Wall clock time and date at job start Mon Mar 30 2020 03:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46972 * 2 1 4 4 C 1.50704 * 109.46745 * 119.99389 * 2 1 3 5 5 H 1.08000 * 119.99759 * 120.00076 * 4 2 1 6 6 C 1.37875 * 120.00281 * 299.99954 * 4 2 1 7 7 N 1.31515 * 119.99848 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00214 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46972 * 120.00472 * 8 6 4 11 11 H 1.48500 * 109.47009 * 240.00138 * 8 6 4 12 12 N 1.46898 * 109.47312 * 239.99217 * 2 1 3 13 13 C 1.46849 * 110.99539 * 60.00398 * 12 2 1 14 14 C 1.53070 * 109.50132 * 173.94818 * 13 12 2 15 15 C 1.53034 * 109.24587 * 58.90700 * 14 13 12 16 16 C 1.53031 * 109.58441 * 302.73383 * 15 14 13 17 17 C 1.46833 * 111.00175 * 295.72010 * 12 2 1 18 18 O 1.43275 * 109.65661 * 63.15089 * 15 14 13 19 19 C 1.44227 * 107.23480 * 119.19723 * 18 15 14 20 20 C 1.54925 * 103.07744 * 338.56124 * 19 18 15 21 21 O 1.43636 * 109.50078 * 182.60502 * 15 14 13 22 22 H 1.08993 * 109.47222 * 300.00494 * 1 2 3 23 23 H 1.08998 * 109.46484 * 60.00715 * 1 2 3 24 24 H 1.09000 * 109.46972 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00381 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.46830 * 53.94186 * 13 12 2 27 27 H 1.08996 * 109.45869 * 293.95160 * 13 12 2 28 28 H 1.08997 * 109.51431 * 298.97342 * 14 13 12 29 29 H 1.09005 * 109.54698 * 178.86101 * 14 13 12 30 30 H 1.08993 * 109.50727 * 177.18704 * 16 15 14 31 31 H 1.08993 * 109.50685 * 297.32711 * 16 15 14 32 32 H 1.09000 * 109.46943 * 306.05933 * 17 12 2 33 33 H 1.09003 * 109.46227 * 66.04411 * 17 12 2 34 34 H 1.09002 * 110.69202 * 96.95511 * 19 18 15 35 35 H 1.08996 * 110.69538 * 220.16187 * 19 18 15 36 36 H 1.08995 * 110.97349 * 277.39179 * 20 19 18 37 37 H 1.09000 * 111.00994 * 153.63078 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.1482 -2.2853 3.6041 10 1 3.1470 -0.1853 4.8162 11 1 1.1676 -1.5862 4.8166 12 7 2.0197 -0.6926 -1.1993 13 6 1.5489 -0.0268 -2.4206 14 6 2.1982 -0.6816 -3.6423 15 6 1.8360 -2.1682 -3.6700 16 6 2.2861 -2.8302 -2.3657 17 6 1.6343 -2.1094 -1.1830 18 8 0.4191 -2.3163 -3.8218 19 6 0.1941 -3.0381 -5.0501 20 6 1.5056 -2.8026 -5.8403 21 8 2.4920 -2.8009 -4.7801 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7080 1.1612 3.4843 26 1 1.8204 1.0283 -2.3868 27 1 0.4653 -0.1211 -2.4908 28 1 3.2809 -0.5718 -3.5819 29 1 1.8338 -0.2012 -4.5504 30 1 1.9833 -3.8772 -2.3656 31 1 3.3706 -2.7641 -2.2794 32 1 1.9676 -2.5659 -0.2511 33 1 0.5501 -2.1917 -1.2604 34 1 0.0492 -4.1000 -4.8518 35 1 -0.6593 -2.6257 -5.5884 36 1 1.4841 -1.8420 -6.3548 37 1 1.6897 -3.6152 -6.5431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097078995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:44 Heat of formation + Delta-G solvation = -102.150552 kcal Electronic energy + Delta-G solvation = -18692.416750 eV Core-core repulsion = 15855.047250 eV Total energy + Delta-G solvation = -2837.369501 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.80804 -39.27845 -35.98384 -35.49932 -33.37557 -31.93827 -30.46021 -28.79026 -27.35377 -24.77269 -24.31122 -23.84758 -22.03397 -20.29843 -18.21889 -18.09087 -17.56675 -17.04071 -16.52930 -15.99405 -15.69570 -15.56202 -14.93042 -14.69005 -14.43582 -14.13854 -13.84678 -13.68549 -13.20303 -13.11469 -13.01111 -12.72367 -12.51092 -12.38877 -12.27146 -12.24800 -11.92661 -11.88452 -11.37946 -11.08214 -10.85255 -10.50533 -10.38211 -8.85507 -8.10064 -6.20968 1.42453 1.44168 1.56070 2.43695 2.48443 2.95379 3.19229 3.36834 3.67011 3.76890 3.82003 4.10037 4.24064 4.27510 4.40205 4.46729 4.60421 4.65629 4.68961 4.71448 4.81524 4.84756 4.91665 4.97616 5.02964 5.09801 5.10017 5.17990 5.31042 5.57113 5.73016 5.79843 6.18011 6.19560 6.47807 6.75708 6.92961 7.48210 8.96728 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045924 B = 0.006265 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.560561 B = 4468.320691 C = 4659.015603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.540 5.540 13 C 0.060 3.940 14 C -0.121 4.121 15 C 0.263 3.737 16 C -0.112 4.112 17 C 0.076 3.924 18 O -0.397 6.397 19 C 0.010 3.990 20 C 0.012 3.988 21 O -0.388 6.388 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.261 0.739 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.019 0.981 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 -7.178 -16.201 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 H 0.026 0.974 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.264 5.264 13 C -0.068 4.068 14 C -0.160 4.160 15 C 0.186 3.814 16 C -0.150 4.150 17 C -0.052 4.052 18 O -0.318 6.318 19 C -0.065 4.065 20 C -0.063 4.063 21 O -0.309 6.309 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.026 -7.048 -15.929 17.419 hybrid contribution -0.851 -0.068 0.981 1.301 sum -0.825 -7.116 -14.948 16.576 Atomic orbital electron populations 1.22161 1.00485 0.98777 0.99878 1.19056 0.89903 0.93134 0.87171 0.97361 1.21450 1.30639 1.12484 0.90863 0.92179 1.25710 0.95373 0.95795 1.01891 1.70026 1.37903 1.24255 1.23949 0.85472 0.78045 0.78659 0.79247 1.19122 1.20680 1.20716 1.62204 1.59712 1.02279 1.02193 1.21914 0.96931 0.98057 0.89902 1.22093 1.02074 0.93734 0.98064 1.23214 0.77628 0.92708 0.87855 1.21861 1.01679 0.99337 0.92096 1.21753 0.96631 0.89174 0.97683 1.88952 1.22671 1.77109 1.43114 1.24469 0.99780 0.98213 0.84059 1.24632 0.85704 1.04832 0.91148 1.89228 1.38079 1.80722 1.22824 0.91960 0.95737 0.95624 0.92984 0.91521 0.95534 0.89832 0.89651 0.90271 0.90043 0.91180 0.96248 0.90075 0.86299 0.89627 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.83 8.29 71.98 0.60 -7.24 16 2 C 0.21 11.27 2.41 44.17 0.11 11.38 16 3 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 4 C -0.52 -28.88 7.85 25.60 0.20 -28.68 16 5 H 0.06 3.34 6.39 -2.91 -0.02 3.32 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.78 11.32 21.45 0.24 -53.53 16 8 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 N -0.54 -24.16 4.67 -875.41 -4.09 -28.24 16 13 C 0.06 2.31 4.76 86.34 0.41 2.72 16 14 C -0.12 -3.79 5.45 30.63 0.17 -3.63 16 15 C 0.26 8.09 1.03 30.62 0.03 8.12 16 16 C -0.11 -3.80 5.49 30.63 0.17 -3.63 16 17 C 0.08 3.16 4.62 86.34 0.40 3.56 16 18 O -0.40 -12.09 9.82 -126.22 -1.24 -13.33 16 19 C 0.01 0.20 8.08 72.64 0.59 0.79 16 20 C 0.01 0.22 7.92 72.64 0.58 0.79 16 21 O -0.39 -10.45 10.99 -126.22 -1.39 -11.84 16 22 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 23 H 0.02 1.12 6.54 -2.39 -0.02 1.11 16 24 H 0.02 1.27 6.64 -2.39 -0.02 1.25 16 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 27 H 0.03 1.07 6.30 -2.39 -0.02 1.05 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.07 3.15 6.01 -2.39 -0.01 3.14 16 33 H 0.02 0.85 6.38 -2.39 -0.02 0.84 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.23 282.87 0.29 -63.93 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.05 Total: 11.49 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 3.69 Total: -14.77 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -3.84 Total: -81.77 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -2.63 Total: -25.17 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -64.23 0.29 -63.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.218 kcal (2) G-P(sol) polarization free energy of solvation -64.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds