Wall clock time and date at job start Mon Mar 30 2020 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34237 * 116.99651 * 2 1 4 4 O 1.20825 * 119.99829 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99963 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47460 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.46848 * 54.99750 * 6 5 3 8 8 C 1.52995 * 109.47731 * 175.00309 * 6 5 3 9 9 N 1.46902 * 109.47010 * 295.00619 * 6 5 3 10 10 C 1.46903 * 110.99814 * 174.99643 * 9 6 5 11 11 C 1.50696 * 109.47271 * 291.83440 * 10 9 6 12 12 H 1.07997 * 120.00099 * 4.31524 * 11 10 9 13 13 C 1.37874 * 120.00001 * 184.31602 * 11 10 9 14 14 N 1.31516 * 120.00333 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00111 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46965 * 59.99693 * 15 13 11 17 17 H 1.48500 * 109.47253 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46825 * 299.99721 * 15 13 11 19 19 C 1.46904 * 110.99571 * 298.94694 * 9 6 5 20 20 C 1.53005 * 117.49857 * 244.59273 * 19 9 6 21 21 C 1.53004 * 60.00038 * 252.51781 * 20 19 9 22 22 H 1.09008 * 109.47133 * 59.99935 * 1 2 3 23 23 H 1.09003 * 109.46931 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47360 * 300.00157 * 1 2 3 25 25 H 1.09004 * 109.46878 * 59.99943 * 5 3 2 26 26 H 1.09005 * 109.47216 * 300.00615 * 5 3 2 27 27 H 1.09002 * 109.47703 * 180.02562 * 8 6 5 28 28 H 1.09003 * 109.46770 * 300.00176 * 8 6 5 29 29 H 1.08993 * 109.47280 * 59.99285 * 8 6 5 30 30 H 1.08998 * 109.47214 * 51.83812 * 10 9 6 31 31 H 1.09004 * 109.46652 * 171.83238 * 10 9 6 32 32 H 0.96994 * 120.00632 * 180.02562 * 14 13 11 33 33 H 1.08995 * 115.55093 * 30.30324 * 19 9 6 34 34 H 1.08995 * 117.49873 * 359.97438 * 20 19 9 35 35 H 1.08992 * 117.49464 * 145.02402 * 20 19 9 36 36 H 1.09005 * 117.49421 * 252.51583 * 21 20 19 37 37 H 1.08998 * 117.50289 * 107.49444 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 1 3.5374 3.2575 0.8429 8 6 5.5226 2.8239 0.1273 9 7 3.5779 3.3781 -1.2541 10 6 3.8723 4.8172 -1.2401 11 6 2.9880 5.5011 -0.2296 12 1 2.3281 4.9163 0.3940 13 6 3.0215 6.8735 -0.1011 14 7 3.8254 7.5857 -0.8601 15 14 1.9258 7.7212 1.1521 16 1 2.2545 7.2253 2.5127 17 1 2.1492 9.1881 1.0930 18 1 0.5031 7.4240 0.8471 19 6 4.2028 2.7240 -2.4116 20 6 5.1764 3.5535 -3.2513 21 6 3.7919 3.2084 -3.8036 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.9563 0.7807 -0.8892 26 1 3.9557 0.7810 0.8908 27 1 5.8316 3.8692 0.1282 28 1 5.8357 2.3521 1.0587 29 1 5.9851 2.3086 -0.7143 30 1 4.9175 4.9717 -0.9720 31 1 3.6853 5.2359 -2.2290 32 1 3.8493 8.5511 -0.7694 33 1 4.4193 1.6625 -2.2916 34 1 5.3529 4.5846 -2.9451 35 1 6.0336 3.0377 -3.6838 36 1 3.7384 2.4654 -4.5994 37 1 3.0579 4.0122 -3.8605 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547300.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:21 Heat of formation + Delta-G solvation = -48.687433 kcal Electronic energy + Delta-G solvation = -18387.381346 eV Core-core repulsion = 15552.330180 eV Total energy + Delta-G solvation = -2835.051166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04815 -38.46779 -36.01457 -34.39006 -32.76345 -30.39563 -28.32293 -26.77581 -26.26311 -22.78522 -21.91661 -21.61502 -20.46971 -18.15751 -17.07015 -16.59183 -16.31877 -15.83587 -15.43373 -14.86708 -14.22421 -13.64844 -13.30773 -13.27076 -12.81562 -12.35122 -12.02747 -11.78679 -11.77521 -11.62927 -11.25736 -10.96565 -10.85187 -10.67881 -10.59724 -10.42438 -10.08821 -10.05065 -9.84735 -9.75458 -9.53353 -8.98704 -8.33022 -6.96767 -5.93870 -3.92585 2.80686 3.10012 3.40066 3.43105 3.48462 4.40838 4.53395 4.87234 5.14828 5.21900 5.29993 5.37277 5.41503 5.47013 5.53723 5.63932 5.66845 5.76722 5.82290 5.90700 6.00572 6.16022 6.21240 6.35898 6.62947 6.66015 6.80466 6.83089 6.83439 7.37938 7.43026 7.93521 8.18678 8.27469 8.34070 8.65482 9.17348 9.70634 11.17123 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.009177 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.697139 B = 3050.309438 C = 3928.502169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.450 3.550 4 O -0.460 6.460 5 C -0.106 4.106 6 C 0.098 3.902 7 H 0.101 0.899 8 C -0.179 4.179 9 N -0.487 5.487 10 C 0.191 3.809 11 C -0.499 4.499 12 H 0.067 0.933 13 C 0.054 3.946 14 N -0.903 5.903 15 Si 0.895 3.105 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.277 1.277 19 C 0.021 3.979 20 C -0.222 4.222 21 C -0.177 4.177 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.050 0.950 30 H -0.002 1.002 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -14.446 0.160 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.295 6.295 3 C 0.290 3.710 4 O -0.343 6.343 5 C -0.144 4.144 6 C -0.011 4.011 7 H 0.119 0.881 8 C -0.238 4.238 9 N -0.208 5.208 10 C 0.067 3.933 11 C -0.538 4.538 12 H 0.085 0.915 13 C -0.147 4.147 14 N -0.543 5.543 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.089 4.089 20 C -0.262 4.262 21 C -0.215 4.215 22 H 0.079 0.921 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.417 -13.970 0.111 13.977 hybrid contribution 0.089 0.718 0.548 0.908 sum -0.328 -13.252 0.660 13.272 Atomic orbital electron populations 1.23111 0.77368 1.02670 1.02456 1.86483 1.22722 1.34853 1.85411 1.23702 0.92169 0.81160 0.73919 1.90792 1.66327 1.35510 1.41621 1.21642 0.87923 1.00343 1.04496 1.21441 0.93014 0.90778 0.95875 0.88122 1.22428 0.97249 1.03395 1.00707 1.62233 1.54320 1.05908 0.98341 1.19850 0.95024 0.80358 0.98079 1.21226 1.22271 0.91230 1.19066 0.91458 1.24951 0.95876 0.97449 0.96378 1.69942 1.38419 1.06184 1.39788 0.86599 0.81300 0.77969 0.81762 1.20403 1.21549 1.20257 1.22661 0.99586 0.96590 0.90098 1.23552 0.92867 1.03173 1.06576 1.22972 0.98444 1.03669 0.96392 0.92100 0.88948 0.92309 0.88465 0.88371 0.90859 0.93141 0.93056 0.98394 0.94653 0.93076 0.88053 0.87476 0.90271 0.89836 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.38 -5.54 10.57 -39.28 -0.41 -5.96 16 3 C 0.45 7.73 7.82 36.00 0.28 8.01 16 4 O -0.46 -9.90 15.10 -18.75 -0.28 -10.18 16 5 C -0.11 -1.57 5.17 -27.89 -0.14 -1.71 16 6 C 0.10 1.82 1.76 -67.72 -0.12 1.70 16 7 H 0.10 2.17 6.62 -51.93 -0.34 1.83 16 8 C -0.18 -2.94 8.66 37.16 0.32 -2.61 16 9 N -0.49 -10.42 3.82 -220.14 -0.84 -11.26 16 10 C 0.19 4.92 3.19 -4.98 -0.02 4.90 16 11 C -0.50 -14.31 8.55 -34.44 -0.29 -14.61 16 12 H 0.07 1.98 7.12 -52.49 -0.37 1.61 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 15 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 C 0.02 0.38 4.38 -67.70 -0.30 0.08 16 20 C -0.22 -3.95 9.54 -26.73 -0.25 -4.21 16 21 C -0.18 -3.14 9.95 -26.73 -0.27 -3.40 16 22 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 25 H 0.10 1.27 5.99 -51.93 -0.31 0.96 16 26 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.41 6.36 -51.93 -0.33 1.08 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.76 7.13 -51.93 -0.37 0.39 16 30 H 0.00 -0.04 5.67 -51.93 -0.29 -0.33 16 31 H 0.04 0.99 6.05 -51.93 -0.31 0.68 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.10 1.57 5.93 -51.93 -0.31 1.26 16 34 H 0.11 2.23 5.95 -51.93 -0.31 1.92 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.10 1.95 7.53 -51.93 -0.39 1.56 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -32.22 298.32 -6.59 -38.81 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.44 Total: 1.86 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 0.18 Total: -8.86 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.11 Total: -37.64 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.70 Total: -16.14 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.22 -6.59 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547300.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.880 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds