Wall clock time and date at job start Mon Mar 30 2020 04:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.53643 * 2 1 4 4 C 1.53126 * 109.50167 * 239.90878 * 2 1 3 5 5 C 1.53124 * 109.15878 * 297.71050 * 4 2 1 6 6 H 1.08999 * 109.50059 * 62.28737 * 5 4 2 7 7 C 1.52998 * 109.50236 * 182.40456 * 5 4 2 8 8 C 1.53035 * 109.27794 * 302.34791 * 5 4 2 9 9 H 1.09002 * 109.45468 * 299.17034 * 8 5 4 10 10 C 1.50703 * 109.46050 * 179.19298 * 8 5 4 11 11 O 1.20819 * 120.00035 * 259.94649 * 10 8 5 12 12 O 1.34231 * 119.99418 * 79.94885 * 10 8 5 13 13 N 1.46844 * 109.52494 * 59.18054 * 8 5 4 14 14 C 1.46897 * 111.00090 * 174.16001 * 13 8 5 15 15 C 1.50699 * 109.47260 * 58.16087 * 14 13 8 16 16 H 1.08001 * 120.00323 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00251 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00179 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47231 * 60.00225 * 19 17 15 21 21 H 1.48498 * 109.47379 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47309 * 300.00222 * 19 17 15 23 23 C 1.46854 * 111.19703 * 298.25280 * 13 8 5 24 24 H 1.09001 * 109.47131 * 180.09455 * 1 2 3 25 25 H 1.09001 * 109.47190 * 300.09421 * 1 2 3 26 26 H 1.09001 * 109.47167 * 60.09190 * 1 2 3 27 27 H 1.08998 * 109.52297 * 57.61998 * 4 2 1 28 28 H 1.08999 * 109.51925 * 177.81201 * 4 2 1 29 29 H 1.09006 * 109.47097 * 60.00153 * 7 5 4 30 30 H 1.08995 * 109.46834 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.47092 * 300.00181 * 7 5 4 32 32 H 0.96706 * 116.99621 * 180.02562 * 12 10 8 33 33 H 1.08998 * 109.47712 * 178.16045 * 14 13 8 34 34 H 1.09003 * 109.47441 * 298.16361 * 14 13 8 35 35 H 0.97006 * 119.99369 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.46310 * 301.73015 * 23 13 8 37 37 H 1.09004 * 109.45830 * 181.75702 * 23 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0411 -0.7237 -1.2489 5 6 1.5749 -2.1817 -1.2110 6 1 0.4856 -2.2160 -1.2300 7 6 2.1315 -2.9277 -2.4253 8 6 2.0845 -2.8420 0.0721 9 1 3.1742 -2.8194 0.0839 10 6 1.6112 -4.2718 0.1232 11 8 0.6530 -4.5673 0.7972 12 8 2.2543 -5.2171 -0.5802 13 7 1.5675 -2.1136 1.2376 14 6 1.9223 -2.7998 2.4871 15 6 3.4206 -2.9320 2.5796 16 1 4.0468 -2.5447 1.7895 17 6 3.9921 -3.5476 3.6730 18 7 3.2297 -4.0188 4.6355 19 14 5.8494 -3.7108 3.7881 20 1 6.4670 -2.3604 3.7732 21 1 6.2081 -4.4046 5.0511 22 1 6.3499 -4.4967 2.6317 23 6 2.0410 -0.7235 1.2479 24 1 -0.3633 -1.0277 0.0017 25 1 -0.3633 0.5153 0.8891 26 1 -0.3633 0.5124 -0.8908 27 1 1.6441 -0.2373 -2.1399 28 1 3.1304 -0.6901 -1.2691 29 1 3.2208 -2.8942 -2.4043 30 1 1.7989 -3.9653 -2.3980 31 1 1.7710 -2.4549 -3.3388 32 1 1.9136 -6.1199 -0.5162 33 1 1.5555 -2.2223 3.3357 34 1 1.4687 -3.7909 2.4988 35 1 3.6319 -4.4522 5.4045 36 1 3.1308 -0.7111 1.2542 37 1 1.6669 -0.2191 2.1389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725637491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:04 Heat of formation + Delta-G solvation = -122.411422 kcal Electronic energy + Delta-G solvation = -18980.737082 eV Core-core repulsion = 16142.489005 eV Total energy + Delta-G solvation = -2838.248078 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75116 -39.71015 -37.07770 -35.96570 -34.21049 -34.00398 -29.13808 -28.22231 -27.40770 -26.11442 -24.24398 -22.25944 -21.76897 -19.90312 -18.92718 -18.53122 -17.43028 -16.89065 -16.76979 -15.99191 -15.67512 -15.35741 -14.67618 -14.58195 -14.40549 -13.92687 -13.57768 -13.51333 -13.37795 -12.94448 -12.85342 -12.65538 -12.50515 -12.25529 -12.14879 -12.04356 -11.85018 -11.75641 -11.63234 -11.32949 -11.06062 -10.81870 -10.56823 -9.04787 -8.17626 -6.39878 1.34008 1.34785 1.38400 1.44101 2.17238 2.33778 3.06532 3.26626 3.79113 3.97233 4.01577 4.20751 4.35098 4.49957 4.53698 4.66443 4.79826 4.83258 4.90204 4.98425 5.01253 5.14781 5.17214 5.23027 5.26903 5.31099 5.35901 5.47603 5.48992 5.66029 5.71434 5.79828 5.96223 6.17444 6.45099 6.81274 7.16556 7.32183 8.84332 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.009633 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.958445 B = 2906.116233 C = 3316.947029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 H 0.093 0.907 4 C -0.100 4.100 5 C -0.077 4.077 6 H 0.077 0.923 7 C -0.145 4.145 8 C 0.109 3.891 9 H 0.062 0.938 10 C 0.491 3.509 11 O -0.538 6.538 12 O -0.510 6.510 13 N -0.523 5.523 14 C 0.190 3.810 15 C -0.561 4.561 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.069 3.931 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.418 0.582 33 H -0.002 1.002 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.025 0.975 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 5.310 -14.944 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.111 0.889 4 C -0.138 4.138 5 C -0.096 4.096 6 H 0.095 0.905 7 C -0.202 4.202 8 C -0.001 4.001 9 H 0.079 0.921 10 C 0.334 3.666 11 O -0.427 6.427 12 O -0.323 6.323 13 N -0.248 5.248 14 C 0.063 3.937 15 C -0.600 4.600 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.059 4.059 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.279 0.721 33 H 0.017 0.983 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.441 5.542 -14.652 15.731 hybrid contribution 1.432 -1.217 1.271 2.268 sum -0.009 4.325 -13.381 14.062 Atomic orbital electron populations 1.21690 0.94438 1.01602 1.01299 1.21274 0.96931 0.99145 0.93292 0.88852 1.21658 1.00835 0.92892 0.98385 1.21235 1.01024 0.96322 0.91045 0.90485 1.21881 1.01483 1.00112 0.96771 1.21193 0.98483 0.86168 0.94280 0.92076 1.23549 0.79611 0.89091 0.74312 1.90636 1.29345 1.83186 1.39529 1.84516 1.59257 1.22536 1.65981 1.62173 1.58467 1.02419 1.01709 1.19599 0.93447 0.93929 0.86709 1.21960 0.93707 1.38501 1.05838 0.92081 1.25888 1.03098 0.94743 0.95195 1.70106 1.37347 1.39200 1.09873 0.85606 0.79683 0.78821 0.77639 1.18976 1.20848 1.19234 1.22030 0.97152 0.87869 0.98865 0.93534 0.93730 0.91096 0.88355 0.91699 0.92233 0.92718 0.89731 0.72115 0.98344 0.96540 0.92651 0.95696 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.75 71.98 0.63 -2.87 16 2 C -0.09 -2.37 3.21 -10.74 -0.03 -2.41 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.10 -2.38 4.79 30.68 0.15 -2.23 16 5 C -0.08 -2.20 2.04 -10.74 -0.02 -2.22 16 6 H 0.08 2.29 6.58 -2.39 -0.02 2.27 16 7 C -0.14 -3.32 8.76 71.98 0.63 -2.69 16 8 C 0.11 4.24 1.43 44.19 0.06 4.31 16 9 H 0.06 2.57 6.57 -2.39 -0.02 2.55 16 10 C 0.49 20.35 6.22 71.24 0.44 20.79 16 11 O -0.54 -26.37 15.27 21.99 0.34 -26.04 16 12 O -0.51 -16.67 11.74 -51.42 -0.60 -17.27 16 13 N -0.52 -23.16 3.74 -880.05 -3.29 -26.44 16 14 C 0.19 10.57 4.60 85.56 0.39 10.96 16 15 C -0.56 -31.59 7.73 25.60 0.20 -31.39 16 16 H 0.06 3.30 5.84 -2.91 -0.02 3.28 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 19 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 C 0.07 2.60 4.57 86.32 0.39 2.99 16 24 H 0.05 1.46 6.01 -2.39 -0.01 1.44 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.05 1.33 6.22 -2.39 -0.01 1.32 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.42 9.94 9.10 -74.05 -0.67 9.26 16 33 H 0.00 -0.10 8.06 -2.39 -0.02 -0.12 16 34 H 0.02 1.04 5.68 -2.39 -0.01 1.03 16 35 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 36 H 0.02 1.00 7.03 -2.39 -0.02 0.99 16 37 H 0.06 2.28 8.06 -2.39 -0.02 2.26 16 Total: -1.00 -71.21 286.92 2.45 -68.76 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.39 Total: 15.24 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 3.31 Total: -3.71 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.00 Total: -83.23 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.27 Total: -43.31 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.21 2.45 -68.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725637491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.651 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds