Wall clock time and date at job start Mon Mar 30 2020 04:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52598 * 1 3 3 H 1.10577 * 107.56642 * 2 1 4 4 C 1.52138 * 111.93266 * 241.63091 * 2 1 3 5 5 C 1.52073 * 114.18432 * 281.15887 * 4 2 1 6 6 H 1.10797 * 107.65611 * 198.51897 * 5 4 2 7 7 C 1.52730 * 111.76072 * 81.09989 * 5 4 2 8 8 C 1.52496 * 112.20013 * 316.41953 * 5 4 2 9 9 H 1.09226 * 109.50759 * 292.02586 * 8 5 4 10 10 C 1.50816 * 109.60590 * 172.42013 * 8 5 4 11 11 O 1.20832 * 119.99599 * 259.99338 * 10 8 5 12 12 O 1.34221 * 120.00400 * 80.00321 * 10 8 5 13 13 N 1.46825 * 110.15947 * 52.08569 * 8 5 4 14 14 C 1.46903 * 111.01139 * 172.60314 * 13 8 5 15 15 C 1.50696 * 109.47179 * 56.47314 * 14 13 8 16 16 H 1.08001 * 120.00261 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00095 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47537 * 89.99875 * 19 17 15 21 21 H 1.48504 * 109.46851 * 209.99744 * 19 17 15 22 22 H 1.48502 * 109.46997 * 329.99294 * 19 17 15 23 23 C 1.46955 * 109.91364 * 295.72120 * 13 8 5 24 24 H 1.08997 * 109.46831 * 185.20421 * 1 2 3 25 25 H 1.09000 * 109.47152 * 305.20592 * 1 2 3 26 26 H 1.08998 * 109.46974 * 65.20452 * 1 2 3 27 27 H 1.09954 * 108.87934 * 159.21860 * 4 2 1 28 28 H 1.09956 * 108.88118 * 43.11493 * 4 2 1 29 29 H 1.08996 * 109.47399 * 52.82002 * 7 5 4 30 30 H 1.09001 * 109.47294 * 292.82385 * 7 5 4 31 31 H 1.08993 * 109.47417 * 172.82306 * 7 5 4 32 32 H 0.96700 * 117.00679 * 179.97438 * 12 10 8 33 33 H 1.08995 * 109.47180 * 176.47798 * 14 13 8 34 34 H 1.09007 * 109.46684 * 296.47696 * 14 13 8 35 35 H 0.96994 * 120.00173 * 180.02562 * 18 17 15 36 36 H 1.08973 * 109.44299 * 305.96549 * 23 13 8 37 37 H 1.09002 * 109.38124 * 186.01187 * 23 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5260 0.0000 0.0000 3 1 1.8597 1.0542 0.0000 4 6 2.0942 -0.6706 -1.2418 5 6 2.0779 -2.1904 -1.1918 6 1 2.7942 -2.5593 -1.9523 7 6 0.7055 -2.7541 -1.5544 8 6 2.5338 -2.7274 0.1607 9 1 3.5962 -2.5145 0.2983 10 6 2.3199 -4.2194 0.2110 11 8 1.3540 -4.6724 0.7784 12 8 3.2024 -5.0441 -0.3743 13 7 1.7708 -2.0903 1.2413 14 6 2.0685 -2.7166 2.5364 15 6 3.5517 -2.6535 2.7958 16 1 4.2075 -2.1938 2.0713 17 6 4.0714 -3.1827 3.9580 18 7 3.2727 -3.7422 4.8405 19 14 5.9098 -3.1039 4.2799 20 1 6.2326 -1.8468 5.0015 21 1 6.3179 -4.2680 5.1066 22 1 6.6403 -3.1343 2.9873 23 6 2.0593 -0.6498 1.2758 24 1 -0.3633 -1.0234 0.0932 25 1 -0.3633 0.5925 0.8397 26 1 -0.3633 0.4310 -0.9329 27 1 3.1294 -0.3299 -1.3879 28 1 1.5227 -0.3365 -2.1197 29 1 0.3833 -2.3397 -2.5096 30 1 -0.0137 -2.4853 -0.7807 31 1 0.7674 -3.8395 -1.6316 32 1 3.0230 -5.9925 -0.3153 33 1 1.5384 -2.1858 3.3271 34 1 1.7467 -3.7580 2.5188 35 1 3.6382 -4.1141 5.6583 36 1 3.1361 -0.4970 1.3430 37 1 1.5738 -0.2044 2.1442 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725637490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:01 Heat of formation + Delta-G solvation = -120.673058 kcal Electronic energy + Delta-G solvation = -19042.759850 eV Core-core repulsion = 16204.587154 eV Total energy + Delta-G solvation = -2838.172697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74618 -39.62722 -36.99757 -35.98417 -34.08288 -33.99136 -29.11235 -28.16729 -28.00234 -26.07990 -24.01227 -22.62894 -21.72965 -19.45325 -18.88789 -18.35098 -17.34910 -16.99552 -16.70292 -16.34893 -15.57497 -15.05098 -14.77358 -14.61575 -14.40793 -13.97871 -13.93489 -13.33058 -13.16560 -13.00133 -12.69732 -12.66440 -12.62863 -12.36168 -12.06754 -12.02913 -11.85635 -11.81243 -11.47004 -11.26582 -10.86686 -10.81219 -10.53446 -9.04368 -8.17235 -6.39127 1.33673 1.34215 1.41401 1.45165 2.19044 2.33846 3.07294 3.30200 3.73565 4.00353 4.03399 4.21677 4.28964 4.48104 4.52295 4.62583 4.78818 4.85464 4.91665 4.98696 5.03481 5.13090 5.19561 5.22500 5.25726 5.31458 5.35853 5.49196 5.51778 5.67011 5.80758 5.82629 5.96930 6.19094 6.44287 6.82966 7.17906 7.32976 8.84804 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.009613 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.089403 B = 2912.036597 C = 3393.856471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.097 4.097 5 C -0.071 4.071 6 H 0.086 0.914 7 C -0.140 4.140 8 C 0.106 3.894 9 H 0.060 0.940 10 C 0.492 3.508 11 O -0.532 6.532 12 O -0.517 6.517 13 N -0.509 5.509 14 C 0.185 3.815 15 C -0.560 4.560 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.066 3.934 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.419 0.581 33 H -0.001 1.001 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.025 0.975 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 5.388 -14.516 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 H 0.101 0.899 4 C -0.135 4.135 5 C -0.090 4.090 6 H 0.104 0.896 7 C -0.197 4.197 8 C -0.004 4.004 9 H 0.077 0.923 10 C 0.335 3.665 11 O -0.421 6.421 12 O -0.330 6.330 13 N -0.234 5.234 14 C 0.059 3.941 15 C -0.599 4.599 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.188 1.188 23 C -0.062 4.062 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.280 0.720 33 H 0.017 0.983 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.590 5.526 -14.334 15.444 hybrid contribution 1.597 -1.036 1.417 2.373 sum 0.006 4.490 -12.916 13.675 Atomic orbital electron populations 1.21709 0.94359 1.01791 1.01424 1.21024 0.96763 0.99195 0.93041 0.89889 1.21309 1.02123 0.91867 0.98179 1.20976 0.98713 0.97251 0.92012 0.89576 1.21837 0.96623 0.98978 1.02235 1.21136 0.97995 0.85767 0.95521 0.92273 1.23504 0.78891 0.90911 0.73206 1.90635 1.31890 1.78551 1.40992 1.84468 1.52394 1.23962 1.72211 1.62634 1.53807 1.03275 1.03714 1.19687 0.93609 0.94906 0.85947 1.22005 0.94508 1.38597 1.04816 0.92089 1.25873 1.02666 0.94496 0.95864 1.70104 1.37040 1.39221 1.10106 0.85568 0.79839 0.77894 0.78529 1.19623 1.20887 1.18761 1.22058 0.98122 0.87407 0.98583 0.93152 0.93584 0.91075 0.91343 0.88796 0.89852 0.92466 0.95007 0.72032 0.98332 0.96147 0.92694 0.95630 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.90 71.85 0.64 -2.81 16 2 C -0.08 -2.18 2.74 -11.28 -0.03 -2.21 16 3 H 0.08 1.87 8.27 -1.54 -0.01 1.85 16 4 C -0.10 -2.26 4.90 30.00 0.15 -2.12 16 5 C -0.07 -2.00 2.39 -11.36 -0.03 -2.02 16 6 H 0.09 2.12 8.28 -1.42 -0.01 2.11 16 7 C -0.14 -3.84 8.37 71.89 0.60 -3.24 16 8 C 0.11 4.12 1.63 44.05 0.07 4.19 16 9 H 0.06 2.48 6.42 -2.27 -0.01 2.46 16 10 C 0.49 20.42 5.04 71.27 0.36 20.78 16 11 O -0.53 -25.78 15.00 21.95 0.33 -25.45 16 12 O -0.52 -17.48 13.42 -51.33 -0.69 -18.16 16 13 N -0.51 -22.16 4.09 -880.88 -3.60 -25.76 16 14 C 0.19 10.21 4.58 85.56 0.39 10.60 16 15 C -0.56 -31.39 7.70 25.60 0.20 -31.20 16 16 H 0.06 3.29 5.74 -2.91 -0.02 3.27 16 17 C 0.01 0.61 5.46 84.66 0.46 1.07 16 18 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 19 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 C 0.07 2.48 4.50 86.22 0.39 2.86 16 24 H 0.05 1.52 5.49 -2.39 -0.01 1.51 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 27 H 0.07 1.45 8.22 -1.88 -0.02 1.44 16 28 H 0.09 1.65 7.93 -1.88 -0.01 1.64 16 29 H 0.08 1.71 8.07 -2.39 -0.02 1.69 16 30 H 0.06 1.82 5.65 -2.39 -0.01 1.81 16 31 H 0.03 0.94 6.99 -2.39 -0.02 0.92 16 32 H 0.42 10.37 9.10 -74.06 -0.67 9.69 16 33 H 0.00 -0.09 8.02 -2.39 -0.02 -0.11 16 34 H 0.02 1.28 5.61 -2.38 -0.01 1.26 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.03 1.01 7.02 -2.40 -0.02 0.99 16 37 H 0.06 2.26 7.99 -2.39 -0.02 2.24 16 Total: -1.00 -70.46 286.20 1.97 -68.49 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.42 Total: 15.30 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 3.20 Total: -4.09 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -3.32 Total: -82.36 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.36 Total: -43.61 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.46 1.97 -68.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725637490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.186 kcal (2) G-P(sol) polarization free energy of solvation -70.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds