Wall clock time and date at job start Mon Mar 30 2020 04:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.53354 * 2 1 4 4 C 1.53121 * 109.50516 * 239.90178 * 2 1 3 5 5 C 1.53116 * 109.15919 * 182.40790 * 4 2 1 6 6 H 1.09002 * 109.50351 * 297.71191 * 5 4 2 7 7 C 1.52999 * 109.53493 * 177.61327 * 5 4 2 8 8 C 1.53033 * 109.28227 * 57.65414 * 5 4 2 9 9 H 1.08999 * 109.46224 * 60.82054 * 8 5 4 10 10 C 1.50693 * 109.46607 * 180.80389 * 8 5 4 11 11 O 1.20827 * 120.00050 * 99.99666 * 10 8 5 12 12 O 1.34233 * 120.00216 * 280.00138 * 10 8 5 13 13 N 1.46851 * 109.52136 * 300.81976 * 8 5 4 14 14 C 1.46907 * 110.99868 * 185.83649 * 13 8 5 15 15 C 1.50697 * 109.46705 * 170.00181 * 14 13 8 16 16 H 1.07995 * 120.00536 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99827 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00171 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47368 * 59.99783 * 19 17 15 21 21 H 1.48498 * 109.47272 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47177 * 299.99925 * 19 17 15 23 23 C 1.46852 * 111.19904 * 61.74235 * 13 8 5 24 24 H 1.08998 * 109.47559 * 299.90425 * 1 2 3 25 25 H 1.09008 * 109.46984 * 59.89975 * 1 2 3 26 26 H 1.08994 * 109.47059 * 179.90016 * 1 2 3 27 27 H 1.08997 * 109.52457 * 62.49916 * 4 2 1 28 28 H 1.09000 * 109.52188 * 302.31192 * 4 2 1 29 29 H 1.09001 * 109.47299 * 300.09775 * 7 5 4 30 30 H 1.08999 * 109.46968 * 60.09743 * 7 5 4 31 31 H 1.09000 * 109.47656 * 180.09582 * 7 5 4 32 32 H 0.96697 * 117.00386 * 179.97438 * 12 10 8 33 33 H 1.08999 * 109.47304 * 289.99688 * 14 13 8 34 34 H 1.08999 * 109.46587 * 50.00035 * 14 13 8 35 35 H 0.96996 * 120.00074 * 180.02562 * 18 17 15 36 36 H 1.08996 * 109.46331 * 58.27233 * 23 13 8 37 37 H 1.08998 * 109.46031 * 178.24995 * 23 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2487 5 6 3.5712 -0.7720 -1.2106 6 1 3.9678 0.2432 -1.2297 7 6 4.0891 -1.5456 -2.4248 8 6 4.0229 -1.4730 0.0725 9 1 3.6372 -2.4924 0.0845 10 6 5.5286 -1.5052 0.1237 11 8 6.1275 -0.7003 0.7971 12 8 6.2046 -2.4280 -0.5787 13 7 3.5092 -0.7421 1.2380 14 6 4.0371 -1.3059 2.4876 15 6 3.6926 -0.3925 3.6357 16 1 3.1375 0.5160 3.4551 17 6 4.0871 -0.7164 4.9165 18 7 4.7636 -1.8226 5.1364 19 14 3.6608 0.4161 6.3396 20 1 2.1852 0.5491 6.4415 21 1 4.1943 -0.1539 7.6028 22 1 4.2633 1.7531 6.1059 23 6 2.0408 -0.7234 1.2481 24 1 -0.3634 0.5123 0.8908 25 1 -0.3633 0.5154 -0.8892 26 1 -0.3633 -1.0276 -0.0018 27 1 1.7158 -0.1871 -2.1398 28 1 1.6453 -1.7391 -1.2690 29 1 3.6922 -2.5606 -2.4053 30 1 3.7659 -1.0466 -3.3384 31 1 5.1781 -1.5807 -2.3958 32 1 7.1693 -2.4088 -0.5146 33 1 3.5949 -2.2873 2.6588 34 1 5.1202 -1.4034 2.4131 35 1 5.0408 -2.0506 6.0375 36 1 1.6646 -1.7464 1.2545 37 1 1.6904 -0.2021 2.1389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725637492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:06 Heat of formation + Delta-G solvation = -124.811063 kcal Electronic energy + Delta-G solvation = -18557.773285 eV Core-core repulsion = 15719.421151 eV Total energy + Delta-G solvation = -2838.352134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77751 -39.65373 -37.15511 -35.90932 -34.51492 -34.17347 -29.49656 -28.28834 -27.41127 -25.94479 -23.85696 -22.22191 -21.48851 -20.61013 -19.05734 -18.53664 -17.73241 -16.94652 -16.62368 -16.21548 -15.56542 -15.32063 -15.06864 -14.65181 -14.09291 -13.80276 -13.75388 -13.48512 -13.45399 -13.04182 -12.90026 -12.78318 -12.64703 -12.35491 -12.27248 -12.06044 -11.79824 -11.75615 -11.50922 -11.38199 -11.00893 -10.94069 -10.57694 -9.11348 -8.22571 -6.31512 1.24733 1.36770 1.41815 1.49210 2.02392 2.38003 3.09275 3.13838 3.70202 3.88838 3.95776 4.07936 4.19052 4.44103 4.47970 4.63106 4.70650 4.76087 4.84828 4.86595 4.91912 5.06329 5.08386 5.12741 5.22487 5.25914 5.34215 5.41922 5.48349 5.58786 5.60842 5.65049 6.01896 6.27653 6.49841 6.81896 7.08034 7.36319 8.89291 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.008838 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.108309 B = 3167.296062 C = 4204.318385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.098 4.098 5 C -0.074 4.074 6 H 0.069 0.931 7 C -0.143 4.143 8 C 0.095 3.905 9 H 0.063 0.937 10 C 0.481 3.519 11 O -0.529 6.529 12 O -0.506 6.506 13 N -0.532 5.532 14 C 0.199 3.801 15 C -0.519 4.519 16 H 0.062 0.938 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.272 1.272 23 C 0.073 3.927 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.422 0.578 33 H -0.043 1.043 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.020 0.980 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 0.168 -15.877 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.135 4.135 5 C -0.093 4.093 6 H 0.088 0.912 7 C -0.200 4.200 8 C -0.015 4.015 9 H 0.081 0.919 10 C 0.323 3.677 11 O -0.417 6.417 12 O -0.320 6.320 13 N -0.258 5.258 14 C 0.073 3.927 15 C -0.557 4.557 16 H 0.080 0.920 17 C -0.200 4.200 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.055 4.055 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.283 0.717 33 H -0.026 1.026 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.632 0.749 -15.619 16.620 hybrid contribution 0.812 -0.603 1.569 1.867 sum -4.820 0.146 -14.050 14.854 Atomic orbital electron populations 1.21718 0.92951 1.02272 1.02482 1.21246 0.96665 0.99582 0.93396 0.91344 1.21679 0.92199 1.01490 0.98118 1.21168 0.97878 0.99351 0.90888 0.91215 1.21868 1.01291 1.00456 0.96390 1.21438 0.86512 0.98362 0.95188 0.91901 1.23569 0.92088 0.77243 0.74795 1.90741 1.71165 1.40668 1.39156 1.84501 1.27743 1.53882 1.65846 1.61812 1.09061 1.53560 1.01325 1.19560 0.94721 0.91712 0.86712 1.21358 1.35101 1.07269 0.91957 0.91996 1.25963 0.94996 0.97068 1.01975 1.70089 1.39603 1.25858 1.22195 0.85403 0.79061 0.78557 0.77399 1.18651 1.20618 1.19712 1.22101 0.85456 0.98377 0.99519 0.93129 0.90297 0.92348 0.88331 0.91056 0.91632 0.89768 0.92616 0.71707 1.02583 0.96634 0.92744 0.96142 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.20 71.98 0.66 -2.31 16 2 C -0.09 -2.52 2.88 -10.74 -0.03 -2.55 16 3 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 4 C -0.10 -2.23 4.57 30.67 0.14 -2.09 16 5 C -0.07 -2.02 2.39 -10.74 -0.03 -2.05 16 6 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 7 C -0.14 -2.95 8.77 71.98 0.63 -2.32 16 8 C 0.09 3.54 1.88 44.19 0.08 3.62 16 9 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 10 C 0.48 18.94 6.07 71.23 0.43 19.37 16 11 O -0.53 -26.03 15.39 21.96 0.34 -25.69 16 12 O -0.51 -14.65 11.74 -51.45 -0.60 -15.26 16 13 N -0.53 -24.33 4.25 -880.05 -3.74 -28.07 16 14 C 0.20 11.38 4.31 85.55 0.37 11.75 16 15 C -0.52 -31.27 8.43 25.60 0.22 -31.06 16 16 H 0.06 3.65 7.12 -2.91 -0.02 3.63 16 17 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 18 N -0.94 -59.31 13.29 21.45 0.28 -59.02 16 19 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 C 0.07 2.83 4.58 86.32 0.40 3.23 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.23 6.21 -2.39 -0.01 1.22 16 32 H 0.42 8.58 9.10 -74.06 -0.67 7.90 16 33 H -0.04 -2.66 8.12 -2.39 -0.02 -2.68 16 34 H 0.02 0.99 5.42 -2.39 -0.01 0.98 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 2.77 6.70 -2.39 -0.02 2.75 16 Total: -1.00 -75.91 294.60 2.02 -73.88 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.38 Total: 9.81 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 3.33 Total: -4.10 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -3.45 Total: -87.09 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.27 Total: -40.95 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -75.91 2.02 -73.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725637492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.927 kcal (2) G-P(sol) polarization free energy of solvation -75.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds