73137 -7.98397 -7.04445 -6.07238 -3.81754 3.30508 3.39645 3.41493 4.17373 4.33758 4.44045 4.90671 5.09444 5.17637 5.29512 5.45506 5.63086 5.66414 5.74807 5.87931 5.94567 5.96853 6.00002 6.07452 6.16581 6.22735 6.29546 6.41102 6.46326 6.52663 6.57041 6.60377 6.63562 6.81906 6.97795 7.12226 7.21884 7.66892 8.31841 9.12554 9.23761 9.72223 10.37106 11.02268 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.010265 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.309568 B = 2726.933773 C = 3207.033494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 C -0.148 4.148 4 N -0.450 5.450 5 C -0.336 4.336 6 H 0.077 0.923 7 C 0.067 3.933 8 N -0.836 5.836 9 Si 0.908 3.092 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.287 1.287 13 C 0.499 3.501 14 O -0.535 6.535 15 C -0.141 4.141 16 H 0.085 0.915 17 C 0.062 3.938 18 O -0.385 6.385 19 C 0.052 3.948 20 C -0.107 4.107 21 H 0.077 0.923 22 C -0.151 4.151 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -1.856 -8.573 9.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 C -0.206 4.206 4 N -0.173 5.173 5 C -0.463 4.463 6 H 0.094 0.906 7 C -0.142 4.142 8 N -0.470 5.470 9 Si 0.735 3.265 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.286 3.714 14 O -0.413 6.413 15 C -0.163 4.163 16 H 0.103 0.897 17 C -0.015 4.015 18 O -0.304 6.304 19 C -0.025 4.025 20 C -0.127 4.127 21 H 0.096 0.904 22 C -0.208 4.208 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.110 -2.223 -8.109 8.965 hybrid contribution -0.322 0.388 0.933 1.060 sum -3.432 -1.835 -7.176 8.164 Atomic orbital electron populations 1.22057 0.96521 1.01566 1.00808 1.21076 0.93756 0.93506 0.89984 1.21993 1.00700 0.96713 1.01175 1.43327 1.43876 1.25785 1.04267 1.18903 0.93700 1.47969 0.85704 0.90560 1.25203 0.94649 0.94872 0.99503 1.69836 1.00713 1.43927 1.32552 0.86221 0.78776 0.77286 0.84197 1.19696 1.20845 1.21343 1.19260 0.82938 0.81179 0.88047 1.90496 1.58879 1.52925 1.39035 1.22754 0.96259 0.98780 0.98495 0.89701 1.23353 0.95940 0.89083 0.93095 1.89016 1.31672 1.50942 1.58796 1.23453 0.82406 0.95341 1.01292 1.22369 0.96307 0.94941 0.99052 0.90416 1.21963 0.97365 1.01844 0.99640 0.92026 0.93491 0.93027 0.91640 0.93252 0.94059 0.91476 0.92830 0.90131 0.89625 0.92240 0.89821 0.91109 0.93421 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.92 37.15 0.33 -2.20 16 2 C 0.12 2.32 2.71 -67.93 -0.18 2.14 16 3 C -0.15 -2.72 9.28 37.15 0.34 -2.38 16 4 N -0.45 -10.69 2.12 -107.73 -0.23 -10.92 16 5 C -0.34 -8.85 7.95 -14.93 -0.12 -8.97 16 6 H 0.08 1.97 6.92 -52.49 -0.36 1.60 16 7 C 0.07 1.85 4.50 -17.47 -0.08 1.78 16 8 N -0.84 -24.31 11.53 55.50 0.64 -23.67 16 9 Si 0.91 21.72 29.58 -169.99 -5.03 16.69 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.50 12.10 3.82 -10.99 -0.04 12.06 16 14 O -0.54 -15.20 12.75 5.54 0.07 -15.13 16 15 C -0.14 -2.78 2.56 -90.21 -0.23 -3.01 16 16 H 0.08 1.58 6.36 -51.92 -0.33 1.25 16 17 C 0.06 1.23 7.13 37.93 0.27 1.50 16 18 O -0.39 -7.09 11.65 -35.23 -0.41 -7.50 16 19 C 0.05 0.83 7.18 37.93 0.27 1.10 16 20 C -0.11 -1.78 3.62 -89.06 -0.32 -2.10 16 21 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 22 C -0.15 -2.59 7.98 37.16 0.30 -2.30 16 23 H 0.06 1.09 7.22 -51.92 -0.37 0.71 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.86 6.69 -51.93 -0.35 0.52 16 26 H 0.07 1.15 5.42 -51.93 -0.28 0.87 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.36 7.63 -51.93 -0.40 0.97 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.80 6.89 -51.93 -0.36 1.44 16 32 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.06 0.96 7.82 -51.93 -0.41 0.56 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.42 6.98 -51.93 -0.36 1.06 16 36 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 1.28 5.52 -51.93 -0.29 0.99 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -30.99 287.35 -5.69 -36.68 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.60 Total: 1.91 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 0.54 Total: -2.39 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.41 Total: -34.59 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.34 Total: -22.63 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.99 -5.69 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705260200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.646 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds