Wall clock time and date at job start Mon Mar 30 2020 04:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47230 * 2 1 4 4 C 1.50700 * 109.47128 * 120.00591 * 2 1 3 5 5 H 1.07998 * 120.00868 * 119.99484 * 4 2 1 6 6 C 1.37883 * 119.99663 * 299.99287 * 4 2 1 7 7 N 1.31519 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00033 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47325 * 89.99992 * 8 6 4 10 10 H 1.48502 * 109.46904 * 210.00070 * 8 6 4 11 11 H 1.48497 * 109.47057 * 329.99963 * 8 6 4 12 12 C 1.50703 * 109.46892 * 239.99652 * 2 1 3 13 13 O 1.21280 * 120.00325 * 262.19239 * 12 2 1 14 14 N 1.34775 * 119.99726 * 82.18245 * 12 2 1 15 15 C 1.48181 * 118.51359 * 355.40084 * 14 12 2 16 16 C 1.54291 * 110.69413 * 221.20292 * 15 14 12 17 17 O 1.40527 * 109.86721 * 39.38410 * 16 15 14 18 18 C 1.42554 * 113.54272 * 264.70923 * 17 16 15 19 19 C 1.47690 * 113.66367 * 87.75769 * 18 17 16 20 20 H 1.09002 * 109.39959 * 59.24235 * 19 18 17 21 21 C 1.53002 * 109.43560 * 179.13589 * 19 18 17 22 22 C 1.44460 * 118.51487 * 175.37918 * 14 12 2 23 23 H 1.09001 * 109.46804 * 307.30315 * 1 2 3 24 24 H 1.08999 * 109.47263 * 67.30200 * 1 2 3 25 25 H 1.08998 * 109.46871 * 187.30902 * 1 2 3 26 26 H 0.96997 * 120.00004 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.23131 * 341.51175 * 15 14 12 28 28 H 1.08997 * 109.23353 * 100.89436 * 15 14 12 29 29 H 1.09004 * 109.40607 * 159.50906 * 16 15 14 30 30 H 1.08998 * 109.40523 * 279.26445 * 16 15 14 31 31 H 1.09000 * 108.64977 * 326.67597 * 18 17 16 32 32 H 1.09003 * 108.54085 * 208.76467 * 18 17 16 33 33 H 1.09006 * 109.47218 * 180.21401 * 21 19 18 34 34 H 1.09006 * 109.47258 * 300.20928 * 21 19 18 35 35 H 1.08993 * 109.47451 * 60.21409 * 21 19 18 36 36 H 1.09002 * 109.49571 * 211.05066 * 22 14 12 37 37 H 1.09004 * 109.49469 * 331.12884 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1314 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6306 -0.5443 4.4118 10 1 1.3445 -0.9490 5.1122 11 1 2.4879 -2.5655 3.7121 12 6 2.0323 -0.7105 -1.2305 13 8 2.3690 -1.8738 -1.1641 14 7 2.1072 -0.0532 -2.4047 15 6 1.5912 1.3341 -2.4729 16 6 0.8171 1.5639 -3.7877 17 8 0.0551 0.4248 -4.0986 18 6 0.7071 -0.4681 -4.9985 19 6 1.5702 -1.4609 -4.3272 20 1 0.9699 -2.0560 -3.6390 21 6 2.2017 -2.3785 -5.3762 22 6 2.6874 -0.7330 -3.5397 23 1 -0.3633 0.6228 0.8175 24 1 -0.3634 0.3965 -0.9481 25 1 -0.3633 -1.0193 0.1307 26 1 0.7084 1.1608 3.4844 27 1 0.9251 1.5114 -1.6285 28 1 2.4275 2.0312 -2.4223 29 1 0.1551 2.4222 -3.6730 30 1 1.5235 1.7583 -4.5946 31 1 1.3178 0.1155 -5.6873 32 1 -0.0532 -0.9985 -5.5721 33 1 2.8359 -3.1139 -4.8810 34 1 1.4158 -2.8912 -5.9308 35 1 2.8033 -1.7842 -6.0638 36 1 3.1755 -0.0058 -4.1887 37 1 3.4207 -1.4606 -3.1920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831149560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:14 Heat of formation + Delta-G solvation = -83.397695 kcal Electronic energy + Delta-G solvation = -18629.832001 eV Core-core repulsion = 15793.275685 eV Total energy + Delta-G solvation = -2836.556316 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01451 -38.02927 -35.04199 -34.26143 -33.54081 -30.42548 -29.10438 -26.27664 -26.05179 -25.11829 -22.68816 -21.61988 -20.54244 -18.36320 -16.94830 -16.46766 -16.10683 -15.53250 -15.15768 -14.66032 -14.26390 -14.10032 -13.70894 -13.10705 -12.88648 -12.60917 -12.32964 -12.03060 -11.87376 -11.51022 -11.36820 -11.02978 -10.94102 -10.78083 -10.63422 -10.53416 -10.39103 -10.17884 -9.95908 -9.50140 -8.92051 -8.51496 -8.25015 -7.98935 -5.99776 -4.01978 3.35354 3.41038 3.48209 3.60696 3.78432 4.00096 4.49729 4.79890 4.93008 5.10482 5.20372 5.25954 5.33733 5.35158 5.46397 5.60211 5.62923 5.75603 5.77739 5.95135 6.02851 6.08370 6.18332 6.36478 6.41359 6.75741 6.93791 7.06197 7.26639 7.39455 7.52975 7.81634 8.00058 8.11427 8.42533 9.03961 9.29173 9.62555 11.08343 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036826 B = 0.006975 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.141960 B = 4013.556014 C = 4468.833780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.046 0.954 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.546 6.546 14 N -0.620 5.620 15 C 0.077 3.923 16 C 0.050 3.950 17 O -0.364 6.364 18 C 0.072 3.928 19 C -0.145 4.145 20 H 0.084 0.916 21 C -0.138 4.138 22 C 0.124 3.876 23 H 0.088 0.912 24 H 0.018 0.982 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 2.385 -15.243 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.539 4.539 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.422 6.422 14 N -0.355 5.355 15 C -0.046 4.046 16 C -0.028 4.028 17 O -0.281 6.281 18 C -0.005 4.005 19 C -0.165 4.165 20 H 0.103 0.897 21 C -0.196 4.196 22 C -0.001 4.001 23 H 0.106 0.894 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.315 1.842 -14.994 15.110 hybrid contribution 0.576 -0.282 0.701 0.950 sum 0.891 1.560 -14.293 14.406 Atomic orbital electron populations 1.21727 0.96096 1.01195 0.99626 1.18876 0.94316 0.96493 0.89356 0.93649 1.21109 1.31097 1.12467 0.89181 0.91268 1.24934 0.95109 0.95072 0.99015 1.69889 1.37065 1.23124 1.23467 0.86476 0.78404 0.80311 0.82180 1.20718 1.21241 1.19764 1.22040 0.75323 0.86979 0.84407 1.90511 1.48750 1.17434 1.85490 1.47915 1.62705 1.14520 1.10388 1.22838 0.98464 0.83011 1.00303 1.22909 0.94908 0.89059 0.95941 1.87501 1.41656 1.32744 1.66245 1.21568 0.96262 0.91968 0.90712 1.21568 0.98368 0.97985 0.98617 0.89718 1.21651 1.00674 0.99228 0.98067 1.21267 0.94888 0.96100 0.87806 0.89384 0.96326 0.94665 0.93005 0.87741 0.91763 0.88882 0.93177 0.93671 0.90281 0.91911 0.92569 0.92827 0.92109 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.41 37.16 0.31 -2.83 16 2 C 0.03 0.79 1.77 -92.92 -0.16 0.62 16 3 H 0.05 1.17 7.01 -51.93 -0.36 0.81 16 4 C -0.50 -14.54 8.33 -34.44 -0.29 -14.83 16 5 H 0.07 2.12 6.97 -52.49 -0.37 1.75 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -25.48 11.41 55.43 0.63 -24.85 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.52 12.47 6.74 -10.98 -0.07 12.40 16 13 O -0.55 -14.71 15.18 5.56 0.08 -14.62 16 14 N -0.62 -11.68 2.55 -171.94 -0.44 -12.12 16 15 C 0.08 1.21 5.90 -2.44 -0.01 1.19 16 16 C 0.05 0.63 6.49 37.83 0.25 0.88 16 17 O -0.36 -5.50 10.23 -34.10 -0.35 -5.85 16 18 C 0.07 0.90 5.26 34.59 0.18 1.09 16 19 C -0.15 -2.06 2.88 -92.20 -0.27 -2.33 16 20 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 21 C -0.14 -1.51 9.15 37.16 0.34 -1.17 16 22 C 0.12 1.96 4.70 -4.15 -0.02 1.94 16 23 H 0.09 2.29 6.30 -51.93 -0.33 1.96 16 24 H 0.02 0.39 6.57 -51.93 -0.34 0.05 16 25 H 0.03 0.89 8.13 -51.93 -0.42 0.47 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.10 1.83 4.43 -51.93 -0.23 1.60 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.52 7.21 -51.93 -0.37 0.15 16 31 H 0.05 0.47 7.28 -51.93 -0.38 0.09 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 1.44 7.29 -51.93 -0.38 1.07 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -32.34 289.75 -6.26 -38.60 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.70 Total: -1.18 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 0.16 Total: -1.45 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.19 Total: -36.97 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.26 Total: -20.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.34 -6.26 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831149560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.800 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds