Wall clock time and date at job start Mon Mar 30 2020 04:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47230 * 2 1 4 4 C 1.50700 * 109.47128 * 120.00591 * 2 1 3 5 5 H 1.07998 * 120.00868 * 119.99484 * 4 2 1 6 6 C 1.37883 * 119.99663 * 299.99287 * 4 2 1 7 7 N 1.31519 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00033 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47325 * 89.99992 * 8 6 4 10 10 H 1.48502 * 109.46904 * 210.00070 * 8 6 4 11 11 H 1.48497 * 109.47057 * 329.99963 * 8 6 4 12 12 C 1.50703 * 109.46892 * 239.99652 * 2 1 3 13 13 O 1.21280 * 120.00325 * 262.19239 * 12 2 1 14 14 N 1.34775 * 119.99726 * 82.18245 * 12 2 1 15 15 C 1.48181 * 118.51359 * 355.40084 * 14 12 2 16 16 C 1.54291 * 110.69413 * 221.20292 * 15 14 12 17 17 O 1.40527 * 109.86721 * 39.38410 * 16 15 14 18 18 C 1.42554 * 113.54272 * 264.70923 * 17 16 15 19 19 C 1.47690 * 113.66367 * 87.75769 * 18 17 16 20 20 H 1.09002 * 109.39959 * 59.24235 * 19 18 17 21 21 C 1.53002 * 109.43560 * 179.13589 * 19 18 17 22 22 C 1.44460 * 118.51487 * 175.37918 * 14 12 2 23 23 H 1.09001 * 109.46804 * 307.30315 * 1 2 3 24 24 H 1.08999 * 109.47263 * 67.30200 * 1 2 3 25 25 H 1.08998 * 109.46871 * 187.30902 * 1 2 3 26 26 H 0.96997 * 120.00004 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.23131 * 341.51175 * 15 14 12 28 28 H 1.08997 * 109.23353 * 100.89436 * 15 14 12 29 29 H 1.09004 * 109.40607 * 159.50906 * 16 15 14 30 30 H 1.08998 * 109.40523 * 279.26445 * 16 15 14 31 31 H 1.09000 * 108.64977 * 326.67597 * 18 17 16 32 32 H 1.09003 * 108.54085 * 208.76467 * 18 17 16 33 33 H 1.09006 * 109.47218 * 180.21401 * 21 19 18 34 34 H 1.09006 * 109.47258 * 300.20928 * 21 19 18 35 35 H 1.08993 * 109.47451 * 60.21409 * 21 19 18 36 36 H 1.09002 * 109.49571 * 211.05066 * 22 14 12 37 37 H 1.09004 * 109.49469 * 331.12884 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1314 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6306 -0.5443 4.4118 10 1 1.3445 -0.9490 5.1122 11 1 2.4879 -2.5655 3.7121 12 6 2.0323 -0.7105 -1.2305 13 8 2.3690 -1.8738 -1.1641 14 7 2.1072 -0.0532 -2.4047 15 6 1.5912 1.3341 -2.4729 16 6 0.8171 1.5639 -3.7877 17 8 0.0551 0.4248 -4.0986 18 6 0.7071 -0.4681 -4.9985 19 6 1.5702 -1.4609 -4.3272 20 1 0.9699 -2.0560 -3.6390 21 6 2.2017 -2.3785 -5.3762 22 6 2.6874 -0.7330 -3.5397 23 1 -0.3633 0.6228 0.8175 24 1 -0.3634 0.3965 -0.9481 25 1 -0.3633 -1.0193 0.1307 26 1 0.7084 1.1608 3.4844 27 1 0.9251 1.5114 -1.6285 28 1 2.4275 2.0312 -2.4223 29 1 0.1551 2.4222 -3.6730 30 1 1.5235 1.7583 -4.5946 31 1 1.3178 0.1155 -5.6873 32 1 -0.0532 -0.9985 -5.5721 33 1 2.8359 -3.1139 -4.8810 34 1 1.4158 -2.8912 -5.9308 35 1 2.8033 -1.7842 -6.0638 36 1 3.1755 -0.0058 -4.1887 37 1 3.4207 -1.4606 -3.1920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831149560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:13 Heat of formation + Delta-G solvation = -105.235681 kcal Electronic energy + Delta-G solvation = -18630.778967 eV Core-core repulsion = 15793.275685 eV Total energy + Delta-G solvation = -2837.503282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43379 -39.50874 -36.33677 -35.96645 -35.29749 -32.47423 -30.27818 -27.63936 -27.25753 -27.08494 -24.29386 -23.10193 -21.74098 -19.96557 -18.47742 -18.19977 -17.57291 -16.99272 -16.74865 -16.26804 -15.90013 -15.33408 -14.98410 -14.76241 -14.41591 -14.29012 -13.77143 -13.27966 -13.06620 -12.95952 -12.83498 -12.76100 -12.63978 -12.53091 -12.25853 -12.17108 -12.06390 -11.70612 -11.51411 -11.07536 -10.64976 -10.59346 -10.19450 -9.48273 -8.17642 -6.27779 1.38062 1.39324 1.51304 1.89336 2.19097 2.44575 3.02290 3.11939 3.72750 3.80500 3.95292 4.09882 4.23803 4.30334 4.40773 4.47820 4.63082 4.67677 4.68712 4.73894 4.79453 4.89369 4.92545 4.95137 5.04892 5.12203 5.24379 5.30567 5.43364 5.68684 5.80968 5.93037 6.14681 6.42046 6.53569 6.78229 7.37157 7.50645 8.89023 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036826 B = 0.006975 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.141960 B = 4013.556014 C = 4468.833780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.030 3.970 3 H 0.042 0.958 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.515 3.485 13 O -0.590 6.590 14 N -0.610 5.610 15 C 0.066 3.934 16 C 0.054 3.946 17 O -0.392 6.392 18 C 0.067 3.933 19 C -0.139 4.139 20 H 0.036 0.964 21 C -0.131 4.131 22 C 0.116 3.884 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.012 0.988 26 H 0.266 0.734 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 3.735 -17.146 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.009 3.991 3 H 0.060 0.940 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.306 3.694 13 O -0.471 6.471 14 N -0.343 5.343 15 C -0.056 4.056 16 C -0.024 4.024 17 O -0.310 6.310 18 C -0.010 4.010 19 C -0.159 4.159 20 H 0.054 0.946 21 C -0.189 4.189 22 C -0.007 4.007 23 H 0.091 0.909 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.528 3.242 -16.940 17.255 hybrid contribution 0.515 -0.656 1.256 1.507 sum 1.042 2.586 -15.684 15.930 Atomic orbital electron populations 1.21504 0.95492 0.99453 1.00374 1.18769 0.94769 0.95947 0.89628 0.94010 1.21245 1.32034 1.12453 0.91378 0.93987 1.25599 0.95084 0.95732 1.01364 1.69954 1.36942 1.23508 1.24416 0.85590 0.78618 0.78619 0.79035 1.19501 1.19739 1.20707 1.21704 0.75490 0.86473 0.85723 1.90477 1.51031 1.19115 1.86435 1.47882 1.61335 1.15536 1.09565 1.23150 0.99379 0.81307 1.01766 1.23047 0.95587 0.88970 0.94798 1.87489 1.42865 1.33746 1.66905 1.21722 0.96820 0.91834 0.90579 1.21506 0.97575 0.98352 0.98457 0.94583 1.21613 1.01102 0.98750 0.97458 1.21551 0.95181 0.96660 0.87297 0.90904 0.93687 0.96877 0.92464 0.90165 0.89407 0.86650 0.89762 0.90107 0.88986 0.93326 0.91085 0.89921 0.87907 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 8.41 71.98 0.61 -4.94 16 2 C 0.03 1.60 1.77 -12.28 -0.02 1.57 16 3 H 0.04 2.22 7.01 -2.39 -0.02 2.20 16 4 C -0.53 -32.15 8.33 25.60 0.21 -31.94 16 5 H 0.04 2.71 6.97 -2.91 -0.02 2.69 16 6 C 0.02 1.25 5.30 84.66 0.45 1.69 16 7 N -0.91 -52.04 11.41 21.45 0.24 -51.79 16 8 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 12 C 0.52 25.52 6.74 87.66 0.59 26.11 16 13 O -0.59 -33.54 15.18 -3.03 -0.05 -33.59 16 14 N -0.61 -22.73 2.55 -816.28 -2.08 -24.81 16 15 C 0.07 1.94 5.90 86.49 0.51 2.45 16 16 C 0.05 1.15 6.49 72.42 0.47 1.62 16 17 O -0.39 -10.77 10.23 -144.92 -1.48 -12.25 16 18 C 0.07 1.46 5.26 70.32 0.37 1.83 16 19 C -0.14 -3.76 2.88 -11.82 -0.03 -3.79 16 20 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 21 C -0.13 -2.58 9.15 71.98 0.66 -1.92 16 22 C 0.12 3.54 4.70 87.40 0.41 3.95 16 23 H 0.07 3.86 6.30 -2.39 -0.02 3.85 16 24 H 0.04 1.96 6.57 -2.39 -0.02 1.95 16 25 H 0.01 0.65 8.13 -2.39 -0.02 0.64 16 26 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.08 2.76 4.43 -2.39 -0.01 2.75 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 1.27 7.21 -2.39 -0.02 1.25 16 31 H 0.08 1.23 7.28 -2.39 -0.02 1.21 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 37 H 0.06 2.03 7.29 -2.38 -0.02 2.01 16 Total: -1.00 -73.39 289.75 3.93 -69.46 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.05 Total: 8.41 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 4.22 Total: -3.36 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.84 Total: -76.60 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -1.53 Total: -45.84 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -73.39 3.93 -69.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831149560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.772 kcal (2) G-P(sol) polarization free energy of solvation -73.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds