Wall clock time and date at job start Mon Mar 30 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47280 * 240.00089 * 2 1 3 5 5 C 1.50697 * 109.47496 * 174.99730 * 4 2 1 6 6 H 1.08007 * 119.99986 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00561 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99212 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00292 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47071 * 90.00354 * 9 7 5 11 11 H 1.48506 * 109.47156 * 330.00105 * 9 7 5 12 12 H 1.48503 * 109.47144 * 210.00045 * 9 7 5 13 13 N 1.46903 * 109.47497 * 119.99685 * 2 1 3 14 14 C 1.47849 * 110.99507 * 45.29654 * 13 2 1 15 15 C 1.54906 * 104.79422 * 213.63660 * 14 13 2 16 16 C 1.55144 * 101.65288 * 37.06672 * 15 14 13 17 17 C 1.47433 * 111.00164 * 284.45369 * 13 2 1 18 18 C 1.53004 * 109.88830 * 242.82038 * 17 13 2 19 19 C 1.50698 * 109.89138 * 3.84714 * 17 13 2 20 20 O 1.20830 * 120.00075 * 107.98001 * 19 17 13 21 21 O 1.34234 * 120.00127 * 287.97978 * 19 17 13 22 22 H 1.09004 * 109.46966 * 284.73846 * 1 2 3 23 23 H 1.09000 * 109.47683 * 44.74163 * 1 2 3 24 24 H 1.08999 * 109.47371 * 164.74594 * 1 2 3 25 25 H 1.09004 * 109.47103 * 54.99955 * 4 2 1 26 26 H 1.09003 * 109.47105 * 294.99901 * 4 2 1 27 27 H 0.96995 * 120.00551 * 359.97438 * 8 7 5 28 28 H 1.08999 * 110.37167 * 332.45841 * 14 13 2 29 29 H 1.08994 * 110.37408 * 94.80793 * 14 13 2 30 30 H 1.09003 * 110.99272 * 278.97981 * 15 14 13 31 31 H 1.08999 * 111.02879 * 155.17463 * 15 14 13 32 32 H 1.09000 * 110.70518 * 205.96245 * 16 15 14 33 33 H 1.09001 * 110.70371 * 82.73165 * 16 15 14 34 34 H 1.09007 * 109.46813 * 60.00312 * 18 17 13 35 35 H 1.09004 * 109.47262 * 180.02562 * 18 17 13 36 36 H 1.09000 * 109.47177 * 300.00347 * 18 17 13 37 37 H 0.96693 * 116.99893 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5764 -1.8377 -3.2995 9 14 6.0921 -1.0622 -2.4362 10 1 6.7000 -2.2148 -1.7241 11 1 6.5267 0.2031 -1.7915 12 1 6.5297 -1.0704 -3.8552 13 7 2.0197 -0.6924 1.1995 14 6 1.2809 -1.9536 1.4218 15 6 1.2117 -2.1052 2.9619 16 6 1.0207 -0.6333 3.4134 17 6 1.8720 0.1556 2.3964 18 6 3.2483 0.4613 2.9908 19 6 1.1745 1.4406 2.0315 20 8 0.0343 1.6303 2.3838 21 8 1.8198 2.3746 1.3152 22 1 -0.3633 0.2615 0.9939 23 1 -0.3634 0.7299 -0.7234 24 1 -0.3634 -0.9914 -0.2704 25 1 1.6054 -0.2617 -2.1370 26 1 1.7516 -1.7715 -1.2056 27 1 2.6097 -1.9062 -3.2586 28 1 0.2774 -1.8846 1.0020 29 1 1.8205 -2.7922 0.9819 30 1 2.1409 -2.5170 3.3559 31 1 0.3597 -2.7178 3.2568 32 1 1.3976 -0.4888 4.4259 33 1 -0.0277 -0.3426 3.3462 34 1 3.8550 0.9848 2.2519 35 1 3.1312 1.0878 3.8751 36 1 3.7392 -0.4713 3.2691 37 1 1.3311 3.1821 1.1052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709952042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:36 Heat of formation + Delta-G solvation = -81.640911 kcal Electronic energy + Delta-G solvation = -19076.745566 eV Core-core repulsion = 16240.265430 eV Total energy + Delta-G solvation = -2836.480136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21821 -38.30726 -36.09547 -34.57384 -32.36891 -31.30004 -28.58186 -27.04891 -25.85923 -23.58704 -22.90220 -21.80696 -19.91053 -18.90774 -17.77767 -16.84186 -16.53194 -15.84647 -14.99272 -14.66621 -14.13693 -13.63860 -13.29868 -13.09279 -12.65809 -12.53645 -12.36845 -12.08964 -11.91125 -11.64131 -11.40299 -11.28338 -11.06239 -10.82400 -10.80200 -10.63831 -10.38016 -10.29786 -10.09834 -9.98028 -9.36093 -8.44772 -8.19240 -7.73586 -6.19470 -3.84666 2.28086 3.17183 3.52446 3.56127 3.71922 4.26698 4.60788 4.66963 4.83621 5.18772 5.30908 5.39912 5.56775 5.60607 5.63652 5.69130 5.78136 5.86867 5.90102 6.04260 6.05262 6.08055 6.28157 6.34316 6.45195 6.52281 6.57985 6.63495 6.85748 7.20888 7.35552 7.57573 7.75507 8.03523 8.40167 8.69428 9.05769 9.84058 11.20751 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.008227 C = 0.008152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.222433 B = 3402.452436 C = 3433.944410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.058 3.942 3 H 0.101 0.899 4 C 0.026 3.974 5 C -0.568 4.568 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 1.070 2.930 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.470 5.470 14 C 0.033 3.967 15 C -0.126 4.126 16 C -0.132 4.132 17 C 0.105 3.895 18 C -0.127 4.127 19 C 0.488 3.512 20 O -0.524 6.524 21 O -0.500 6.500 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.265 0.735 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 4.014 12.888 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.049 4.049 3 H 0.118 0.882 4 C -0.011 4.011 5 C -0.607 4.607 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.562 5.562 9 Si 0.900 3.100 10 H -0.217 1.217 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.196 5.196 14 C -0.094 4.094 15 C -0.164 4.164 16 C -0.170 4.170 17 C 0.014 3.986 18 C -0.185 4.185 19 C 0.330 3.670 20 O -0.413 6.413 21 O -0.311 6.311 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.573 3.199 12.086 12.764 hybrid contribution -2.632 1.128 0.756 2.962 sum -5.205 4.328 12.842 14.517 Atomic orbital electron populations 1.22974 0.99455 1.01955 1.02218 1.22557 0.90191 1.00200 0.91994 0.88180 1.19195 0.97557 0.94438 0.89945 1.21962 0.91308 1.37172 1.10258 0.92648 1.25769 1.06615 0.94080 0.92984 1.70758 1.10002 1.40968 1.34488 0.83520 0.74812 0.75961 0.75712 1.21723 1.21570 1.21458 1.64044 1.53500 1.02360 0.99650 1.23253 0.97826 0.93587 0.94774 1.22706 1.02162 0.95454 0.96099 1.22920 1.00819 0.95182 0.98074 1.21993 0.96071 0.86641 0.93888 1.21772 0.94481 1.02419 0.99829 1.23957 0.84835 0.85436 0.72775 1.90630 1.19159 1.78957 1.52526 1.84746 1.49575 1.30139 1.66591 0.91917 0.92786 0.92389 0.97414 0.97449 0.92471 0.92666 0.89447 0.90495 0.90867 0.90406 0.89693 0.90586 0.93003 0.90847 0.74111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.86 7.41 37.15 0.28 -3.58 16 2 C 0.06 1.21 1.81 -67.71 -0.12 1.09 16 3 H 0.10 2.15 4.93 -51.93 -0.26 1.89 16 4 C 0.03 0.66 3.75 -27.88 -0.10 0.55 16 5 C -0.57 -16.08 8.84 -34.44 -0.30 -16.39 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 7 C 0.01 0.21 5.46 -17.82 -0.10 0.12 16 8 N -0.92 -28.67 13.65 55.43 0.76 -27.91 16 9 Si 1.07 25.96 29.90 -169.99 -5.08 20.87 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.47 -8.96 4.43 -209.22 -0.93 -9.89 16 14 C 0.03 0.56 5.74 -2.30 -0.01 0.55 16 15 C -0.13 -1.68 7.08 -24.59 -0.17 -1.85 16 16 C -0.13 -1.81 5.89 -24.91 -0.15 -1.95 16 17 C 0.10 1.69 0.89 -131.77 -0.12 1.57 16 18 C -0.13 -1.84 8.53 37.16 0.32 -1.53 16 19 C 0.49 7.94 4.26 36.00 0.15 8.10 16 20 O -0.52 -9.13 14.30 -18.75 -0.27 -9.40 16 21 O -0.50 -7.43 10.74 -39.27 -0.42 -7.85 16 22 H 0.06 1.13 4.69 -51.93 -0.24 0.89 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.06 6.58 -51.93 -0.34 0.72 16 25 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 26 H 0.01 0.20 7.44 -51.93 -0.39 -0.19 16 27 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 28 H 0.06 0.95 5.09 -51.93 -0.26 0.68 16 29 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.90 7.83 -51.93 -0.41 0.50 16 33 H 0.08 1.25 6.76 -51.93 -0.35 0.90 16 34 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 4.06 9.10 45.56 0.41 4.47 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -32.77 286.25 -6.66 -39.43 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.70 Total: 3.76 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.33 Total: -13.33 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.17 Total: -37.80 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.69 Total: -17.25 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.77 -6.66 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709952042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.210 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds