Wall clock time and date at job start Mon Mar 30 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.21282 * 119.99524 * 120.00349 * 12 2 1 14 14 N 1.34773 * 119.99914 * 300.00351 * 12 2 1 15 15 C 1.48173 * 118.51561 * 359.97438 * 14 12 2 16 16 C 1.54301 * 110.69608 * 221.22599 * 15 14 12 17 17 O 1.40521 * 109.86271 * 39.38459 * 16 15 14 18 18 C 1.42567 * 113.54578 * 264.70661 * 17 16 15 19 19 C 1.47693 * 113.65548 * 87.76369 * 18 17 16 20 20 H 1.08996 * 109.43468 * 59.26316 * 19 18 17 21 21 C 1.52997 * 109.43208 * 179.13322 * 19 18 17 22 22 C 1.44460 * 118.50663 * 179.73539 * 14 12 2 23 23 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.23597 * 341.53965 * 15 14 12 28 28 H 1.09007 * 109.23374 * 100.91117 * 15 14 12 29 29 H 1.09001 * 109.40321 * 159.50828 * 16 15 14 30 30 H 1.09003 * 109.40130 * 279.34361 * 16 15 14 31 31 H 1.08995 * 108.64853 * 208.84199 * 18 17 16 32 32 H 1.09002 * 108.64364 * 326.82503 * 18 17 16 33 33 H 1.09010 * 109.47316 * 60.00217 * 21 19 18 34 34 H 1.09004 * 109.47095 * 179.97438 * 21 19 18 35 35 H 1.09000 * 109.47584 * 300.00116 * 21 19 18 36 36 H 1.09008 * 109.49203 * 211.02169 * 22 14 12 37 37 H 1.09001 * 109.50042 * 331.09991 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 0.8535 0.9577 2.5522 16 6 1.3575 1.8925 3.6715 17 8 2.7624 1.9194 3.6746 18 6 3.3476 1.0045 4.5983 19 6 3.5630 -0.3454 4.0393 20 1 4.2195 -0.2782 3.1718 21 6 4.2114 -1.2378 5.0995 22 6 2.2009 -0.9590 3.6120 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.9028 -0.5285 -4.4375 27 1 0.8759 1.4910 1.6018 28 1 -0.1713 0.6566 2.7700 29 1 0.9762 2.8994 3.5014 30 1 1.0012 1.5283 4.6352 31 1 4.3079 1.4043 4.9238 32 1 2.6939 0.9199 5.4664 33 1 3.5566 -1.3043 5.9685 34 1 4.3703 -2.2345 4.6877 35 1 5.1688 -0.8107 5.3979 36 1 1.4859 -0.8643 4.4294 37 1 2.3333 -2.0122 3.3644 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831149562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:16 Heat of formation + Delta-G solvation = -94.182681 kcal Electronic energy + Delta-G solvation = -18700.002324 eV Core-core repulsion = 15862.978336 eV Total energy + Delta-G solvation = -2837.023988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52479 -39.56182 -36.33957 -36.20015 -35.24648 -33.20180 -30.31630 -27.78834 -27.19725 -27.00497 -24.56492 -23.02610 -21.70055 -20.06887 -18.90064 -18.18999 -17.60964 -17.08026 -16.84071 -16.42519 -15.83802 -15.50883 -14.98166 -14.91485 -14.69208 -14.36927 -14.02198 -13.51748 -13.33999 -13.04079 -12.89691 -12.83463 -12.63368 -12.40462 -12.24480 -12.12057 -11.69971 -11.54264 -11.44153 -11.23250 -10.79565 -10.66119 -10.28936 -9.51811 -8.29236 -6.37139 1.30088 1.38288 1.49364 1.82301 2.14790 2.32989 3.02086 3.03974 3.69880 3.75408 3.89221 4.03152 4.22366 4.25437 4.38364 4.39879 4.45045 4.58175 4.60394 4.66378 4.70585 4.78555 4.80481 4.86750 4.92387 4.96403 5.12646 5.24037 5.29252 5.44227 5.50649 5.82017 6.20121 6.42362 6.48603 6.77766 7.24089 7.45424 8.88839 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.007799 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.786802 B = 3589.396985 C = 4037.527105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 H 0.060 0.940 4 C -0.524 4.524 5 H 0.025 0.975 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.961 3.039 9 H -0.256 1.256 10 H -0.232 1.232 11 H -0.297 1.297 12 C 0.519 3.481 13 O -0.587 6.587 14 N -0.607 5.607 15 C 0.061 3.939 16 C 0.047 3.953 17 O -0.395 6.395 18 C 0.068 3.932 19 C -0.141 4.141 20 H 0.032 0.968 21 C -0.133 4.133 22 C 0.116 3.884 23 H 0.044 0.956 24 H 0.096 0.904 25 H 0.046 0.954 26 H 0.268 0.732 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 8.824 21.608 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 H 0.077 0.923 4 C -0.562 4.562 5 H 0.043 0.957 6 C -0.191 4.191 7 N -0.593 5.593 8 Si 0.785 3.215 9 H -0.181 1.181 10 H -0.155 1.155 11 H -0.225 1.225 12 C 0.310 3.690 13 O -0.467 6.467 14 N -0.340 5.340 15 C -0.060 4.060 16 C -0.030 4.030 17 O -0.313 6.313 18 C -0.008 4.008 19 C -0.161 4.161 20 H 0.051 0.949 21 C -0.190 4.190 22 C -0.007 4.007 23 H 0.063 0.937 24 H 0.114 0.886 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.257 8.426 21.307 23.508 hybrid contribution 0.081 -0.364 -1.055 1.119 sum -5.177 8.062 20.251 22.403 Atomic orbital electron populations 1.22307 0.94286 1.01800 1.02152 1.19178 0.95611 0.96828 0.91009 0.92284 1.21121 1.31700 1.12810 0.90593 0.95652 1.26085 0.97511 1.00865 0.94679 1.70087 1.47671 1.42866 0.98725 0.85683 0.78897 0.78822 0.78071 1.18107 1.15519 1.22519 1.21209 0.78473 0.83550 0.85811 1.90539 1.39871 1.29102 1.87174 1.47836 1.51978 1.29207 1.04983 1.23415 0.94632 0.85369 1.02630 1.23156 0.81096 1.00713 0.98044 1.87490 1.20608 1.59378 1.63791 1.21694 1.00095 0.88108 0.90903 1.21616 0.97289 0.97863 0.99352 0.94884 1.21619 1.01245 0.98444 0.97722 1.21664 0.95177 0.95944 0.87907 0.93718 0.88567 0.93540 0.92352 0.89619 0.87811 0.86352 0.89676 0.89228 0.89894 0.89712 0.93491 0.91250 0.87302 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.86 8.19 71.98 0.59 -5.27 16 2 C 0.00 -0.23 1.40 -12.28 -0.02 -0.25 16 3 H 0.06 2.79 6.45 -2.38 -0.02 2.77 16 4 C -0.52 -32.94 8.96 25.60 0.23 -32.71 16 5 H 0.03 1.88 7.00 -2.91 -0.02 1.85 16 6 C 0.00 0.29 5.45 84.66 0.46 0.75 16 7 N -0.95 -63.03 13.96 21.45 0.30 -62.73 16 8 Si 0.96 44.32 24.37 68.60 1.67 45.99 16 9 H -0.26 -10.84 6.87 99.48 0.68 -10.16 16 10 H -0.23 -9.33 6.53 99.48 0.65 -8.68 16 11 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 12 C 0.52 24.52 7.02 87.66 0.62 25.14 16 13 O -0.59 -33.68 14.85 -3.03 -0.05 -33.73 16 14 N -0.61 -20.41 2.54 -815.20 -2.07 -22.48 16 15 C 0.06 1.45 4.85 86.50 0.42 1.86 16 16 C 0.05 0.83 6.50 72.42 0.47 1.30 16 17 O -0.39 -9.91 10.23 -144.89 -1.48 -11.39 16 18 C 0.07 1.38 5.26 70.32 0.37 1.75 16 19 C -0.14 -3.66 2.89 -11.64 -0.03 -3.69 16 20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 21 C -0.13 -2.54 9.15 71.98 0.66 -1.88 16 22 C 0.12 3.27 4.78 87.58 0.42 3.69 16 23 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.10 2.75 4.58 -2.39 -0.01 2.74 16 25 H 0.05 1.85 3.27 -2.39 -0.01 1.84 16 26 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 27 H 0.09 2.30 4.99 -2.39 -0.01 2.28 16 28 H 0.10 1.78 7.52 -2.38 -0.02 1.77 16 29 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 0.97 7.20 -2.39 -0.02 0.95 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.10 7.27 -2.39 -0.02 1.08 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 2.07 8.10 -2.38 -0.02 2.05 16 37 H 0.06 1.95 7.23 -2.39 -0.02 1.93 16 Total: -1.00 -84.84 279.81 3.53 -81.31 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.98 Total: 12.33 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.18 Total: -9.30 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.77 Total: -85.21 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.53 Total: -45.11 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.67 Total: 45.99 kcal Total: -84.84 3.53 -81.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831149562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.876 kcal (2) G-P(sol) polarization free energy of solvation -84.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds