Wall clock time and date at job start Mon Mar 30 2020 04:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.53643 * 2 1 4 4 C 1.53126 * 109.50167 * 239.90878 * 2 1 3 5 5 C 1.53124 * 109.15878 * 297.71050 * 4 2 1 6 6 H 1.08999 * 109.50059 * 62.28737 * 5 4 2 7 7 C 1.52998 * 109.50236 * 182.40456 * 5 4 2 8 8 C 1.53035 * 109.27794 * 302.34791 * 5 4 2 9 9 H 1.09002 * 109.45468 * 299.17034 * 8 5 4 10 10 C 1.50703 * 109.46050 * 179.19298 * 8 5 4 11 11 O 1.20819 * 120.00035 * 259.94649 * 10 8 5 12 12 O 1.34231 * 119.99418 * 79.94885 * 10 8 5 13 13 N 1.46844 * 109.52494 * 59.18054 * 8 5 4 14 14 C 1.46897 * 111.00090 * 174.16001 * 13 8 5 15 15 C 1.50699 * 109.47260 * 58.16087 * 14 13 8 16 16 H 1.08001 * 120.00323 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00251 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00179 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47231 * 60.00225 * 19 17 15 21 21 H 1.48498 * 109.47379 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47309 * 300.00222 * 19 17 15 23 23 C 1.46854 * 111.19703 * 298.25280 * 13 8 5 24 24 H 1.09001 * 109.47131 * 180.09455 * 1 2 3 25 25 H 1.09001 * 109.47190 * 300.09421 * 1 2 3 26 26 H 1.09001 * 109.47167 * 60.09190 * 1 2 3 27 27 H 1.08998 * 109.52297 * 57.61998 * 4 2 1 28 28 H 1.08999 * 109.51925 * 177.81201 * 4 2 1 29 29 H 1.09006 * 109.47097 * 60.00153 * 7 5 4 30 30 H 1.08995 * 109.46834 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.47092 * 300.00181 * 7 5 4 32 32 H 0.96706 * 116.99621 * 180.02562 * 12 10 8 33 33 H 1.08998 * 109.47712 * 178.16045 * 14 13 8 34 34 H 1.09003 * 109.47441 * 298.16361 * 14 13 8 35 35 H 0.97006 * 119.99369 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.46310 * 301.73015 * 23 13 8 37 37 H 1.09004 * 109.45830 * 181.75702 * 23 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0411 -0.7237 -1.2489 5 6 1.5749 -2.1817 -1.2110 6 1 0.4856 -2.2160 -1.2300 7 6 2.1315 -2.9277 -2.4253 8 6 2.0845 -2.8420 0.0721 9 1 3.1742 -2.8194 0.0839 10 6 1.6112 -4.2718 0.1232 11 8 0.6530 -4.5673 0.7972 12 8 2.2543 -5.2171 -0.5802 13 7 1.5675 -2.1136 1.2376 14 6 1.9223 -2.7998 2.4871 15 6 3.4206 -2.9320 2.5796 16 1 4.0468 -2.5447 1.7895 17 6 3.9921 -3.5476 3.6730 18 7 3.2297 -4.0188 4.6355 19 14 5.8494 -3.7108 3.7881 20 1 6.4670 -2.3604 3.7732 21 1 6.2081 -4.4046 5.0511 22 1 6.3499 -4.4967 2.6317 23 6 2.0410 -0.7235 1.2479 24 1 -0.3633 -1.0277 0.0017 25 1 -0.3633 0.5153 0.8891 26 1 -0.3633 0.5124 -0.8908 27 1 1.6441 -0.2373 -2.1399 28 1 3.1304 -0.6901 -1.2691 29 1 3.2208 -2.8942 -2.4043 30 1 1.7989 -3.9653 -2.3980 31 1 1.7710 -2.4549 -3.3388 32 1 1.9136 -6.1199 -0.5162 33 1 1.5555 -2.2223 3.3357 34 1 1.4687 -3.7909 2.4988 35 1 3.6319 -4.4522 5.4045 36 1 3.1308 -0.7111 1.2542 37 1 1.6669 -0.2191 2.1389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725637491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:04 Heat of formation + Delta-G solvation = -100.257122 kcal Electronic energy + Delta-G solvation = -18979.776400 eV Core-core repulsion = 16142.489005 eV Total energy + Delta-G solvation = -2837.287395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19258 -38.23352 -35.51584 -34.21166 -32.87711 -32.07795 -27.32001 -26.72425 -26.24964 -24.35623 -22.57215 -20.77437 -20.24147 -18.41280 -17.38934 -16.59746 -15.78522 -15.27985 -15.07521 -14.34138 -14.14228 -13.96123 -13.28943 -13.07555 -12.74040 -12.46585 -12.15554 -12.06645 -11.73496 -11.43246 -11.36293 -11.04023 -10.96585 -10.80870 -10.49600 -10.33215 -10.27084 -10.12997 -10.03614 -9.82678 -9.66471 -9.20699 -8.40592 -7.22508 -6.03359 -4.13988 2.99174 3.26794 3.32006 3.33679 3.62359 4.38300 4.84008 5.02417 5.16314 5.26124 5.29460 5.45249 5.65854 5.79084 5.84060 5.91903 5.97058 6.07218 6.11646 6.19838 6.22855 6.27716 6.39350 6.46862 6.57164 6.68172 6.71983 6.87752 7.12194 7.24959 7.57278 7.91657 7.94898 8.22365 8.25186 8.68003 8.96560 9.52692 11.01309 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.009633 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.958445 B = 2906.116233 C = 3316.947029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.066 0.934 4 C -0.104 4.104 5 C -0.083 4.083 6 H 0.081 0.919 7 C -0.150 4.150 8 C 0.112 3.888 9 H 0.077 0.923 10 C 0.493 3.507 11 O -0.497 6.497 12 O -0.523 6.523 13 N -0.520 5.520 14 C 0.174 3.826 15 C -0.558 4.558 16 H 0.055 0.945 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.887 3.113 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.071 3.929 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.399 0.601 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.263 0.737 36 H 0.039 0.961 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 4.149 -12.381 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.084 0.916 4 C -0.142 4.142 5 C -0.102 4.102 6 H 0.099 0.901 7 C -0.208 4.208 8 C 0.002 3.998 9 H 0.094 0.906 10 C 0.334 3.666 11 O -0.382 6.382 12 O -0.334 6.334 13 N -0.245 5.245 14 C 0.048 3.952 15 C -0.597 4.597 16 H 0.073 0.927 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.058 4.058 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.256 0.744 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.687 4.381 -12.048 13.098 hybrid contribution 1.861 -0.822 0.489 2.092 sum -0.826 3.560 -11.559 12.123 Atomic orbital electron populations 1.21740 0.94924 1.02821 0.99965 1.21272 0.96622 0.98312 0.95145 0.91552 1.21622 1.00473 0.94335 0.97761 1.21195 1.01274 0.95089 0.92688 0.90090 1.21910 1.01452 1.00585 0.96839 1.20989 0.99477 0.86180 0.93192 0.90587 1.23241 0.80191 0.88129 0.75001 1.90648 1.27392 1.82473 1.37710 1.84570 1.60099 1.21527 1.67199 1.62292 1.58023 1.01298 1.02909 1.20049 0.94041 0.95877 0.85190 1.21726 0.93231 1.39003 1.05779 0.92684 1.24952 0.97904 0.95124 0.95594 1.69954 1.35080 1.38159 1.09139 0.86733 0.85978 0.78347 0.77455 1.20187 1.21145 1.20196 1.21929 0.98031 0.89125 0.96669 0.91074 0.93241 0.94217 0.91972 0.92071 0.92396 0.91963 0.92782 0.74414 0.94896 0.92948 0.92715 0.94233 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.75 37.15 0.33 -1.63 16 2 C -0.09 -1.40 3.21 -90.54 -0.29 -1.69 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.10 -1.43 4.79 -26.60 -0.13 -1.56 16 5 C -0.08 -1.28 2.04 -90.54 -0.18 -1.46 16 6 H 0.08 1.28 6.58 -51.93 -0.34 0.94 16 7 C -0.15 -1.96 8.76 37.16 0.33 -1.64 16 8 C 0.11 2.19 1.43 -68.88 -0.10 2.09 16 9 H 0.08 1.60 6.57 -51.93 -0.34 1.26 16 10 C 0.49 10.09 6.22 36.01 0.22 10.31 16 11 O -0.50 -11.73 15.27 -18.74 -0.29 -12.02 16 12 O -0.52 -8.73 11.74 -39.26 -0.46 -9.19 16 13 N -0.52 -11.20 3.74 -229.51 -0.86 -12.06 16 14 C 0.17 4.59 4.60 -4.98 -0.02 4.57 16 15 C -0.56 -15.34 7.73 -34.44 -0.27 -15.61 16 16 H 0.06 1.48 5.84 -52.49 -0.31 1.17 16 17 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 18 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.07 1.33 4.57 -3.83 -0.02 1.31 16 24 H 0.07 1.15 6.01 -51.93 -0.31 0.84 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.83 6.22 -51.93 -0.32 0.51 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 4.90 9.10 45.56 0.41 5.32 16 33 H 0.03 0.94 8.06 -51.93 -0.42 0.52 16 34 H 0.05 1.55 5.68 -51.93 -0.30 1.25 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.04 0.80 7.03 -51.93 -0.37 0.43 16 37 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 LS Contribution 286.92 15.07 4.32 4.32 Total: -1.00 -31.63 286.92 -6.60 -38.22 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.80 Total: 3.46 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.23 Total: -3.47 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.12 Total: -37.78 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.75 Total: -21.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.63 -6.60 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725637491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.034 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds