Wall clock time and date at job start Mon Mar 30 2020 04:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.21282 * 119.99524 * 120.00349 * 12 2 1 14 14 N 1.34773 * 119.99914 * 300.00351 * 12 2 1 15 15 C 1.48173 * 118.51561 * 359.97438 * 14 12 2 16 16 C 1.54301 * 110.69608 * 221.22599 * 15 14 12 17 17 O 1.40521 * 109.86271 * 39.38459 * 16 15 14 18 18 C 1.42567 * 113.54578 * 264.70661 * 17 16 15 19 19 C 1.47693 * 113.65548 * 87.76369 * 18 17 16 20 20 H 1.08996 * 109.43468 * 59.26316 * 19 18 17 21 21 C 1.52997 * 109.43208 * 179.13322 * 19 18 17 22 22 C 1.44460 * 118.50663 * 179.73539 * 14 12 2 23 23 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.23597 * 341.53965 * 15 14 12 28 28 H 1.09007 * 109.23374 * 100.91117 * 15 14 12 29 29 H 1.09001 * 109.40321 * 159.50828 * 16 15 14 30 30 H 1.09003 * 109.40130 * 279.34361 * 16 15 14 31 31 H 1.08995 * 108.64853 * 208.84199 * 18 17 16 32 32 H 1.09002 * 108.64364 * 326.82503 * 18 17 16 33 33 H 1.09010 * 109.47316 * 60.00217 * 21 19 18 34 34 H 1.09004 * 109.47095 * 179.97438 * 21 19 18 35 35 H 1.09000 * 109.47584 * 300.00116 * 21 19 18 36 36 H 1.09008 * 109.49203 * 211.02169 * 22 14 12 37 37 H 1.09001 * 109.50042 * 331.09991 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 0.8535 0.9577 2.5522 16 6 1.3575 1.8925 3.6715 17 8 2.7624 1.9194 3.6746 18 6 3.3476 1.0045 4.5983 19 6 3.5630 -0.3454 4.0393 20 1 4.2195 -0.2782 3.1718 21 6 4.2114 -1.2378 5.0995 22 6 2.2009 -0.9590 3.6120 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.9028 -0.5285 -4.4375 27 1 0.8759 1.4910 1.6018 28 1 -0.1713 0.6566 2.7700 29 1 0.9762 2.8994 3.5014 30 1 1.0012 1.5283 4.6352 31 1 4.3079 1.4043 4.9238 32 1 2.6939 0.9199 5.4664 33 1 3.5566 -1.3043 5.9685 34 1 4.3703 -2.2345 4.6877 35 1 5.1688 -0.8107 5.3979 36 1 1.4859 -0.8643 4.4294 37 1 2.3333 -2.0122 3.3644 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831149562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:17 Heat of formation + Delta-G solvation = -67.507350 kcal Electronic energy + Delta-G solvation = -18698.845595 eV Core-core repulsion = 15862.978336 eV Total energy + Delta-G solvation = -2835.867259 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17421 -38.19407 -35.12116 -34.57366 -33.54659 -31.15840 -29.24603 -26.42941 -26.16305 -25.14735 -22.99698 -21.72262 -20.54253 -18.54905 -16.99451 -16.83424 -16.28189 -15.75426 -15.35709 -14.68337 -14.38085 -14.25304 -13.87644 -13.35683 -13.23778 -12.67121 -12.55715 -12.17524 -12.03118 -11.87214 -11.59132 -11.41554 -11.22370 -10.91173 -10.72340 -10.57460 -10.48134 -10.24634 -9.63694 -9.52442 -9.04435 -8.59977 -8.52992 -8.13079 -6.01046 -4.00558 3.25498 3.33322 3.38876 3.45833 3.60947 3.89319 4.41501 4.71746 4.82605 4.98736 5.06720 5.17942 5.27400 5.28850 5.34726 5.50136 5.54929 5.62654 5.67824 5.73756 5.89381 5.94237 6.08516 6.14628 6.17746 6.33683 6.37247 6.48275 6.71856 7.14757 7.21861 7.29524 7.58206 7.98435 8.58783 9.12297 9.19220 9.58322 11.12105 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.007799 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.786802 B = 3589.396985 C = 4037.527105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.004 4.004 3 H 0.052 0.948 4 C -0.503 4.503 5 H 0.092 0.908 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.279 1.279 10 H -0.267 1.267 11 H -0.296 1.296 12 C 0.528 3.472 13 O -0.529 6.529 14 N -0.620 5.620 15 C 0.078 3.922 16 C 0.047 3.953 17 O -0.364 6.364 18 C 0.071 3.929 19 C -0.146 4.146 20 H 0.086 0.914 21 C -0.139 4.139 22 C 0.123 3.877 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 5.764 18.350 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.542 4.542 5 H 0.110 0.890 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.223 1.223 12 C 0.319 3.681 13 O -0.404 6.404 14 N -0.355 5.355 15 C -0.045 4.045 16 C -0.031 4.031 17 O -0.282 6.282 18 C -0.005 4.005 19 C -0.166 4.166 20 H 0.104 0.896 21 C -0.197 4.197 22 C -0.001 4.001 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.528 5.337 17.973 18.918 hybrid contribution -0.851 0.681 -0.084 1.094 sum -3.380 6.018 17.888 19.174 Atomic orbital electron populations 1.22409 0.97534 1.01707 0.99728 1.19283 0.93115 0.97497 0.92700 0.93012 1.20955 1.31906 1.14021 0.87274 0.88960 1.24986 0.95876 0.96562 0.95758 1.69888 1.45607 1.40231 0.97830 0.86913 0.80650 0.83905 0.77094 1.20562 1.19222 1.22310 1.21332 0.78659 0.84063 0.84072 1.90563 1.37171 1.26530 1.86102 1.47862 1.52897 1.28545 1.06242 1.22987 0.93379 0.86522 1.01660 1.22958 0.82378 0.99990 0.97765 1.87504 1.18834 1.58960 1.62896 1.21582 0.98619 0.89889 0.90433 1.21665 0.99041 0.95626 1.00281 0.89612 1.21654 1.00119 1.00047 0.97842 1.21403 0.93176 0.97616 0.87887 0.92504 0.93804 0.93376 0.92627 0.88235 0.91361 0.88886 0.92989 0.90113 0.93614 0.92818 0.91801 0.92484 0.91941 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 8.19 37.16 0.30 -2.97 16 2 C 0.00 -0.11 1.40 -92.92 -0.13 -0.24 16 3 H 0.05 1.25 6.45 -51.93 -0.34 0.91 16 4 C -0.50 -14.96 8.96 -34.44 -0.31 -15.27 16 5 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 8 Si 0.88 21.71 24.37 -169.99 -4.14 17.56 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.20 16 10 H -0.27 -6.09 6.53 56.52 0.37 -5.72 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 12 C 0.53 12.11 7.02 -10.98 -0.08 12.03 16 13 O -0.53 -14.05 14.85 5.56 0.08 -13.97 16 14 N -0.62 -10.88 2.54 -171.60 -0.44 -11.32 16 15 C 0.08 1.09 4.85 -2.44 -0.01 1.08 16 16 C 0.05 0.55 6.50 37.84 0.25 0.79 16 17 O -0.36 -5.21 10.23 -34.09 -0.35 -5.56 16 18 C 0.07 0.85 5.26 34.59 0.18 1.03 16 19 C -0.15 -1.97 2.89 -91.92 -0.27 -2.24 16 20 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 21 C -0.14 -1.45 9.15 37.16 0.34 -1.11 16 22 C 0.12 1.83 4.78 -3.87 -0.02 1.81 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.73 4.58 -51.93 -0.24 0.49 16 25 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.10 1.55 4.99 -51.93 -0.26 1.29 16 28 H 0.07 0.81 7.52 -51.92 -0.39 0.42 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.48 7.20 -51.93 -0.37 0.11 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.44 7.27 -51.93 -0.38 0.07 16 33 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.74 8.10 -51.92 -0.42 0.32 16 37 H 0.09 1.43 7.23 -51.93 -0.38 1.06 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -34.50 279.81 -5.14 -39.64 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.45 Total: 0.02 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 0.16 Total: -3.12 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.34 Total: -38.79 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.27 Total: -19.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.50 -5.14 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831149562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.868 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds