Wall clock time and date at job start Mon Mar 30 2020 03:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99850 * 2 1 4 4 O 1.20830 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00219 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.27419 * 57.91012 * 5 3 2 7 7 C 1.55036 * 110.38188 * 295.81268 * 5 3 2 8 8 C 1.54933 * 102.71979 * 219.09739 * 7 5 3 9 9 N 1.48542 * 103.37395 * 37.40024 * 8 7 5 10 10 C 1.46896 * 110.99715 * 200.19592 * 9 8 7 11 11 H 1.08999 * 109.47475 * 55.09334 * 10 9 8 12 12 C 1.53001 * 109.47364 * 295.09028 * 10 9 8 13 13 C 1.50701 * 109.46908 * 175.09193 * 10 9 8 14 14 H 1.08001 * 120.00307 * 5.47258 * 13 10 9 15 15 C 1.37883 * 119.99972 * 185.47301 * 13 10 9 16 16 N 1.31509 * 120.00308 * 355.14957 * 15 13 10 17 17 Si 1.86799 * 119.99702 * 175.14590 * 15 13 10 18 18 H 1.48506 * 109.46915 * 94.99986 * 17 15 13 19 19 H 1.48501 * 109.47081 * 214.99699 * 17 15 13 20 20 H 1.48498 * 109.47353 * 335.00417 * 17 15 13 21 21 C 1.47898 * 105.81896 * 320.71006 * 9 8 7 22 22 H 1.09004 * 109.46712 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47103 * 299.99838 * 1 2 3 24 24 H 1.08997 * 109.47410 * 60.00332 * 1 2 3 25 25 H 1.08998 * 109.47623 * 182.09189 * 6 5 3 26 26 H 1.09001 * 109.47211 * 302.09468 * 6 5 3 27 27 H 1.09008 * 109.47236 * 62.08931 * 6 5 3 28 28 H 1.09006 * 110.90538 * 100.77296 * 7 5 3 29 29 H 1.09003 * 110.74080 * 337.35147 * 7 5 3 30 30 H 1.09001 * 110.66983 * 278.88557 * 8 7 5 31 31 H 1.08996 * 110.67244 * 155.91825 * 8 7 5 32 32 H 1.09002 * 109.46856 * 64.99278 * 12 10 9 33 33 H 1.09004 * 109.47248 * 184.99027 * 12 10 9 34 34 H 1.08999 * 109.47118 * 304.99195 * 12 10 9 35 35 H 0.96998 * 120.00286 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.91629 * 144.68285 * 21 9 8 37 37 H 1.09005 * 109.91950 * 265.78165 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1361 0.5411 -1.2150 7 6 4.1381 0.6716 1.3092 8 6 5.3076 1.6309 1.6446 9 7 4.7823 2.9636 1.2515 10 6 5.8773 3.9205 1.0435 11 1 6.5801 3.5158 0.3152 12 6 6.6007 4.1639 2.3695 13 6 5.3164 5.2220 0.5310 14 1 4.2475 5.3583 0.4591 15 6 6.1680 6.2387 0.1539 16 7 7.4648 6.1098 0.3303 17 14 5.4796 7.7993 -0.6077 18 1 5.2939 8.8257 0.4493 19 1 6.4259 8.3093 -1.6322 20 1 4.1716 7.5035 -1.2456 21 6 4.0244 2.7452 0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 5.2251 0.5744 -1.1819 26 1 3.8038 -0.4969 -1.2014 27 1 3.7854 1.0230 -2.1277 28 1 4.5056 -0.3410 1.1425 29 1 3.3886 0.6857 2.1006 30 1 6.1922 1.3783 1.0600 31 1 5.5326 1.6053 2.7108 32 1 7.0816 3.2417 2.6957 33 1 7.3551 4.9391 2.2349 34 1 5.8809 4.4844 3.1227 35 1 8.0639 6.8249 0.0646 36 1 3.1568 3.4044 -0.0279 37 1 4.6650 2.9375 -0.8602 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177063619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:49 Heat of formation + Delta-G solvation = -104.355532 kcal Electronic energy + Delta-G solvation = -18306.386281 eV Core-core repulsion = 15468.921165 eV Total energy + Delta-G solvation = -2837.465116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92714 -39.78091 -37.49769 -36.12048 -33.90998 -31.13616 -30.01732 -28.64602 -27.30873 -26.62212 -24.11148 -23.12512 -21.24867 -20.58025 -18.57713 -18.21434 -17.80953 -17.33476 -16.90789 -15.91575 -15.84054 -15.10772 -14.85713 -14.55657 -14.08581 -13.86701 -13.65130 -13.42270 -13.31911 -13.05190 -12.97600 -12.85989 -12.64450 -12.46426 -12.31185 -11.98051 -11.85873 -11.80081 -11.70413 -11.64753 -11.25962 -10.96602 -10.51203 -9.03231 -8.14920 -6.25349 1.14047 1.37915 1.39030 1.50644 1.69052 2.40305 3.13569 3.36633 3.38097 3.59909 3.89634 4.07353 4.32656 4.33555 4.34674 4.41596 4.67499 4.70787 4.74995 4.80469 4.86715 4.95917 4.97091 5.03743 5.05494 5.10430 5.19484 5.25446 5.36762 5.43915 5.70255 5.74006 6.20869 6.30594 6.64331 6.71817 6.88825 7.43841 8.91403 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.006938 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.268194 B = 4034.554377 C = 4586.250996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.480 3.520 4 O -0.537 6.537 5 C -0.066 4.066 6 C -0.130 4.130 7 C -0.090 4.090 8 C 0.030 3.970 9 N -0.527 5.527 10 C 0.210 3.790 11 H -0.025 1.025 12 C -0.116 4.116 13 C -0.522 4.522 14 H 0.045 0.955 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.067 3.933 22 H 0.139 0.861 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 -15.489 -1.066 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.324 3.676 4 O -0.426 6.426 5 C -0.068 4.068 6 C -0.187 4.187 7 C -0.128 4.128 8 C -0.098 4.098 9 N -0.252 5.252 10 C 0.103 3.897 11 H -0.007 1.007 12 C -0.175 4.175 13 C -0.560 4.560 14 H 0.064 0.936 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.200 1.200 21 C -0.062 4.062 22 H 0.157 0.843 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.603 -14.873 -0.690 17.196 hybrid contribution 0.139 1.244 -1.012 1.610 sum -8.465 -13.628 -1.702 16.133 Atomic orbital electron populations 1.23579 0.74988 1.05880 1.02278 1.86489 1.24745 1.31836 1.83641 1.23704 0.91920 0.81263 0.70757 1.90649 1.67580 1.37779 1.46604 1.21547 0.86719 0.97536 1.01004 1.21865 1.01848 1.01019 0.93936 1.22628 0.97025 0.99696 0.93465 1.23296 0.96323 0.88662 1.01475 1.64822 1.23982 1.07900 1.28487 1.19229 0.87295 0.90245 0.92911 1.00703 1.21576 0.99370 0.99583 0.96938 1.21352 0.92679 0.99607 1.42407 0.93643 1.25626 0.95156 1.01306 0.96209 1.70008 1.03020 1.34353 1.48119 0.85622 0.78158 0.79864 0.78491 1.20098 1.20251 1.20046 1.22597 0.98012 0.93095 0.92481 0.84288 0.92453 0.92243 0.90672 0.88528 0.92411 0.86379 0.90765 0.93947 0.89630 0.94790 0.92493 0.95102 0.92780 0.92121 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.35 -8.66 10.42 -51.43 -0.54 -9.19 16 3 C 0.48 15.35 6.49 71.23 0.46 15.81 16 4 O -0.54 -21.36 14.99 21.95 0.33 -21.03 16 5 C -0.07 -2.06 0.91 -51.90 -0.05 -2.10 16 6 C -0.13 -3.13 8.15 71.98 0.59 -2.55 16 7 C -0.09 -2.43 6.18 31.95 0.20 -2.23 16 8 C 0.03 1.03 5.62 86.65 0.49 1.51 16 9 N -0.53 -23.55 5.10 -862.23 -4.40 -27.95 16 10 C 0.21 11.00 1.69 44.17 0.07 11.07 16 11 H -0.02 -1.39 8.00 -2.39 -0.02 -1.41 16 12 C -0.12 -5.78 8.93 71.98 0.64 -5.14 16 13 C -0.52 -30.17 7.87 25.60 0.20 -29.97 16 14 H 0.05 2.73 7.31 -2.91 -0.02 2.70 16 15 C 0.02 0.92 5.35 84.66 0.45 1.37 16 16 N -0.92 -53.40 11.52 21.45 0.25 -53.15 16 17 Si 0.95 45.43 29.54 68.60 2.03 47.46 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 C 0.07 2.81 4.92 86.45 0.43 3.24 16 22 H 0.14 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 24 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 27 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.12 2.27 7.87 -2.38 -0.02 2.25 16 29 H 0.07 2.00 7.87 -2.39 -0.02 1.98 16 30 H 0.04 1.43 7.93 -2.39 -0.02 1.41 16 31 H 0.09 2.75 7.81 -2.39 -0.02 2.73 16 32 H 0.03 1.45 7.32 -2.39 -0.02 1.43 16 33 H 0.06 3.11 6.24 -2.38 -0.01 3.09 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.06 2.93 6.19 -2.39 -0.01 2.92 16 37 H 0.04 1.69 7.24 -2.38 -0.02 1.68 16 Total: -1.00 -68.59 298.53 3.38 -65.21 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.03 Total: 5.98 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.68 Total: -7.32 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -4.15 Total: -81.09 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.21 Total: -30.23 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.59 3.38 -65.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177063619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.150 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds