Wall clock time and date at job start Mon Mar 30 2020 03:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46604 * 2 1 4 4 C 1.50695 * 109.47037 * 239.99578 * 2 1 3 5 5 O 1.20829 * 120.00164 * 239.99473 * 4 2 1 6 6 O 1.34225 * 119.99994 * 60.00611 * 4 2 1 7 7 C 1.52997 * 109.46952 * 119.99506 * 2 1 3 8 8 H 1.09000 * 109.47420 * 172.69957 * 7 2 1 9 9 C 1.53005 * 109.47213 * 52.69933 * 7 2 1 10 10 N 1.46903 * 109.47427 * 292.69937 * 7 2 1 11 11 C 1.46899 * 110.99783 * 300.75422 * 10 7 2 12 12 C 1.50704 * 109.47158 * 161.39096 * 11 10 7 13 13 H 1.08007 * 119.99895 * 353.95063 * 12 11 10 14 14 C 1.37873 * 120.00237 * 173.95406 * 12 11 10 15 15 N 1.31515 * 120.00061 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00084 * 179.72379 * 14 12 11 17 17 H 1.48495 * 109.46998 * 89.99895 * 16 14 12 18 18 H 1.48502 * 109.47182 * 210.00035 * 16 14 12 19 19 H 1.48501 * 109.47036 * 330.00024 * 16 14 12 20 20 C 1.46891 * 111.00127 * 176.79981 * 10 7 2 21 21 C 1.53002 * 117.50040 * 268.16145 * 20 10 7 22 22 C 1.52999 * 60.00160 * 252.51278 * 21 20 10 23 23 H 1.08995 * 109.46942 * 181.74224 * 1 2 3 24 24 H 1.09001 * 109.47201 * 301.74685 * 1 2 3 25 25 H 1.09000 * 109.46794 * 61.74284 * 1 2 3 26 26 H 0.96701 * 116.99967 * 180.02562 * 6 4 2 27 27 H 1.09001 * 109.46753 * 301.51672 * 9 7 2 28 28 H 1.08997 * 109.46786 * 61.51149 * 9 7 2 29 29 H 1.08996 * 109.47083 * 181.50919 * 9 7 2 30 30 H 1.09002 * 109.47008 * 41.39500 * 11 10 7 31 31 H 1.08995 * 109.47152 * 281.39075 * 11 10 7 32 32 H 0.96994 * 119.99973 * 180.02562 * 15 14 12 33 33 H 1.09000 * 115.55013 * 53.87196 * 20 10 7 34 34 H 1.08998 * 117.49749 * 0.02562 * 21 20 10 35 35 H 1.09001 * 117.49789 * 145.01769 * 21 20 10 36 36 H 1.08998 * 117.49646 * 252.51070 * 22 21 20 37 37 H 1.09000 * 117.50050 * 107.49106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7271 -1.6928 -1.1195 6 8 1.7082 -0.2519 -2.4495 7 6 2.0400 -0.7211 1.2493 8 1 3.1222 -0.8357 1.1865 9 6 1.3858 -2.1010 1.3444 10 7 1.6994 0.0656 2.4422 11 6 2.2970 1.4059 2.3772 12 6 1.5852 2.3206 3.3406 13 1 0.7097 1.9727 3.8688 14 6 2.0516 3.6014 3.5476 15 7 3.1173 4.0252 2.9039 16 14 1.1649 4.7377 4.7358 17 1 1.7376 4.5756 6.0963 18 1 1.3319 6.1452 4.2928 19 1 -0.2799 4.3954 4.7630 20 6 2.1070 -0.6337 3.6680 21 6 1.0767 -1.5457 4.3371 22 6 1.4438 -0.2062 4.9790 23 1 -0.3633 -1.0271 0.0312 24 1 -0.3634 0.5407 0.8739 25 1 -0.3633 0.4865 -0.9052 26 1 2.0536 -0.7412 -3.2087 27 1 0.3023 -1.9877 1.3802 28 1 1.6605 -2.6942 0.4723 29 1 1.7287 -2.6040 2.2486 30 1 2.2001 1.7982 1.3648 31 1 3.3520 1.3467 2.6445 32 1 3.4457 4.9262 3.0499 33 1 3.1524 -0.9396 3.7092 34 1 0.0965 -1.6271 3.8674 35 1 1.4441 -2.4520 4.8184 36 1 2.0528 -0.2314 5.8826 37 1 0.7050 0.5938 4.9318 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086307355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:29 Heat of formation + Delta-G solvation = -80.404108 kcal Electronic energy + Delta-G solvation = -18402.901512 eV Core-core repulsion = 15566.475008 eV Total energy + Delta-G solvation = -2836.426504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61442 -39.64624 -37.23188 -36.38295 -35.01005 -32.94108 -30.73481 -28.01896 -26.45199 -24.19043 -23.92941 -22.99638 -21.51650 -20.00586 -19.10847 -18.46800 -17.67211 -16.95500 -16.68444 -16.27272 -16.00457 -15.42489 -15.24445 -14.50752 -14.32460 -13.80431 -13.55525 -13.37077 -13.05406 -12.98806 -12.78940 -12.62962 -12.51381 -12.34284 -12.30644 -12.01742 -11.70679 -11.57491 -11.31269 -11.18066 -10.92947 -10.62601 -10.42849 -9.03982 -8.11858 -6.18397 1.18204 1.44460 1.44878 1.55700 2.05168 2.45269 3.10533 3.20652 3.28610 3.68986 3.89377 4.21615 4.23233 4.31765 4.45762 4.47359 4.50526 4.69114 4.79820 4.92603 4.95888 4.99982 5.09576 5.14215 5.19100 5.27066 5.37138 5.42423 5.47879 5.53594 5.62607 5.81449 6.14639 6.43214 6.65100 6.97078 7.01729 7.49349 8.99048 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.008132 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.648322 B = 3442.445736 C = 4244.134930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 H 0.095 0.905 4 C 0.496 3.504 5 O -0.541 6.541 6 O -0.507 6.507 7 C 0.100 3.900 8 H 0.010 0.990 9 C -0.136 4.136 10 N -0.495 5.495 11 C 0.202 3.798 12 C -0.498 4.498 13 H 0.073 0.927 14 C -0.001 4.001 15 N -0.940 5.940 16 Si 0.960 3.040 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.261 1.261 20 C 0.000 4.000 21 C -0.141 4.141 22 C -0.163 4.163 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.427 0.573 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.017 0.983 31 H -0.045 1.045 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 -10.401 -4.682 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.104 4.104 3 H 0.113 0.887 4 C 0.339 3.661 5 O -0.432 6.432 6 O -0.320 6.320 7 C -0.008 4.008 8 H 0.028 0.972 9 C -0.193 4.193 10 N -0.220 5.220 11 C 0.076 3.924 12 C -0.536 4.536 13 H 0.091 0.909 14 C -0.198 4.198 15 N -0.581 5.581 16 Si 0.785 3.215 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.185 1.185 20 C -0.109 4.109 21 C -0.178 4.178 22 C -0.200 4.200 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.288 0.712 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.034 0.966 31 H -0.028 1.028 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.270 -10.249 -4.350 12.778 hybrid contribution 1.581 0.738 -0.084 1.747 sum -4.689 -9.511 -4.433 11.493 Atomic orbital electron populations 1.21644 0.89723 1.03315 1.03402 1.21105 1.00626 1.00053 0.88649 0.88675 1.23377 0.75881 0.81553 0.85260 1.90655 1.37260 1.27542 1.87699 1.84517 1.71888 1.58951 1.16671 1.21281 0.96005 0.94459 0.89102 0.97220 1.21936 1.01427 0.93736 1.02215 1.61905 1.58373 1.02092 0.99593 1.19530 0.91041 0.85493 0.96322 1.21500 1.11978 0.96602 1.23528 0.90914 1.25827 0.95874 0.99918 0.98147 1.70095 1.25257 1.18466 1.44318 0.85518 0.79420 0.77662 0.78853 1.20348 1.21463 1.18549 1.22069 0.94466 1.03582 0.90828 1.23092 0.99440 0.93505 1.01764 1.22991 1.03559 0.98701 0.94731 0.90731 0.91090 0.91024 0.71168 0.90667 0.92016 0.91819 0.96563 1.02750 0.93141 0.92447 0.88060 0.87194 0.89077 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 8.52 71.98 0.61 -2.94 16 2 C -0.09 -2.88 2.48 -11.54 -0.03 -2.91 16 3 H 0.10 3.74 5.72 -2.39 -0.01 3.72 16 4 C 0.50 15.08 7.36 71.23 0.52 15.60 16 5 O -0.54 -18.63 14.86 21.95 0.33 -18.30 16 6 O -0.51 -11.73 13.29 -51.37 -0.68 -12.41 16 7 C 0.10 3.69 1.48 44.92 0.07 3.76 16 8 H 0.01 0.41 7.87 -2.39 -0.02 0.39 16 9 C -0.14 -4.08 7.85 71.98 0.57 -3.52 16 10 N -0.49 -20.46 4.02 -850.41 -3.42 -23.87 16 11 C 0.20 10.40 4.61 85.56 0.39 10.80 16 12 C -0.50 -26.85 8.11 25.60 0.21 -26.65 16 13 H 0.07 3.80 5.68 -2.91 -0.02 3.78 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.94 -56.14 13.29 21.45 0.28 -55.85 16 16 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 20 C 0.00 -0.02 4.02 44.92 0.18 0.16 16 21 C -0.14 -4.10 8.61 30.59 0.26 -3.84 16 22 C -0.16 -5.81 9.43 30.60 0.29 -5.52 16 23 H 0.07 1.85 6.18 -2.39 -0.01 1.84 16 24 H 0.07 2.32 7.87 -2.39 -0.02 2.31 16 25 H 0.07 1.82 8.07 -2.39 -0.02 1.80 16 26 H 0.43 5.51 9.10 -74.06 -0.67 4.83 16 27 H 0.07 2.04 6.19 -2.39 -0.01 2.03 16 28 H 0.06 1.85 6.19 -2.39 -0.01 1.84 16 29 H 0.06 1.83 6.06 -2.39 -0.01 1.82 16 30 H 0.02 0.89 5.41 -2.39 -0.01 0.88 16 31 H -0.05 -2.68 8.01 -2.39 -0.02 -2.70 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.10 2.83 8.13 -2.39 -0.02 2.82 16 35 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.09 3.63 5.87 -2.39 -0.01 3.62 16 Total: -1.00 -65.65 293.36 2.48 -63.17 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.41 Total: 16.23 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.54 Total: -14.62 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -3.13 Total: -79.73 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.36 Total: -30.72 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.65 2.48 -63.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086307355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.237 kcal (2) G-P(sol) polarization free energy of solvation -65.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds