Wall clock time and date at job start Mon Mar 30 2020 04:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45204 * 109.46956 * 2 1 4 4 C 1.34233 * 116.99960 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99968 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99919 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46803 * 59.99767 * 6 4 3 8 8 C 1.52999 * 109.46922 * 300.00089 * 6 4 3 9 9 N 1.46903 * 109.47036 * 179.97438 * 6 4 3 10 10 C 1.46896 * 110.99855 * 205.00100 * 9 6 4 11 11 C 1.52996 * 109.47075 * 173.89562 * 10 9 6 12 12 C 1.50709 * 115.56268 * 39.61304 * 11 10 9 13 13 H 1.07995 * 119.99955 * 262.49501 * 12 11 10 14 14 C 1.37874 * 119.99627 * 82.49473 * 12 11 10 15 15 N 1.31513 * 120.00272 * 351.33870 * 14 12 11 16 16 Si 1.86802 * 119.99784 * 171.34102 * 14 12 11 17 17 H 1.48502 * 109.47084 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47065 * 119.99745 * 16 14 12 19 19 H 1.48498 * 109.47344 * 240.00056 * 16 14 12 20 20 C 1.53001 * 117.50261 * 185.30562 * 11 10 9 21 21 C 1.52993 * 60.03323 * 107.47712 * 20 11 10 22 22 H 1.09001 * 109.46922 * 59.99905 * 1 2 3 23 23 H 1.09000 * 109.46620 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46527 * 299.99694 * 1 2 3 25 25 H 1.09002 * 109.46895 * 240.00652 * 2 1 3 26 26 H 1.08998 * 109.47410 * 119.99971 * 2 1 3 27 27 H 1.09007 * 109.46582 * 179.97438 * 8 6 4 28 28 H 1.08994 * 109.47522 * 299.99463 * 8 6 4 29 29 H 1.08998 * 109.47398 * 60.00166 * 8 6 4 30 30 H 1.00905 * 110.99493 * 81.05019 * 9 6 4 31 31 H 1.09002 * 109.47050 * 53.89718 * 10 9 6 32 32 H 1.08999 * 109.47241 * 293.89202 * 10 9 6 33 33 H 0.96996 * 120.00361 * 185.01929 * 15 14 12 34 34 H 1.08994 * 117.49828 * 214.97853 * 20 11 10 35 35 H 1.09000 * 117.49399 * 359.97438 * 20 11 10 36 36 H 1.08997 * 117.50136 * 107.50605 * 21 20 11 37 37 H 1.09004 * 117.50126 * 252.52614 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5850 3.4699 0.8888 8 6 3.4487 3.6841 -1.2504 9 7 5.3878 2.8607 -0.0010 10 6 5.9784 4.0746 0.5780 11 6 7.4929 3.8961 0.7012 12 6 8.1600 3.1879 -0.4498 13 1 8.3767 2.1321 -0.3817 14 6 8.4936 3.8881 -1.5898 15 7 8.0808 5.1271 -1.7450 16 14 9.5319 3.0768 -2.9138 17 1 9.8646 1.6895 -2.5013 18 1 8.7713 3.0444 -4.1888 19 1 10.7847 3.8510 -3.1043 20 6 8.2808 5.0061 1.3997 21 6 8.0656 3.6639 2.1017 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8649 4.6915 -1.2506 28 1 3.7843 3.1518 -2.1404 29 1 2.3602 3.7411 -1.2501 30 1 5.7412 2.6950 -0.9315 31 1 5.5518 4.2508 1.5655 32 1 5.7644 4.9264 -0.0675 33 1 8.2530 5.5951 -2.5769 34 1 9.2814 5.2243 1.0268 35 1 7.7200 5.8639 1.7712 36 1 8.9247 2.9990 2.1906 37 1 7.3630 3.6384 2.9347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:35 Heat of formation + Delta-G solvation = -84.033831 kcal Electronic energy + Delta-G solvation = -17719.712585 eV Core-core repulsion = 14883.128685 eV Total energy + Delta-G solvation = -2836.583901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46513 -38.89463 -37.65464 -36.40336 -33.95544 -32.67339 -31.04677 -27.55232 -26.49065 -25.31183 -23.46492 -22.84061 -21.54303 -20.97512 -18.71767 -17.93102 -17.55208 -17.22072 -16.55848 -15.98995 -15.66288 -15.56692 -15.00126 -14.49407 -14.40775 -13.65911 -13.59708 -13.36864 -13.23866 -13.05144 -12.89483 -12.83203 -12.74147 -12.51202 -12.37573 -12.29742 -11.95204 -11.46979 -11.43027 -11.17370 -10.72000 -10.41245 -9.92494 -9.06839 -8.06005 -6.12787 1.28367 1.39007 1.44112 1.54202 1.65204 2.45537 3.20380 3.38533 3.68381 3.78795 4.00799 4.06569 4.11728 4.14440 4.37858 4.39448 4.59706 4.71223 4.75765 4.77610 4.88908 4.94516 4.95785 5.04623 5.12706 5.16441 5.20908 5.30548 5.50117 5.61270 5.67156 5.83415 6.32188 6.51527 6.60802 6.90175 6.92771 7.52633 9.01257 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.006146 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.767691 B = 4554.624501 C = 4975.537519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.525 6.525 6 C 0.093 3.907 7 H 0.127 0.873 8 C -0.165 4.165 9 N -0.669 5.669 10 C 0.123 3.877 11 C 0.022 3.978 12 C -0.490 4.490 13 H 0.042 0.958 14 C 0.034 3.966 15 N -0.902 5.902 16 Si 0.937 3.063 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.284 1.284 20 C -0.164 4.164 21 C -0.191 4.191 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.348 0.652 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.259 0.741 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -3.753 2.472 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.310 3.690 5 O -0.413 6.413 6 C -0.019 4.019 7 H 0.145 0.855 8 C -0.224 4.224 9 N -0.301 5.301 10 C -0.005 4.005 11 C 0.021 3.979 12 C -0.528 4.528 13 H 0.060 0.940 14 C -0.166 4.166 15 N -0.540 5.540 16 Si 0.764 3.236 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.210 1.210 20 C -0.202 4.202 21 C -0.228 4.228 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.168 0.832 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.473 -4.262 2.957 15.375 hybrid contribution 0.923 0.088 -1.548 1.804 sum -13.550 -4.174 1.410 14.248 Atomic orbital electron populations 1.21803 0.89929 1.04335 1.03827 1.23271 0.97320 0.79582 1.02147 1.86495 1.23686 1.33410 1.84039 1.24117 0.80478 0.92890 0.71520 1.90639 1.61235 1.43923 1.45458 1.21187 0.90018 0.88551 1.02165 0.85547 1.22314 1.03525 1.00675 0.95856 1.59975 1.01850 1.38766 1.29522 1.21229 0.93911 0.88834 0.96552 1.18983 0.90981 0.97706 0.90190 1.20521 1.37966 0.94247 1.00108 0.94022 1.25461 0.96386 0.95118 0.99646 1.70056 1.46781 1.11501 1.25686 0.85835 0.79316 0.78652 0.79797 1.20160 1.20609 1.20959 1.22481 1.00778 0.91544 1.05432 1.22993 1.03086 0.99572 0.97188 0.91142 0.88244 0.91053 0.91944 0.91787 0.91261 0.93168 0.88838 0.83186 0.92227 0.96017 0.93194 0.92530 0.90384 0.91325 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 10.29 71.98 0.74 -1.26 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.36 -9.88 10.12 -51.44 -0.52 -10.40 16 4 C 0.47 15.86 7.32 71.24 0.52 16.38 16 5 O -0.53 -21.87 16.18 21.98 0.36 -21.52 16 6 C 0.09 3.01 3.10 44.17 0.14 3.15 16 7 H 0.13 3.56 7.70 -2.39 -0.02 3.54 16 8 C -0.16 -4.67 9.10 71.98 0.65 -4.02 16 9 N -0.67 -27.87 5.48 -495.45 -2.72 -30.58 16 10 C 0.12 5.28 5.63 86.30 0.49 5.77 16 11 C 0.02 1.07 1.71 -52.90 -0.09 0.98 16 12 C -0.49 -26.62 7.48 25.60 0.19 -26.42 16 13 H 0.04 2.39 7.83 -2.91 -0.02 2.37 16 14 C 0.03 1.84 5.39 84.65 0.46 2.30 16 15 N -0.90 -49.46 13.11 21.45 0.28 -49.18 16 16 Si 0.94 43.60 29.55 68.60 2.03 45.62 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 C -0.16 -7.58 9.67 30.59 0.30 -7.29 16 21 C -0.19 -8.37 9.88 30.62 0.30 -8.06 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 23 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 25 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 26 H 0.06 1.46 8.13 -2.39 -0.02 1.45 16 27 H 0.07 2.05 7.58 -2.38 -0.02 2.04 16 28 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 29 H 0.09 2.10 8.11 -2.39 -0.02 2.08 16 30 H 0.35 16.19 7.49 -89.69 -0.67 15.52 16 31 H 0.06 2.27 7.71 -2.39 -0.02 2.25 16 32 H 0.02 0.99 7.59 -2.39 -0.02 0.97 16 33 H 0.26 13.64 8.32 -92.71 -0.77 12.87 16 34 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.09 3.41 8.08 -2.39 -0.02 3.39 16 Total: -1.00 -62.25 315.19 3.94 -58.31 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.37 Total: 24.65 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.14 Total: -16.90 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.43 Total: -79.76 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.17 Total: -31.92 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -62.25 3.94 -58.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.724 kcal (2) G-P(sol) polarization free energy of solvation -62.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds