Wall clock time and date at job start Mon Mar 30 2020 04:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.47086 * 2 1 4 4 C 1.34220 * 116.99922 * 179.97438 * 3 2 1 5 5 O 1.20834 * 120.00417 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00321 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47654 * 180.02562 * 6 4 3 8 8 N 1.46903 * 109.47114 * 179.97438 * 7 6 4 9 9 C 1.46903 * 110.99590 * 190.00012 * 8 7 6 10 10 C 1.50702 * 109.46747 * 161.83513 * 9 8 7 11 11 H 1.07994 * 120.00488 * 354.36613 * 10 9 8 12 12 C 1.37880 * 119.99354 * 174.36327 * 10 9 8 13 13 N 1.31513 * 120.00789 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99642 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47000 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47316 * 120.00180 * 14 12 10 17 17 H 1.48499 * 109.47166 * 240.00501 * 14 12 10 18 18 C 1.46903 * 111.00027 * 66.04868 * 8 7 6 19 19 C 1.52999 * 117.49515 * 261.90693 * 18 8 7 20 20 C 1.53002 * 117.49518 * 193.24957 * 18 8 7 21 21 H 1.09001 * 109.47022 * 59.99554 * 1 2 3 22 22 H 1.09001 * 109.47031 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46969 * 299.99829 * 1 2 3 24 24 H 1.08998 * 109.46697 * 240.00901 * 2 1 3 25 25 H 1.08992 * 109.47220 * 120.00546 * 2 1 3 26 26 H 1.09004 * 109.47615 * 60.00030 * 6 4 3 27 27 H 1.09007 * 109.47213 * 300.00515 * 6 4 3 28 28 H 1.08994 * 109.46802 * 299.99970 * 7 6 4 29 29 H 1.09001 * 109.47094 * 60.00121 * 7 6 4 30 30 H 1.09002 * 109.46847 * 281.83424 * 9 8 7 31 31 H 1.08995 * 109.47379 * 41.83637 * 9 8 7 32 32 H 0.96993 * 120.00181 * 179.97438 * 13 12 10 33 33 H 1.08995 * 115.54940 * 47.57764 * 18 8 7 34 34 H 1.09000 * 117.49750 * 0.02562 * 19 18 8 35 35 H 1.09003 * 117.49574 * 145.01910 * 19 18 8 36 36 H 1.09000 * 117.49019 * 214.97505 * 20 18 8 37 37 H 1.08998 * 117.50094 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4487 2.8573 0.0010 8 7 6.0101 4.2148 0.0010 9 6 7.4594 4.1850 -0.2372 10 6 7.9253 5.5510 -0.6709 11 1 7.2052 6.3360 -0.8486 12 6 9.2710 5.7985 -0.8408 13 7 10.1480 4.8425 -0.6249 14 14 9.8486 7.4915 -1.3790 15 1 8.6736 8.3826 -1.5547 16 1 10.7495 8.0594 -0.3442 17 1 10.5816 7.3786 -2.6656 18 6 5.6970 4.9141 1.2544 19 6 4.5054 5.8738 1.2491 20 6 5.9326 6.4252 1.2982 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.5846 3.4693 0.8912 27 1 3.5851 3.4698 -0.8888 28 1 5.7846 2.3248 0.8907 29 1 5.7846 2.3256 -0.8892 30 1 7.9728 3.9006 0.6813 31 1 7.6843 3.4594 -1.0188 32 1 11.0946 5.0167 -0.7448 33 1 5.8839 4.3489 2.1674 34 1 3.9537 5.9860 0.3158 35 1 3.9087 5.9403 2.1589 36 1 6.2742 6.8541 2.2402 37 1 6.3204 6.9004 0.3971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:59 Heat of formation + Delta-G solvation = -61.819035 kcal Electronic energy + Delta-G solvation = -17358.913861 eV Core-core repulsion = 14523.293266 eV Total energy + Delta-G solvation = -2835.620595 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38268 -37.85063 -36.58229 -33.82340 -32.79335 -31.92064 -30.37597 -26.72275 -24.08691 -22.59050 -22.24685 -21.61428 -20.57270 -19.37817 -17.57021 -16.73492 -16.52070 -16.09020 -15.02546 -14.90351 -14.53250 -14.15417 -13.64212 -13.19495 -12.92613 -12.71347 -12.64840 -12.07158 -11.95079 -11.78477 -11.61951 -11.14765 -10.96504 -10.80944 -10.75278 -10.60675 -10.53938 -10.33873 -9.90908 -9.54967 -9.15299 -9.09508 -8.38784 -7.34288 -5.99449 -3.99625 2.34255 2.70326 3.32171 3.39883 3.43489 4.41582 4.55355 4.66675 4.75242 4.82209 4.99648 5.09267 5.25537 5.36102 5.38380 5.55849 5.57643 5.64773 5.72856 5.76275 5.89663 6.03597 6.15812 6.24592 6.39415 6.43029 6.52420 6.70160 7.01411 7.22603 7.39796 7.83740 7.88618 8.11222 8.18205 8.53687 9.06656 9.62969 11.11375 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039740 B = 0.004729 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.411697 B = 5919.474098 C = 6348.561683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.510 6.510 6 C -0.107 4.107 7 C 0.072 3.928 8 N -0.510 5.510 9 C 0.195 3.805 10 C -0.499 4.499 11 H 0.070 0.930 12 C 0.053 3.947 13 N -0.900 5.900 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.020 3.980 19 C -0.189 4.189 20 C -0.154 4.154 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.032 0.968 29 H 0.078 0.922 30 H -0.001 1.001 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 -4.760 2.892 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.306 3.694 5 O -0.398 6.398 6 C -0.145 4.145 7 C -0.057 4.057 8 N -0.235 5.235 9 C 0.071 3.929 10 C -0.537 4.537 11 H 0.088 0.912 12 C -0.148 4.148 13 N -0.540 5.540 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.089 4.089 19 C -0.227 4.227 20 C -0.191 4.191 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.017 0.983 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.479 -4.860 2.494 17.361 hybrid contribution 0.905 0.128 0.430 1.010 sum -15.574 -4.732 2.924 16.537 Atomic orbital electron populations 1.21799 0.92812 1.02765 1.03499 1.22976 0.95213 0.80735 1.02506 1.86525 1.25146 1.31954 1.84322 1.24086 0.80136 0.93323 0.71849 1.90666 1.60308 1.43478 1.45321 1.21454 0.97441 0.89381 1.06195 1.21778 0.90625 0.91637 1.01654 1.61905 1.17712 1.13398 1.30514 1.19734 0.79287 0.98052 0.95834 1.21272 0.91448 0.96640 1.44352 0.91213 1.24993 0.96827 0.97029 0.95917 1.69969 1.01693 1.32302 1.49989 0.86495 0.78755 0.84331 0.78164 1.19612 1.21192 1.21135 1.22122 1.02318 0.92439 0.92033 1.23090 0.91725 1.06087 1.01784 1.23156 0.96564 0.95682 1.03685 0.91474 0.90439 0.91527 0.91331 0.91414 0.87701 0.87119 0.94964 0.90386 0.98279 0.95524 0.93053 0.91270 0.88855 0.90188 0.90185 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.73 10.22 -39.23 -0.40 -5.13 16 4 C 0.46 6.97 7.96 36.00 0.29 7.26 16 5 O -0.51 -9.13 15.73 -18.76 -0.30 -9.42 16 6 C -0.11 -1.57 5.63 -27.88 -0.16 -1.72 16 7 C 0.07 1.33 4.24 -3.82 -0.02 1.31 16 8 N -0.51 -10.76 4.58 -228.08 -1.05 -11.80 16 9 C 0.20 5.05 4.75 -4.97 -0.02 5.03 16 10 C -0.50 -13.59 7.82 -34.44 -0.27 -13.86 16 11 H 0.07 1.86 5.55 -52.49 -0.29 1.57 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 14 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.02 0.38 4.20 -67.71 -0.28 0.10 16 19 C -0.19 -2.95 9.31 -26.69 -0.25 -3.20 16 20 C -0.15 -2.86 9.41 -26.69 -0.25 -3.11 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 25 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.10 1.42 6.61 -51.93 -0.34 1.07 16 27 H 0.11 1.52 8.14 -51.92 -0.42 1.10 16 28 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.08 1.52 7.80 -51.93 -0.40 1.12 16 30 H 0.00 -0.02 8.02 -51.93 -0.42 -0.44 16 31 H 0.03 0.74 7.76 -51.93 -0.40 0.33 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.12 2.51 5.32 -51.93 -0.28 2.24 16 LS Contribution 308.79 15.07 4.65 4.65 Total: -1.00 -30.66 308.79 -7.74 -38.40 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.92 Total: -0.42 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.45 Total: -6.68 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.31 Total: -37.77 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.70 Total: -14.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.66 -7.74 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.420 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds