Wall clock time and date at job start Mon Mar 30 2020 04:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47543 * 2 1 4 4 N 1.46504 * 109.47336 * 119.99741 * 2 1 3 5 5 C 1.37094 * 119.99898 * 304.20096 * 4 2 1 6 6 H 1.07998 * 119.99898 * 43.06092 * 5 4 2 7 7 C 1.38951 * 119.99917 * 223.05289 * 5 4 2 8 8 N 1.31411 * 120.00172 * 14.83416 * 7 5 4 9 9 Si 1.86800 * 120.00274 * 194.82660 * 7 5 4 10 10 H 1.48504 * 109.46765 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46987 * 120.00433 * 9 7 5 12 12 H 1.48495 * 109.47600 * 240.00598 * 9 7 5 13 13 C 1.34776 * 119.99867 * 124.19752 * 4 2 1 14 14 O 1.21295 * 120.00164 * 184.73632 * 13 4 2 15 15 C 1.50698 * 120.00447 * 4.73362 * 13 4 2 16 16 H 1.09008 * 110.56412 * 29.05137 * 15 13 4 17 17 C 1.54476 * 110.51501 * 151.72600 * 15 13 4 18 18 O 1.44430 * 104.80380 * 142.62649 * 17 15 13 19 19 C 1.44431 * 105.27154 * 319.49138 * 18 17 15 20 20 C 1.54473 * 104.80256 * 40.51246 * 19 18 17 21 21 H 1.09005 * 110.51505 * 94.80701 * 20 19 18 22 22 C 1.53003 * 110.51070 * 217.37413 * 20 19 18 23 23 H 1.09009 * 109.46751 * 305.51638 * 1 2 3 24 24 H 1.08999 * 109.47402 * 65.51591 * 1 2 3 25 25 H 1.08994 * 109.47282 * 185.52217 * 1 2 3 26 26 H 1.09005 * 109.47393 * 239.99537 * 2 1 3 27 27 H 1.09004 * 109.47870 * 184.31634 * 3 2 1 28 28 H 1.09007 * 109.46949 * 304.31408 * 3 2 1 29 29 H 1.08997 * 109.47443 * 64.31424 * 3 2 1 30 30 H 0.96996 * 120.00665 * 179.97438 * 8 7 5 31 31 H 1.09000 * 110.37117 * 23.79688 * 17 15 13 32 32 H 1.08995 * 110.46935 * 261.50712 * 17 15 13 33 33 H 1.09000 * 110.37294 * 281.67584 * 19 18 17 34 34 H 1.08998 * 110.45993 * 159.38924 * 19 18 17 35 35 H 1.09001 * 109.46960 * 54.55824 * 22 20 19 36 36 H 1.09007 * 109.47047 * 294.56124 * 22 20 19 37 37 H 1.08996 * 109.47695 * 174.56630 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6176 -0.2745 2.4395 6 1 0.5835 -0.0178 2.6157 7 6 2.5420 -0.1831 3.4729 8 7 3.8288 -0.2076 3.2075 9 14 1.9556 -0.0253 5.2394 10 1 0.4709 -0.0220 5.2697 11 1 2.4640 -1.1721 6.0341 12 1 2.4656 1.2432 5.8189 13 6 2.8615 -1.7349 1.0744 14 8 3.1981 -2.3605 2.0575 15 6 3.3860 -2.1256 -0.2833 16 1 3.4401 -1.2555 -0.9377 17 6 4.7727 -2.7942 -0.1561 18 8 4.7714 -3.8392 -1.1531 19 6 3.4517 -4.4228 -1.0908 20 6 2.4970 -3.2216 -0.9124 21 1 2.1096 -2.8949 -1.8775 22 6 1.3475 -3.5855 0.0295 23 1 -0.3633 0.5971 0.8365 24 1 -0.3634 0.4259 -0.9352 25 1 -0.3633 -1.0228 0.0989 26 1 1.8933 -0.5139 -0.8900 27 1 3.1273 1.4434 -0.0773 28 1 1.6149 1.9781 -0.8489 29 1 1.7412 1.9335 0.9261 30 1 4.4742 -0.1435 3.9288 31 1 4.8989 -3.2197 0.8394 32 1 5.5638 -2.0735 -0.3629 33 1 3.3753 -5.0981 -0.2386 34 1 3.2255 -4.9531 -2.0158 35 1 1.7529 -3.9572 0.9706 36 1 0.7312 -4.3578 -0.4308 37 1 0.7396 -2.7011 0.2197 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705260200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:50 Heat of formation + Delta-G solvation = -95.699499 kcal Electronic energy + Delta-G solvation = -19181.763525 eV Core-core repulsion = 16344.673763 eV Total energy + Delta-G solvation = -2837.089762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41111 -39.29622 -36.87493 -34.76195 -33.91648 -31.66281 -30.89266 -27.92836 -27.12569 -27.05473 -24.18093 -22.70913 -21.77668 -20.31563 -18.21131 -17.66344 -17.27079 -16.78967 -16.37609 -16.14351 -15.52880 -15.41431 -14.80757 -14.59567 -14.09889 -13.80810 -13.56407 -13.41739 -13.16049 -13.02733 -12.78679 -12.73493 -12.54957 -12.36833 -12.08587 -11.99686 -11.89583 -11.73541 -11.59239 -11.37409 -10.77126 -10.73753 -9.90675 -8.99813 -8.14447 -5.89984 1.36521 1.43128 1.50474 2.29567 2.52404 2.93486 3.24407 3.30990 3.68984 3.81840 3.92993 4.16241 4.17374 4.34474 4.43631 4.50202 4.55112 4.59521 4.71043 4.77238 4.87468 4.93411 4.95349 5.00230 5.07540 5.12265 5.14421 5.23135 5.39812 5.54876 5.58501 5.64062 5.77671 6.28451 7.12454 7.31887 7.80105 8.47790 8.94821 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.010265 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.309568 B = 2726.933773 C = 3207.033494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.114 3.886 3 C -0.141 4.141 4 N -0.462 5.462 5 C -0.336 4.336 6 H 0.079 0.921 7 C 0.015 3.985 8 N -0.873 5.873 9 Si 0.961 3.039 10 H -0.257 1.257 11 H -0.299 1.299 12 H -0.279 1.279 13 C 0.493 3.507 14 O -0.588 6.588 15 C -0.138 4.138 16 H 0.101 0.899 17 C 0.067 3.933 18 O -0.387 6.387 19 C 0.049 3.951 20 C -0.100 4.100 21 H 0.116 0.884 22 C -0.144 4.144 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.030 0.970 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.254 0.746 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.126 0.874 35 H 0.030 0.970 36 H 0.083 0.917 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 -1.785 -11.142 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 C -0.199 4.199 4 N -0.184 5.184 5 C -0.464 4.464 6 H 0.096 0.904 7 C -0.190 4.190 8 N -0.509 5.509 9 Si 0.788 3.212 10 H -0.181 1.181 11 H -0.226 1.226 12 H -0.204 1.204 13 C 0.281 3.719 14 O -0.470 6.470 15 C -0.160 4.160 16 H 0.119 0.881 17 C -0.011 4.011 18 O -0.306 6.306 19 C -0.028 4.028 20 C -0.119 4.119 21 H 0.134 0.866 22 C -0.201 4.201 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.144 0.856 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.782 -2.124 -10.706 11.916 hybrid contribution 0.129 0.327 1.663 1.699 sum -4.653 -1.797 -9.043 10.327 Atomic orbital electron populations 1.21988 0.94353 1.01525 1.02293 1.21387 0.95445 0.93499 0.88658 1.21930 0.99686 0.96612 1.01658 1.43581 1.43713 1.26053 1.05029 1.19131 0.93640 1.46450 0.87207 0.90370 1.25957 0.94812 0.95227 1.02986 1.69950 1.01640 1.46455 1.32902 0.85377 0.79047 0.76720 0.80089 1.18108 1.22588 1.20447 1.19978 0.82125 0.80550 0.89220 1.90464 1.60545 1.54643 1.41303 1.22738 0.96696 1.00479 0.96137 0.88105 1.23150 0.96536 0.89516 0.91865 1.89016 1.33298 1.50551 1.57766 1.23678 0.80979 0.95035 1.03081 1.22455 0.95518 0.93876 1.00058 0.86560 1.21870 0.97762 1.02172 0.98341 0.93574 0.89529 0.93259 0.89410 0.95080 0.89819 0.94038 0.93644 0.93713 0.88919 0.93339 0.85598 0.95093 0.89798 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.92 71.98 0.64 -3.73 16 2 C 0.11 4.09 2.71 44.99 0.12 4.21 16 3 C -0.14 -4.94 9.28 71.98 0.67 -4.27 16 4 N -0.46 -21.91 2.12 -613.14 -1.30 -23.20 16 5 C -0.34 -17.95 7.95 84.04 0.67 -17.28 16 6 H 0.08 4.04 6.92 -2.91 -0.02 4.02 16 7 C 0.02 0.86 4.50 84.93 0.38 1.24 16 8 N -0.87 -52.71 11.53 21.66 0.25 -52.46 16 9 Si 0.96 45.70 29.58 68.60 2.03 47.73 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.49 24.16 3.82 87.66 0.34 24.50 16 14 O -0.59 -34.78 12.75 -3.08 -0.04 -34.82 16 15 C -0.14 -5.30 2.56 -10.53 -0.03 -5.32 16 16 H 0.10 3.51 6.36 -2.38 -0.02 3.49 16 17 C 0.07 2.63 7.13 72.48 0.52 3.15 16 18 O -0.39 -13.55 11.65 -148.98 -1.74 -15.29 16 19 C 0.05 1.40 7.18 72.48 0.52 1.92 16 20 C -0.10 -3.01 3.62 -9.78 -0.04 -3.04 16 21 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 22 C -0.14 -4.69 7.98 71.98 0.57 -4.12 16 23 H 0.05 1.53 7.22 -2.38 -0.02 1.52 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 1.52 6.69 -2.39 -0.02 1.50 16 26 H 0.09 2.76 5.42 -2.38 -0.01 2.75 16 27 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.04 1.65 7.63 -2.39 -0.02 1.63 16 30 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.04 2.10 6.89 -2.39 -0.02 2.08 16 32 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.05 1.51 7.82 -2.39 -0.02 1.49 16 34 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.03 1.24 6.98 -2.39 -0.02 1.22 16 36 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.06 1.96 5.52 -2.39 -0.01 1.94 16 Total: -1.00 -70.39 287.35 4.62 -65.76 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.05 Total: 15.01 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 4.37 Total: -2.72 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -1.05 Total: -75.67 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -1.78 Total: -50.11 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -70.39 4.62 -65.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705260200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.936 kcal (2) G-P(sol) polarization free energy of solvation -70.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds