Wall clock time and date at job start Mon Mar 30 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.53354 * 2 1 4 4 C 1.53121 * 109.50516 * 239.90178 * 2 1 3 5 5 C 1.53116 * 109.15919 * 182.40790 * 4 2 1 6 6 H 1.09002 * 109.50351 * 297.71191 * 5 4 2 7 7 C 1.52999 * 109.53493 * 177.61327 * 5 4 2 8 8 C 1.53033 * 109.28227 * 57.65414 * 5 4 2 9 9 H 1.08999 * 109.46224 * 60.82054 * 8 5 4 10 10 C 1.50693 * 109.46607 * 180.80389 * 8 5 4 11 11 O 1.20827 * 120.00050 * 99.99666 * 10 8 5 12 12 O 1.34233 * 120.00216 * 280.00138 * 10 8 5 13 13 N 1.46851 * 109.52136 * 300.81976 * 8 5 4 14 14 C 1.46907 * 110.99868 * 185.83649 * 13 8 5 15 15 C 1.50697 * 109.46705 * 170.00181 * 14 13 8 16 16 H 1.07995 * 120.00536 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99827 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00171 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47368 * 59.99783 * 19 17 15 21 21 H 1.48498 * 109.47272 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47177 * 299.99925 * 19 17 15 23 23 C 1.46852 * 111.19904 * 61.74235 * 13 8 5 24 24 H 1.08998 * 109.47559 * 299.90425 * 1 2 3 25 25 H 1.09008 * 109.46984 * 59.89975 * 1 2 3 26 26 H 1.08994 * 109.47059 * 179.90016 * 1 2 3 27 27 H 1.08997 * 109.52457 * 62.49916 * 4 2 1 28 28 H 1.09000 * 109.52188 * 302.31192 * 4 2 1 29 29 H 1.09001 * 109.47299 * 300.09775 * 7 5 4 30 30 H 1.08999 * 109.46968 * 60.09743 * 7 5 4 31 31 H 1.09000 * 109.47656 * 180.09582 * 7 5 4 32 32 H 0.96697 * 117.00386 * 179.97438 * 12 10 8 33 33 H 1.08999 * 109.47304 * 289.99688 * 14 13 8 34 34 H 1.08999 * 109.46587 * 50.00035 * 14 13 8 35 35 H 0.96996 * 120.00074 * 180.02562 * 18 17 15 36 36 H 1.08996 * 109.46331 * 58.27233 * 23 13 8 37 37 H 1.08998 * 109.46031 * 178.24995 * 23 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2487 5 6 3.5712 -0.7720 -1.2106 6 1 3.9678 0.2432 -1.2297 7 6 4.0891 -1.5456 -2.4248 8 6 4.0229 -1.4730 0.0725 9 1 3.6372 -2.4924 0.0845 10 6 5.5286 -1.5052 0.1237 11 8 6.1275 -0.7003 0.7971 12 8 6.2046 -2.4280 -0.5787 13 7 3.5092 -0.7421 1.2380 14 6 4.0371 -1.3059 2.4876 15 6 3.6926 -0.3925 3.6357 16 1 3.1375 0.5160 3.4551 17 6 4.0871 -0.7164 4.9165 18 7 4.7636 -1.8226 5.1364 19 14 3.6608 0.4161 6.3396 20 1 2.1852 0.5491 6.4415 21 1 4.1943 -0.1539 7.6028 22 1 4.2633 1.7531 6.1059 23 6 2.0408 -0.7234 1.2481 24 1 -0.3634 0.5123 0.8908 25 1 -0.3633 0.5154 -0.8892 26 1 -0.3633 -1.0276 -0.0018 27 1 1.7158 -0.1871 -2.1398 28 1 1.6453 -1.7391 -1.2690 29 1 3.6922 -2.5606 -2.4053 30 1 3.7659 -1.0466 -3.3384 31 1 5.1781 -1.5807 -2.3958 32 1 7.1693 -2.4088 -0.5146 33 1 3.5949 -2.2873 2.6588 34 1 5.1202 -1.4034 2.4131 35 1 5.0408 -2.0506 6.0375 36 1 1.6646 -1.7464 1.2545 37 1 1.6904 -0.2021 2.1389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725637492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:07 Heat of formation + Delta-G solvation = -100.626089 kcal Electronic energy + Delta-G solvation = -18556.724545 eV Core-core repulsion = 15719.421151 eV Total energy + Delta-G solvation = -2837.303395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26768 -38.22931 -35.67473 -34.16368 -33.30257 -32.14497 -27.65907 -26.92344 -26.22640 -24.13447 -22.26342 -20.63344 -20.18046 -19.25458 -17.56846 -16.41535 -16.18536 -15.40181 -14.87308 -14.51838 -14.22868 -13.75768 -13.74041 -13.08866 -12.56756 -12.43562 -12.32903 -12.07851 -11.88618 -11.80747 -11.68492 -11.10674 -10.94333 -10.77266 -10.61510 -10.53853 -10.40758 -10.21569 -10.00398 -9.88312 -9.38711 -9.12176 -8.35487 -7.31623 -5.97108 -3.97009 2.78968 3.36986 3.40266 3.40855 3.44567 4.44214 4.71825 4.88592 5.09664 5.15414 5.29809 5.39441 5.52990 5.65869 5.71205 5.79757 5.82542 5.86209 5.96864 6.04671 6.08636 6.10526 6.28702 6.29863 6.41684 6.47672 6.72113 6.76636 6.94402 7.28810 7.30342 7.80394 8.10813 8.16291 8.43060 8.59161 9.07993 9.65275 11.14449 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.008838 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.108309 B = 3167.296062 C = 4204.318385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.078 0.922 4 C -0.103 4.103 5 C -0.080 4.080 6 H 0.082 0.918 7 C -0.149 4.149 8 C 0.103 3.897 9 H 0.060 0.940 10 C 0.477 3.523 11 O -0.477 6.477 12 O -0.526 6.526 13 N -0.519 5.519 14 C 0.182 3.818 15 C -0.500 4.500 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.074 3.926 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.401 0.599 33 H -0.013 1.013 34 H 0.048 0.952 35 H 0.261 0.739 36 H 0.023 0.977 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -0.358 -14.106 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.141 4.141 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.207 4.207 8 C -0.007 4.007 9 H 0.078 0.922 10 C 0.317 3.683 11 O -0.360 6.360 12 O -0.338 6.338 13 N -0.245 5.245 14 C 0.057 3.943 15 C -0.539 4.539 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.054 4.054 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.259 0.741 33 H 0.005 0.995 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.197 0.243 -13.801 14.427 hybrid contribution 0.310 -0.366 1.080 1.182 sum -3.887 -0.124 -12.721 13.302 Atomic orbital electron populations 1.21759 0.95391 1.01482 1.01417 1.21290 0.94761 1.00675 0.94835 0.90390 1.21658 0.93841 1.00616 0.97987 1.21120 0.96448 1.00178 0.92127 0.89981 1.21908 1.01770 1.00149 0.96885 1.21166 0.86831 0.97983 0.94767 0.92247 1.23342 0.91527 0.77714 0.75734 1.90762 1.70149 1.38347 1.36781 1.84561 1.25962 1.55857 1.67387 1.61936 1.07221 1.53234 1.02151 1.19989 0.96769 0.93212 0.84285 1.21021 1.35020 1.07034 0.90785 0.91884 1.24975 0.95346 0.95437 0.98912 1.69950 1.38610 1.24010 1.21395 0.86546 0.78539 0.80974 0.81249 1.20309 1.21395 1.20160 1.22038 0.87254 0.98193 0.97929 0.92469 0.93049 0.92996 0.91800 0.92140 0.92457 0.92573 0.91908 0.74084 0.99534 0.93446 0.92957 0.95929 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.20 37.16 0.34 -1.40 16 2 C -0.10 -1.44 2.88 -90.54 -0.26 -1.70 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C -0.10 -1.35 4.57 -26.61 -0.12 -1.47 16 5 C -0.08 -1.17 2.39 -90.54 -0.22 -1.39 16 6 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 7 C -0.15 -1.79 8.77 37.16 0.33 -1.47 16 8 C 0.10 1.91 1.88 -68.88 -0.13 1.78 16 9 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 10 C 0.48 9.24 6.07 36.00 0.22 9.45 16 11 O -0.48 -11.26 15.39 -18.75 -0.29 -11.55 16 12 O -0.53 -7.80 11.74 -39.27 -0.46 -8.26 16 13 N -0.52 -11.51 4.25 -229.51 -0.97 -12.48 16 14 C 0.18 4.94 4.31 -4.97 -0.02 4.92 16 15 C -0.50 -14.53 8.43 -34.44 -0.29 -14.82 16 16 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 19 Si 0.90 22.30 29.54 -169.99 -5.02 17.27 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.07 1.41 4.58 -3.83 -0.02 1.39 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.78 6.21 -51.93 -0.32 0.45 16 32 H 0.40 4.27 9.10 45.56 0.41 4.68 16 33 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 34 H 0.05 1.42 5.42 -51.93 -0.28 1.14 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 1.90 6.70 -51.93 -0.35 1.55 16 LS Contribution 294.60 15.07 4.44 4.44 Total: -1.00 -33.44 294.60 -6.96 -40.40 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.12 Total: 0.28 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.27 Total: -3.20 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.24 Total: -39.38 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.75 Total: -19.81 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.44 -6.96 -40.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725637492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.226 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds