Wall clock time and date at job start Mon Mar 30 2020 03:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46972 * 2 1 4 4 C 1.50704 * 109.46745 * 119.99389 * 2 1 3 5 5 H 1.08000 * 119.99759 * 120.00076 * 4 2 1 6 6 C 1.37875 * 120.00281 * 299.99954 * 4 2 1 7 7 N 1.31515 * 119.99848 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00214 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46972 * 120.00472 * 8 6 4 11 11 H 1.48500 * 109.47009 * 240.00138 * 8 6 4 12 12 N 1.46898 * 109.47312 * 239.99217 * 2 1 3 13 13 C 1.46849 * 110.99539 * 60.00398 * 12 2 1 14 14 C 1.53070 * 109.50132 * 173.94818 * 13 12 2 15 15 C 1.53034 * 109.24587 * 58.90700 * 14 13 12 16 16 C 1.53031 * 109.58441 * 302.73383 * 15 14 13 17 17 C 1.46833 * 111.00175 * 295.72010 * 12 2 1 18 18 O 1.43275 * 109.65661 * 63.15089 * 15 14 13 19 19 C 1.44227 * 107.23480 * 119.19723 * 18 15 14 20 20 C 1.54925 * 103.07744 * 338.56124 * 19 18 15 21 21 O 1.43636 * 109.50078 * 182.60502 * 15 14 13 22 22 H 1.08993 * 109.47222 * 300.00494 * 1 2 3 23 23 H 1.08998 * 109.46484 * 60.00715 * 1 2 3 24 24 H 1.09000 * 109.46972 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00381 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.46830 * 53.94186 * 13 12 2 27 27 H 1.08996 * 109.45869 * 293.95160 * 13 12 2 28 28 H 1.08997 * 109.51431 * 298.97342 * 14 13 12 29 29 H 1.09005 * 109.54698 * 178.86101 * 14 13 12 30 30 H 1.08993 * 109.50727 * 177.18704 * 16 15 14 31 31 H 1.08993 * 109.50685 * 297.32711 * 16 15 14 32 32 H 1.09000 * 109.46943 * 306.05933 * 17 12 2 33 33 H 1.09003 * 109.46227 * 66.04411 * 17 12 2 34 34 H 1.09002 * 110.69202 * 96.95511 * 19 18 15 35 35 H 1.08996 * 110.69538 * 220.16187 * 19 18 15 36 36 H 1.08995 * 110.97349 * 277.39179 * 20 19 18 37 37 H 1.09000 * 111.00994 * 153.63078 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.1482 -2.2853 3.6041 10 1 3.1470 -0.1853 4.8162 11 1 1.1676 -1.5862 4.8166 12 7 2.0197 -0.6926 -1.1993 13 6 1.5489 -0.0268 -2.4206 14 6 2.1982 -0.6816 -3.6423 15 6 1.8360 -2.1682 -3.6700 16 6 2.2861 -2.8302 -2.3657 17 6 1.6343 -2.1094 -1.1830 18 8 0.4191 -2.3163 -3.8218 19 6 0.1941 -3.0381 -5.0501 20 6 1.5056 -2.8026 -5.8403 21 8 2.4920 -2.8009 -4.7801 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7080 1.1612 3.4843 26 1 1.8204 1.0283 -2.3868 27 1 0.4653 -0.1211 -2.4908 28 1 3.2809 -0.5718 -3.5819 29 1 1.8338 -0.2012 -4.5504 30 1 1.9833 -3.8772 -2.3656 31 1 3.3706 -2.7641 -2.2794 32 1 1.9676 -2.5659 -0.2511 33 1 0.5501 -2.1917 -1.2604 34 1 0.0492 -4.1000 -4.8518 35 1 -0.6593 -2.6257 -5.5884 36 1 1.4841 -1.8420 -6.3548 37 1 1.6897 -3.6152 -6.5431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097078995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:44 Heat of formation + Delta-G solvation = -81.627087 kcal Electronic energy + Delta-G solvation = -18691.526786 eV Core-core repulsion = 15855.047250 eV Total energy + Delta-G solvation = -2836.479536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64311 -37.64518 -34.86962 -33.68892 -31.63266 -30.43856 -29.13184 -27.23271 -25.25090 -23.47801 -22.89472 -22.53136 -20.33978 -18.73638 -17.05848 -16.45769 -16.10605 -15.53404 -15.09151 -14.45176 -14.12115 -13.99404 -13.57820 -13.38344 -12.90180 -12.71770 -12.45636 -12.08877 -11.64480 -11.60437 -11.36271 -11.03406 -10.92488 -10.79006 -10.56249 -10.50421 -10.22037 -10.10970 -9.93299 -9.62393 -9.16637 -8.75437 -8.35620 -7.05516 -5.97673 -4.01447 3.32372 3.40188 3.44614 3.49166 4.08443 4.44454 4.55173 4.81417 4.92520 5.05829 5.11875 5.25751 5.32260 5.34614 5.53429 5.72377 5.83832 5.92314 5.97466 6.06877 6.22573 6.28674 6.43034 6.56997 6.73045 6.79300 6.91768 6.96800 7.21383 7.29165 7.59583 7.79163 7.87467 8.16772 8.44786 8.66215 9.04843 9.63594 11.09482 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045924 B = 0.006265 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.560561 B = 4468.320691 C = 4659.015603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.128 4.128 15 C 0.258 3.742 16 C -0.116 4.116 17 C 0.068 3.932 18 O -0.370 6.370 19 C 0.019 3.981 20 C 0.015 3.985 21 O -0.375 6.375 22 H 0.086 0.914 23 H 0.009 0.991 24 H 0.028 0.972 25 H 0.259 0.741 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -6.019 -14.668 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.258 5.258 13 C -0.070 4.070 14 C -0.167 4.167 15 C 0.182 3.818 16 C -0.154 4.154 17 C -0.060 4.060 18 O -0.291 6.291 19 C -0.058 4.058 20 C -0.062 4.062 21 O -0.296 6.296 22 H 0.105 0.895 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.187 -5.877 -14.366 15.523 hybrid contribution -0.743 -0.420 0.605 1.046 sum -0.930 -6.298 -13.760 15.161 Atomic orbital electron populations 1.22379 1.00812 0.99307 1.00458 1.19283 0.89794 0.94591 0.85833 0.94213 1.21201 1.30535 1.12445 0.89776 0.91791 1.24931 0.95229 0.95117 0.98997 1.69903 1.37080 1.23102 1.23230 0.86483 0.78515 0.79673 0.82992 1.19742 1.21087 1.21209 1.62287 1.59580 1.01559 1.02327 1.21888 0.97283 0.97936 0.89888 1.22165 1.02390 0.93288 0.98824 1.23505 0.77151 0.93268 0.87900 1.21961 1.02121 0.98918 0.92406 1.21879 0.97305 0.89932 0.96923 1.88973 1.23058 1.76342 1.40765 1.24142 0.98421 0.97831 0.85405 1.24310 0.87267 1.02725 0.91862 1.89252 1.37066 1.80971 1.22274 0.89498 0.97210 0.95290 0.93107 0.91374 0.94577 0.89761 0.92060 0.91585 0.89895 0.89152 0.94895 0.90982 0.88729 0.90974 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.29 37.16 0.31 -3.94 16 2 C 0.21 5.40 2.41 -68.86 -0.17 5.24 16 3 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.50 -13.75 7.85 -34.44 -0.27 -14.02 16 5 H 0.06 1.75 6.39 -52.49 -0.34 1.41 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.53 -11.79 4.67 -228.05 -1.06 -12.86 16 13 C 0.06 1.14 4.76 -3.82 -0.02 1.12 16 14 C -0.13 -2.11 5.45 -26.68 -0.15 -2.26 16 15 C 0.26 4.22 1.03 -26.70 -0.03 4.19 16 16 C -0.12 -2.03 5.49 -26.68 -0.15 -2.18 16 17 C 0.07 1.40 4.62 -3.82 -0.02 1.39 16 18 O -0.37 -6.02 9.82 -59.03 -0.58 -6.59 16 19 C 0.02 0.21 8.08 38.17 0.31 0.52 16 20 C 0.02 0.16 7.92 38.17 0.30 0.46 16 21 O -0.38 -5.60 10.99 -59.03 -0.65 -6.25 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 23 H 0.01 0.21 6.54 -51.93 -0.34 -0.13 16 24 H 0.03 0.71 6.64 -51.93 -0.34 0.36 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 27 H 0.04 0.73 6.30 -51.93 -0.33 0.41 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.09 1.99 6.01 -51.93 -0.31 1.68 16 33 H 0.03 0.72 6.38 -51.93 -0.33 0.38 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 282.87 15.07 4.26 4.26 Total: -1.00 -29.79 282.87 -8.06 -37.85 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.67 Total: 0.15 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.03 Total: -7.96 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.44 Total: -37.86 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.23 Total: -12.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.79 -8.06 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.781 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds