Wall clock time and date at job start Mon Mar 30 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47280 * 240.00089 * 2 1 3 5 5 C 1.50697 * 109.47496 * 174.99730 * 4 2 1 6 6 H 1.08007 * 119.99986 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00561 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99212 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00292 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47071 * 90.00354 * 9 7 5 11 11 H 1.48506 * 109.47156 * 330.00105 * 9 7 5 12 12 H 1.48503 * 109.47144 * 210.00045 * 9 7 5 13 13 N 1.46903 * 109.47497 * 119.99685 * 2 1 3 14 14 C 1.47849 * 110.99507 * 45.29654 * 13 2 1 15 15 C 1.54906 * 104.79422 * 213.63660 * 14 13 2 16 16 C 1.55144 * 101.65288 * 37.06672 * 15 14 13 17 17 C 1.47433 * 111.00164 * 284.45369 * 13 2 1 18 18 C 1.53004 * 109.88830 * 242.82038 * 17 13 2 19 19 C 1.50698 * 109.89138 * 3.84714 * 17 13 2 20 20 O 1.20830 * 120.00075 * 107.98001 * 19 17 13 21 21 O 1.34234 * 120.00127 * 287.97978 * 19 17 13 22 22 H 1.09004 * 109.46966 * 284.73846 * 1 2 3 23 23 H 1.09000 * 109.47683 * 44.74163 * 1 2 3 24 24 H 1.08999 * 109.47371 * 164.74594 * 1 2 3 25 25 H 1.09004 * 109.47103 * 54.99955 * 4 2 1 26 26 H 1.09003 * 109.47105 * 294.99901 * 4 2 1 27 27 H 0.96995 * 120.00551 * 359.97438 * 8 7 5 28 28 H 1.08999 * 110.37167 * 332.45841 * 14 13 2 29 29 H 1.08994 * 110.37408 * 94.80793 * 14 13 2 30 30 H 1.09003 * 110.99272 * 278.97981 * 15 14 13 31 31 H 1.08999 * 111.02879 * 155.17463 * 15 14 13 32 32 H 1.09000 * 110.70518 * 205.96245 * 16 15 14 33 33 H 1.09001 * 110.70371 * 82.73165 * 16 15 14 34 34 H 1.09007 * 109.46813 * 60.00312 * 18 17 13 35 35 H 1.09004 * 109.47262 * 180.02562 * 18 17 13 36 36 H 1.09000 * 109.47177 * 300.00347 * 18 17 13 37 37 H 0.96693 * 116.99893 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5764 -1.8377 -3.2995 9 14 6.0921 -1.0622 -2.4362 10 1 6.7000 -2.2148 -1.7241 11 1 6.5267 0.2031 -1.7915 12 1 6.5297 -1.0704 -3.8552 13 7 2.0197 -0.6924 1.1995 14 6 1.2809 -1.9536 1.4218 15 6 1.2117 -2.1052 2.9619 16 6 1.0207 -0.6333 3.4134 17 6 1.8720 0.1556 2.3964 18 6 3.2483 0.4613 2.9908 19 6 1.1745 1.4406 2.0315 20 8 0.0343 1.6303 2.3838 21 8 1.8198 2.3746 1.3152 22 1 -0.3633 0.2615 0.9939 23 1 -0.3634 0.7299 -0.7234 24 1 -0.3634 -0.9914 -0.2704 25 1 1.6054 -0.2617 -2.1370 26 1 1.7516 -1.7715 -1.2056 27 1 2.6097 -1.9062 -3.2586 28 1 0.2774 -1.8846 1.0020 29 1 1.8205 -2.7922 0.9819 30 1 2.1409 -2.5170 3.3559 31 1 0.3597 -2.7178 3.2568 32 1 1.3976 -0.4888 4.4259 33 1 -0.0277 -0.3426 3.3462 34 1 3.8550 0.9848 2.2519 35 1 3.1312 1.0878 3.8751 36 1 3.7392 -0.4713 3.2691 37 1 1.3311 3.1821 1.1052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709952042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:35 Heat of formation + Delta-G solvation = -104.538091 kcal Electronic energy + Delta-G solvation = -19077.738462 eV Core-core repulsion = 16240.265430 eV Total energy + Delta-G solvation = -2837.473032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.51548 -39.62437 -37.36543 -36.28823 -34.33871 -32.50036 -30.08401 -28.96881 -27.05535 -25.19925 -24.64025 -23.21955 -21.29941 -20.28475 -19.03161 -18.86621 -17.92552 -17.29187 -16.26557 -15.98798 -15.62430 -15.55381 -15.04103 -14.52348 -14.21465 -13.88716 -13.65858 -13.45104 -13.34417 -13.07784 -12.88974 -12.80672 -12.59772 -12.51271 -12.32764 -12.01838 -11.91435 -11.80785 -11.54178 -11.48807 -11.10652 -10.58930 -10.44439 -9.19917 -8.54280 -6.19789 1.00864 1.55982 1.65549 1.82865 2.02404 2.64278 2.91339 3.29581 3.42118 3.66167 3.98581 4.03852 4.16480 4.18381 4.23350 4.34812 4.45652 4.66245 4.73408 4.82893 4.87619 4.90815 4.95904 4.99261 5.00525 5.09408 5.15591 5.27549 5.39275 5.45891 5.51297 6.03610 6.10174 6.22852 6.37338 6.73637 6.89488 7.57724 8.86351 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.008227 C = 0.008152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.222433 B = 3402.452436 C = 3433.944410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.068 3.932 3 H 0.096 0.904 4 C 0.030 3.970 5 C -0.570 4.570 6 H 0.053 0.947 7 C -0.047 4.047 8 N -0.950 5.950 9 Si 1.117 2.883 10 H -0.276 1.276 11 H -0.269 1.269 12 H -0.289 1.289 13 N -0.493 5.493 14 C 0.026 3.974 15 C -0.113 4.113 16 C -0.124 4.124 17 C 0.096 3.904 18 C -0.124 4.124 19 C 0.488 3.512 20 O -0.537 6.537 21 O -0.506 6.506 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.055 0.945 25 H -0.016 1.016 26 H -0.013 1.013 27 H 0.251 0.749 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 4.527 15.056 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.040 4.040 3 H 0.114 0.886 4 C -0.007 4.007 5 C -0.608 4.608 6 H 0.071 0.929 7 C -0.243 4.243 8 N -0.590 5.590 9 Si 0.940 3.060 10 H -0.202 1.202 11 H -0.194 1.194 12 H -0.215 1.215 13 N -0.218 5.218 14 C -0.101 4.101 15 C -0.151 4.151 16 C -0.162 4.162 17 C 0.006 3.994 18 C -0.181 4.181 19 C 0.331 3.669 20 O -0.427 6.427 21 O -0.319 6.319 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.002 0.998 26 H 0.005 0.995 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -2.056 3.735 14.272 14.895 hybrid contribution -2.829 1.009 0.073 3.004 sum -4.885 4.744 14.345 15.879 Atomic orbital electron populations 1.22839 0.97803 1.01914 1.02847 1.22235 0.91410 0.99306 0.91054 0.88638 1.19068 0.96423 0.93550 0.91642 1.22242 0.92667 1.36207 1.09733 0.92898 1.27270 1.10925 0.93410 0.92664 1.70897 1.09248 1.42999 1.35833 0.82919 0.69766 0.77306 0.75996 1.20212 1.19391 1.21461 1.63873 1.54327 1.03406 1.00188 1.23274 0.96865 0.92123 0.97848 1.22685 1.03842 0.95898 0.92647 1.22915 0.99977 0.94527 0.98799 1.22187 0.97604 0.86458 0.93148 1.21766 0.93163 1.03015 1.00185 1.23987 0.84577 0.85715 0.72613 1.90624 1.19572 1.79357 1.53110 1.84687 1.50013 1.31068 1.66107 0.90835 0.92596 0.92650 0.99830 0.99501 0.94012 0.93100 0.91791 0.89406 0.88441 0.87492 0.90454 0.92732 0.90153 0.90243 0.71841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.23 7.41 71.98 0.53 -6.69 16 2 C 0.07 2.85 1.81 44.91 0.08 2.93 16 3 H 0.10 4.08 4.93 -2.39 -0.01 4.07 16 4 C 0.03 1.60 3.75 29.85 0.11 1.72 16 5 C -0.57 -32.72 8.84 25.60 0.23 -32.49 16 6 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 7 C -0.05 -2.80 5.46 84.66 0.46 -2.33 16 8 N -0.95 -60.30 13.65 21.45 0.29 -60.01 16 9 Si 1.12 51.93 29.90 68.60 2.05 53.98 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 N -0.49 -18.45 4.43 -815.83 -3.62 -22.07 16 14 C 0.03 0.88 5.74 86.77 0.50 1.38 16 15 C -0.11 -2.70 7.08 31.98 0.23 -2.47 16 16 C -0.12 -3.01 5.89 31.78 0.19 -2.82 16 17 C 0.10 2.90 0.89 3.13 0.00 2.90 16 18 C -0.12 -3.28 8.53 71.98 0.61 -2.66 16 19 C 0.49 14.99 4.26 71.24 0.30 15.29 16 20 O -0.54 -17.58 14.30 21.95 0.31 -17.27 16 21 O -0.51 -14.26 10.74 -51.45 -0.55 -14.81 16 22 H 0.07 2.58 4.69 -2.38 -0.01 2.57 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.05 2.05 6.58 -2.39 -0.02 2.03 16 25 H -0.02 -0.94 8.01 -2.38 -0.02 -0.95 16 26 H -0.01 -0.75 7.44 -2.39 -0.02 -0.77 16 27 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 28 H 0.05 1.73 5.09 -2.39 -0.01 1.72 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.11 2.00 7.83 -2.39 -0.02 1.98 16 33 H 0.08 2.04 6.76 -2.39 -0.02 2.02 16 34 H 0.05 1.67 8.00 -2.38 -0.02 1.66 16 35 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.42 7.81 9.10 -74.06 -0.67 7.13 16 Total: -1.00 -70.87 286.25 2.23 -68.64 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.50 Total: 16.80 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 3.25 Total: -25.25 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.32 Total: -82.08 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.24 Total: -32.08 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -70.87 2.23 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709952042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.897 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds