Wall clock time and date at job start Mon Mar 30 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52598 * 1 3 3 H 1.10577 * 107.56642 * 2 1 4 4 C 1.52138 * 111.93266 * 241.63091 * 2 1 3 5 5 C 1.52073 * 114.18432 * 281.15887 * 4 2 1 6 6 H 1.10797 * 107.65611 * 198.51897 * 5 4 2 7 7 C 1.52730 * 111.76072 * 81.09989 * 5 4 2 8 8 C 1.52496 * 112.20013 * 316.41953 * 5 4 2 9 9 H 1.09226 * 109.50759 * 292.02586 * 8 5 4 10 10 C 1.50816 * 109.60590 * 172.42013 * 8 5 4 11 11 O 1.20832 * 119.99599 * 259.99338 * 10 8 5 12 12 O 1.34221 * 120.00400 * 80.00321 * 10 8 5 13 13 N 1.46825 * 110.15947 * 52.08569 * 8 5 4 14 14 C 1.46903 * 111.01139 * 172.60314 * 13 8 5 15 15 C 1.50696 * 109.47179 * 56.47314 * 14 13 8 16 16 H 1.08001 * 120.00261 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00095 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47537 * 89.99875 * 19 17 15 21 21 H 1.48504 * 109.46851 * 209.99744 * 19 17 15 22 22 H 1.48502 * 109.46997 * 329.99294 * 19 17 15 23 23 C 1.46955 * 109.91364 * 295.72120 * 13 8 5 24 24 H 1.08997 * 109.46831 * 185.20421 * 1 2 3 25 25 H 1.09000 * 109.47152 * 305.20592 * 1 2 3 26 26 H 1.08998 * 109.46974 * 65.20452 * 1 2 3 27 27 H 1.09954 * 108.87934 * 159.21860 * 4 2 1 28 28 H 1.09956 * 108.88118 * 43.11493 * 4 2 1 29 29 H 1.08996 * 109.47399 * 52.82002 * 7 5 4 30 30 H 1.09001 * 109.47294 * 292.82385 * 7 5 4 31 31 H 1.08993 * 109.47417 * 172.82306 * 7 5 4 32 32 H 0.96700 * 117.00679 * 179.97438 * 12 10 8 33 33 H 1.08995 * 109.47180 * 176.47798 * 14 13 8 34 34 H 1.09007 * 109.46684 * 296.47696 * 14 13 8 35 35 H 0.96994 * 120.00173 * 180.02562 * 18 17 15 36 36 H 1.08973 * 109.44299 * 305.96549 * 23 13 8 37 37 H 1.09002 * 109.38124 * 186.01187 * 23 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5260 0.0000 0.0000 3 1 1.8597 1.0542 0.0000 4 6 2.0942 -0.6706 -1.2418 5 6 2.0779 -2.1904 -1.1918 6 1 2.7942 -2.5593 -1.9523 7 6 0.7055 -2.7541 -1.5544 8 6 2.5338 -2.7274 0.1607 9 1 3.5962 -2.5145 0.2983 10 6 2.3199 -4.2194 0.2110 11 8 1.3540 -4.6724 0.7784 12 8 3.2024 -5.0441 -0.3743 13 7 1.7708 -2.0903 1.2413 14 6 2.0685 -2.7166 2.5364 15 6 3.5517 -2.6535 2.7958 16 1 4.2075 -2.1938 2.0713 17 6 4.0714 -3.1827 3.9580 18 7 3.2727 -3.7422 4.8405 19 14 5.9098 -3.1039 4.2799 20 1 6.2326 -1.8468 5.0015 21 1 6.3179 -4.2680 5.1066 22 1 6.6403 -3.1343 2.9873 23 6 2.0593 -0.6498 1.2758 24 1 -0.3633 -1.0234 0.0932 25 1 -0.3633 0.5925 0.8397 26 1 -0.3633 0.4310 -0.9329 27 1 3.1294 -0.3299 -1.3879 28 1 1.5227 -0.3365 -2.1197 29 1 0.3833 -2.3397 -2.5096 30 1 -0.0137 -2.4853 -0.7807 31 1 0.7674 -3.8395 -1.6316 32 1 3.0230 -5.9925 -0.3153 33 1 1.5384 -2.1858 3.3271 34 1 1.7467 -3.7580 2.5188 35 1 3.6382 -4.1141 5.6583 36 1 3.1361 -0.4970 1.3430 37 1 1.5738 -0.2044 2.1442 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725637490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:02 Heat of formation + Delta-G solvation = -98.469080 kcal Electronic energy + Delta-G solvation = -19041.797014 eV Core-core repulsion = 16204.587154 eV Total energy + Delta-G solvation = -2837.209860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18325 -38.15612 -35.43162 -34.24338 -32.70622 -32.09669 -27.27265 -27.00096 -26.49113 -24.32610 -22.35484 -21.12113 -20.23715 -17.84028 -17.33150 -16.55509 -15.74462 -15.36054 -15.17639 -14.49798 -14.06788 -13.72596 -13.32661 -13.16492 -12.78050 -12.54512 -12.16613 -11.90284 -11.71146 -11.47197 -11.22707 -11.04344 -10.93996 -10.83274 -10.53854 -10.33721 -10.22951 -10.06627 -9.95405 -9.77793 -9.56258 -9.17920 -8.39773 -7.24023 -6.03610 -4.14059 3.02701 3.25549 3.32488 3.34900 3.64930 4.38309 4.85708 4.99892 5.17134 5.25704 5.26758 5.51220 5.58726 5.67338 5.82273 5.98453 6.01820 6.09847 6.16261 6.21490 6.29397 6.31523 6.37222 6.44319 6.57465 6.70768 6.73910 6.93940 7.15031 7.24510 7.58643 7.92202 7.94901 8.21936 8.25183 8.70460 8.97104 9.52742 11.01119 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.009613 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.089403 B = 2912.036597 C = 3393.856471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.057 0.943 4 C -0.097 4.097 5 C -0.074 4.074 6 H 0.064 0.936 7 C -0.145 4.145 8 C 0.110 3.890 9 H 0.075 0.925 10 C 0.494 3.506 11 O -0.495 6.495 12 O -0.526 6.526 13 N -0.510 5.510 14 C 0.169 3.831 15 C -0.558 4.558 16 H 0.056 0.944 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.068 3.932 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.400 0.600 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.039 0.961 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 4.029 -12.102 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.076 0.924 4 C -0.135 4.135 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.202 4.202 8 C -0.001 4.001 9 H 0.093 0.907 10 C 0.336 3.664 11 O -0.380 6.380 12 O -0.337 6.337 13 N -0.236 5.236 14 C 0.044 3.956 15 C -0.597 4.597 16 H 0.074 0.926 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.061 4.061 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.257 0.743 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.771 4.166 -11.885 12.895 hybrid contribution 1.988 -0.573 0.688 2.181 sum -0.783 3.592 -11.197 11.785 Atomic orbital electron populations 1.21743 0.95000 1.02957 0.99920 1.21029 0.96309 0.98267 0.94951 0.92443 1.21271 1.00694 0.93702 0.97794 1.20893 0.98024 0.95700 0.94665 0.91719 1.21877 0.97426 0.99666 1.01190 1.20931 0.99138 0.86120 0.93886 0.90723 1.23182 0.79233 0.90050 0.73959 1.90645 1.30216 1.77851 1.39303 1.84526 1.53605 1.22464 1.73150 1.62744 1.53290 1.01949 1.05568 1.20134 0.94405 0.97015 0.84058 1.21771 0.93988 1.39192 1.04783 0.92625 1.24951 0.97697 0.94877 0.96039 1.69957 1.34766 1.38047 1.09495 0.86680 0.85857 0.77692 0.78339 1.20566 1.21115 1.19872 1.21958 0.98888 0.88911 0.96293 0.90917 0.93334 0.94037 0.92636 0.92163 0.93259 0.90469 0.93657 0.74301 0.94923 0.92610 0.92782 0.94272 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.90 36.95 0.33 -1.60 16 2 C -0.09 -1.27 2.74 -91.37 -0.25 -1.52 16 3 H 0.06 0.75 8.27 -51.03 -0.42 0.33 16 4 C -0.10 -1.32 4.90 -27.64 -0.14 -1.46 16 5 C -0.07 -1.14 2.39 -91.49 -0.22 -1.36 16 6 H 0.06 0.92 8.28 -50.90 -0.42 0.49 16 7 C -0.14 -2.14 8.37 37.02 0.31 -1.83 16 8 C 0.11 2.15 1.63 -69.11 -0.11 2.03 16 9 H 0.08 1.58 6.42 -51.80 -0.33 1.25 16 10 C 0.49 10.18 5.04 36.06 0.18 10.36 16 11 O -0.49 -11.57 15.00 -18.76 -0.28 -11.85 16 12 O -0.53 -9.10 13.42 -39.23 -0.53 -9.63 16 13 N -0.51 -10.84 4.09 -229.78 -0.94 -11.78 16 14 C 0.17 4.44 4.58 -4.98 -0.02 4.41 16 15 C -0.56 -15.29 7.70 -34.44 -0.27 -15.55 16 16 H 0.06 1.49 5.74 -52.49 -0.30 1.19 16 17 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 18 N -0.88 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.07 1.27 4.50 -3.90 -0.02 1.25 16 24 H 0.07 1.14 5.49 -51.93 -0.29 0.85 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.05 0.71 8.22 -51.39 -0.42 0.29 16 28 H 0.06 0.71 7.93 -51.39 -0.41 0.30 16 29 H 0.05 0.60 8.07 -51.93 -0.42 0.19 16 30 H 0.08 1.27 5.65 -51.93 -0.29 0.97 16 31 H 0.04 0.70 6.99 -51.93 -0.36 0.34 16 32 H 0.40 5.11 9.10 45.56 0.41 5.52 16 33 H 0.03 0.92 8.02 -51.93 -0.42 0.51 16 34 H 0.06 1.64 5.61 -51.93 -0.29 1.35 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 36 H 0.04 0.78 7.02 -51.94 -0.36 0.41 16 37 H 0.07 1.40 7.99 -51.93 -0.41 0.98 16 LS Contribution 286.20 15.07 4.31 4.31 Total: -1.00 -31.38 286.20 -6.74 -38.12 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.72 Total: 3.46 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -0.30 Total: -3.44 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.20 Total: -37.42 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.81 Total: -21.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.38 -6.74 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725637490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.350 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds