Wall clock time and date at job start Mon Mar 30 2020 03:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47140 * 2 1 4 4 O 1.42904 * 109.47165 * 119.99292 * 2 1 3 5 5 C 1.42900 * 113.99599 * 90.00212 * 4 2 1 6 6 C 1.53003 * 109.47216 * 179.97438 * 5 4 2 7 7 C 1.50693 * 109.47295 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00310 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00205 * 180.02562 * 7 6 5 10 10 C 1.47579 * 134.49439 * 180.02562 * 9 7 6 11 11 C 1.53950 * 86.11621 * 204.63969 * 10 9 7 12 12 C 1.50698 * 113.74185 * 221.94108 * 11 10 9 13 13 H 1.08004 * 119.99782 * 358.07289 * 12 11 10 14 14 C 1.37878 * 120.00154 * 178.07233 * 12 11 10 15 15 N 1.31516 * 120.00026 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99786 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46951 * 90.00010 * 16 14 12 18 18 H 1.48503 * 109.47171 * 209.99585 * 16 14 12 19 19 H 1.48492 * 109.47519 * 329.99937 * 16 14 12 20 20 C 1.47925 * 134.49772 * 0.02562 * 9 7 6 21 21 H 1.09003 * 109.46886 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47619 * 300.00285 * 1 2 3 23 23 H 1.08995 * 109.47375 * 60.00270 * 1 2 3 24 24 H 1.09001 * 109.47619 * 239.99715 * 2 1 3 25 25 H 1.09002 * 109.47197 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.46623 * 299.99353 * 3 2 1 27 27 H 1.08996 * 109.47436 * 59.99733 * 3 2 1 28 28 H 1.09003 * 109.47545 * 59.99903 * 5 4 2 29 29 H 1.09001 * 109.47180 * 300.00043 * 5 4 2 30 30 H 1.09003 * 109.46810 * 59.99615 * 6 5 4 31 31 H 1.09001 * 109.47213 * 300.00184 * 6 5 4 32 32 H 1.09003 * 113.77049 * 90.34034 * 10 9 7 33 33 H 1.08993 * 113.77081 * 318.93795 * 10 9 7 34 34 H 1.09002 * 113.74276 * 90.74001 * 11 10 9 35 35 H 0.96999 * 120.00183 * 180.02562 * 15 14 12 36 36 H 1.09006 * 113.87423 * 41.10256 * 20 9 7 37 37 H 1.08997 * 113.77410 * 269.60428 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2001 -2.0781 0.9888 6 6 2.7091 -2.6923 2.2944 7 6 2.9128 -4.1736 2.1068 8 8 2.6748 -4.6874 1.0343 9 7 3.3595 -4.9274 3.1308 10 6 3.6657 -6.3608 3.3034 11 6 3.4044 -6.1287 4.8027 12 6 4.3934 -6.8206 5.7051 13 1 5.1724 -7.4367 5.2808 14 6 4.3037 -6.6671 7.0724 15 7 5.1665 -7.2713 7.8599 16 14 2.9559 -5.6021 7.8062 17 1 1.7554 -6.4353 8.0706 18 1 3.4344 -5.0055 9.0792 19 1 2.6064 -4.5190 6.8525 20 6 3.7399 -4.6506 4.5333 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 2.9319 -2.2467 0.1988 29 1 1.2538 -2.5433 0.7127 30 1 1.9775 -2.5237 3.0847 31 1 3.6555 -2.2270 2.5701 32 1 4.6989 -6.6203 3.0725 33 1 2.9429 -7.0246 2.8292 34 1 2.3690 -6.2968 5.0990 35 1 5.1032 -7.1637 8.8218 36 1 3.0763 -3.9500 5.0403 37 1 4.7948 -4.4088 4.6629 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855475404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:41 Heat of formation + Delta-G solvation = -81.865989 kcal Electronic energy + Delta-G solvation = -17129.017925 eV Core-core repulsion = 14292.528029 eV Total energy + Delta-G solvation = -2836.489896 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16516 -39.50471 -38.66978 -34.64671 -34.30521 -32.25721 -30.83404 -28.13064 -27.34355 -26.86692 -24.31496 -22.28431 -21.63575 -19.77325 -19.13324 -18.37680 -17.44847 -17.10819 -16.73217 -16.36097 -15.86923 -15.73125 -15.09454 -14.81066 -14.48708 -14.01113 -13.77033 -13.50900 -13.35599 -13.31471 -13.08300 -12.77301 -12.57998 -12.51319 -12.39602 -12.14080 -11.82901 -11.65396 -11.60710 -11.26359 -10.83265 -10.62636 -10.57554 -9.63873 -8.26021 -6.34203 1.44108 1.46022 1.55368 1.56519 1.81561 2.40798 2.69942 3.06989 3.58231 3.86453 3.95878 4.04104 4.11959 4.15175 4.28863 4.33148 4.39969 4.48868 4.58556 4.65843 4.75161 4.77165 4.79617 4.80832 4.89516 4.91116 4.95823 4.99750 5.27899 5.33367 5.39553 5.61931 6.23589 6.28739 6.70545 6.82456 7.07972 7.33474 8.89635 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036479 B = 0.004511 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.377719 B = 6206.080019 C = 6642.721524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 C -0.146 4.146 4 O -0.397 6.397 5 C 0.087 3.913 6 C -0.125 4.125 7 C 0.529 3.471 8 O -0.595 6.595 9 N -0.641 5.641 10 C 0.117 3.883 11 C -0.014 4.014 12 C -0.518 4.518 13 H 0.039 0.961 14 C 0.018 3.982 15 N -0.946 5.946 16 Si 0.939 3.061 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.222 1.222 20 C 0.098 3.902 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.267 0.733 36 H 0.090 0.910 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 16.615 -11.781 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 C -0.203 4.203 4 O -0.318 6.318 5 C 0.010 3.990 6 C -0.165 4.165 7 C 0.320 3.680 8 O -0.478 6.478 9 N -0.375 5.375 10 C -0.005 4.005 11 C -0.034 4.034 12 C -0.556 4.556 13 H 0.057 0.943 14 C -0.180 4.180 15 N -0.585 5.585 16 Si 0.762 3.238 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.144 1.144 20 C -0.023 4.023 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.450 16.548 -12.152 22.202 hybrid contribution -0.097 -0.405 0.466 0.625 sum -8.547 16.144 -11.686 21.685 Atomic orbital electron populations 1.22289 0.95230 1.02172 1.03365 1.22349 0.94436 0.94443 0.87542 1.21869 1.01635 0.93409 1.03380 1.87837 1.86973 1.19711 1.37233 1.21988 0.99810 0.81167 0.95997 1.21361 1.05491 0.89470 1.00171 1.20627 0.76274 0.89274 0.81793 1.90638 1.54963 1.75447 1.26756 1.50434 1.63280 1.10984 1.12787 1.23169 1.00281 0.81330 0.95752 1.20883 0.97331 0.92898 0.92263 1.21012 1.13496 1.29856 0.91195 0.94315 1.25902 0.98076 0.96528 0.97491 1.70050 1.38642 1.45089 1.04737 0.85898 0.78845 0.80451 0.78588 1.20139 1.21590 1.14446 1.24027 1.00981 1.00005 0.77329 0.93311 0.91958 0.89732 0.91878 0.92308 0.89214 0.91977 0.93125 0.93202 0.86984 0.86885 0.90500 0.91078 0.91749 0.92379 0.89191 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.53 71.98 0.69 -2.07 16 2 C 0.07 1.27 3.34 30.59 0.10 1.37 16 3 C -0.15 -2.08 9.56 71.98 0.69 -1.39 16 4 O -0.40 -9.50 9.99 -148.98 -1.49 -10.99 16 5 C 0.09 2.24 5.04 71.98 0.36 2.60 16 6 C -0.13 -3.31 5.82 29.85 0.17 -3.14 16 7 C 0.53 18.38 8.06 87.65 0.71 19.09 16 8 O -0.60 -24.39 16.71 -3.04 -0.05 -24.44 16 9 N -0.64 -23.16 3.62 -835.83 -3.02 -26.19 16 10 C 0.12 4.54 8.39 86.49 0.73 5.27 16 11 C -0.01 -0.59 2.89 -10.88 -0.03 -0.63 16 12 C -0.52 -26.88 9.33 25.60 0.24 -26.64 16 13 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 14 C 0.02 0.97 5.47 84.65 0.46 1.44 16 15 N -0.95 -55.65 13.96 21.45 0.30 -55.35 16 16 Si 0.94 39.33 27.08 68.60 1.86 41.19 16 17 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.22 -7.90 5.28 99.48 0.53 -7.37 16 20 C 0.10 3.49 7.27 86.42 0.63 4.12 16 21 H 0.05 0.86 7.87 -2.39 -0.02 0.84 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 1.34 8.04 -2.39 -0.02 1.32 16 29 H 0.05 1.32 7.83 -2.39 -0.02 1.30 16 30 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.08 3.03 8.09 -2.39 -0.02 3.01 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.06 2.62 7.20 -2.39 -0.02 2.60 16 35 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.09 2.79 6.83 -2.38 -0.02 2.77 16 37 H 0.09 3.15 8.09 -2.39 -0.02 3.13 16 Total: -1.00 -63.90 308.79 3.18 -60.72 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.84 Total: 15.04 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.74 Total: 0.02 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -2.72 Total: -81.53 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.54 Total: -35.43 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.86 Total: 41.19 kcal Total: -63.90 3.18 -60.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855475404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.151 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds