Wall clock time and date at job start Mon Mar 30 2020 03:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46946 * 2 1 4 4 C 1.50699 * 109.47518 * 119.99965 * 2 1 3 5 5 H 1.07993 * 120.00320 * 119.99786 * 4 2 1 6 6 C 1.37886 * 120.00055 * 300.00499 * 4 2 1 7 7 N 1.31510 * 119.99695 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99902 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47231 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46871 * 119.99998 * 8 6 4 11 11 H 1.48504 * 109.46724 * 239.99579 * 8 6 4 12 12 N 1.46892 * 109.47294 * 240.00279 * 2 1 3 13 13 C 1.47024 * 111.00090 * 183.52736 * 12 2 1 14 14 C 1.53097 * 109.38234 * 177.17254 * 13 12 2 15 15 O 1.43137 * 109.20236 * 57.36404 * 14 13 12 16 16 C 1.42299 * 113.81119 * 302.48464 * 15 14 13 17 17 C 1.53972 * 110.38170 * 179.38948 * 16 15 14 18 18 C 1.54618 * 104.01128 * 118.75032 * 17 16 15 19 19 O 1.44701 * 104.70930 * 336.29269 * 18 17 16 20 20 C 1.44553 * 105.46068 * 39.99124 * 19 18 17 21 21 C 1.47131 * 111.00363 * 59.99657 * 12 2 1 22 22 H 1.09002 * 109.46726 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46902 * 299.99616 * 1 2 3 24 24 H 1.08999 * 109.47635 * 60.00006 * 1 2 3 25 25 H 0.96998 * 120.00403 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.48548 * 297.13460 * 13 12 2 27 27 H 1.08993 * 109.48610 * 57.19707 * 13 12 2 28 28 H 1.09005 * 109.51274 * 177.28189 * 14 13 12 29 29 H 1.09005 * 109.51155 * 297.38877 * 14 13 12 30 30 H 1.09002 * 110.54485 * 237.42436 * 17 16 15 31 31 H 1.08997 * 110.54113 * 0.08185 * 17 16 15 32 32 H 1.09000 * 110.36240 * 95.02912 * 18 17 16 33 33 H 1.08997 * 110.36461 * 217.35427 * 18 17 16 34 34 H 1.08995 * 110.39189 * 201.26056 * 20 19 18 35 35 H 1.09003 * 110.48571 * 78.92270 * 20 19 18 36 36 H 1.08999 * 109.49950 * 61.31651 * 21 12 2 37 37 H 1.09003 * 109.49980 * 301.22176 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1467 -2.2869 3.6037 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5867 4.8161 12 7 2.0196 -0.6924 -1.1994 13 6 3.4869 -0.7856 -1.1919 14 6 3.9523 -1.5733 -2.4194 15 8 3.4666 -0.9310 -3.6028 16 6 2.0510 -0.7917 -3.6411 17 6 1.6170 -0.0800 -4.9357 18 6 0.7232 -1.1185 -5.6521 19 8 1.1499 -2.3967 -5.1248 20 6 1.3787 -2.1748 -3.7148 21 6 1.5479 -0.0253 -2.4230 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.7094 1.1617 3.4844 26 1 3.9150 0.2165 -1.2193 27 1 3.8141 -1.2965 -0.2864 28 1 5.0417 -1.6024 -2.4418 29 1 3.5618 -2.5897 -2.3692 30 1 1.0477 0.8203 -4.7048 31 1 2.4854 0.1641 -5.5475 32 1 -0.3263 -0.9426 -5.4162 33 1 0.8828 -1.0774 -6.7295 34 1 2.0411 -2.9411 -3.3124 35 1 0.4337 -2.1673 -3.1716 36 1 1.9303 0.9950 -2.4517 37 1 0.4580 -0.0060 -2.4298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184578866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:33 Heat of formation + Delta-G solvation = -77.904708 kcal Electronic energy + Delta-G solvation = -18707.023688 eV Core-core repulsion = 15870.705566 eV Total energy + Delta-G solvation = -2836.318122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.29789 -37.63483 -35.68729 -32.74966 -32.17555 -29.74019 -29.27041 -27.00088 -25.70239 -24.13766 -23.14603 -21.60649 -19.89567 -19.10126 -16.78189 -16.51366 -15.97619 -15.56478 -15.18591 -14.70902 -14.43763 -14.11481 -13.72050 -13.38603 -13.17898 -12.58452 -12.49395 -11.72175 -11.68923 -11.45333 -11.24662 -11.06676 -10.99298 -10.86144 -10.62928 -10.44031 -10.27508 -10.04262 -9.90840 -9.54540 -9.08728 -8.85840 -8.49369 -7.33342 -6.08183 -4.13319 3.25326 3.33562 3.37220 3.94121 4.09849 4.33378 4.60164 4.90492 4.99124 5.11576 5.15361 5.24590 5.44062 5.61426 5.65762 5.68071 5.76197 5.83684 5.89962 5.95605 6.02996 6.14174 6.29527 6.45965 6.57206 6.74848 6.85411 6.96414 7.03012 7.40633 7.53213 7.60664 7.74605 8.06824 8.21978 8.47254 8.92549 9.52193 10.98727 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039754 B = 0.006649 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.160689 B = 4210.247039 C = 4482.888288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.529 5.529 13 C 0.027 3.973 14 C 0.058 3.942 15 O -0.374 6.374 16 C 0.093 3.907 17 C -0.144 4.144 18 C 0.047 3.953 19 O -0.379 6.379 20 C 0.036 3.964 21 C 0.033 3.967 22 H 0.035 0.965 23 H 0.086 0.914 24 H 0.007 0.993 25 H 0.261 0.739 26 H 0.030 0.970 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -1.974 -11.678 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.255 5.255 13 C -0.102 4.102 14 C -0.019 4.019 15 O -0.293 6.293 16 C 0.052 3.948 17 C -0.182 4.182 18 C -0.030 4.030 19 O -0.298 6.298 20 C -0.041 4.041 21 C -0.096 4.096 22 H 0.054 0.946 23 H 0.105 0.895 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.908 -2.471 -11.775 12.066 hybrid contribution 0.433 0.635 1.335 1.540 sum 1.341 -1.836 -10.440 10.685 Atomic orbital electron populations 1.21839 0.97569 0.99697 0.99966 1.19273 0.92396 0.92037 0.85633 0.98319 1.21153 1.31224 1.12349 0.89684 0.91784 1.24938 0.95126 0.95041 0.99090 1.69893 1.36826 1.22979 1.23437 0.86453 0.78624 0.79595 0.82818 1.19712 1.21115 1.20971 1.62459 1.08225 1.52585 1.02249 1.22623 0.89818 0.99156 0.98576 1.22846 0.98561 0.96087 0.84372 1.87855 1.19935 1.80299 1.41218 1.22383 0.82376 0.94970 0.95032 1.22894 1.00660 0.98974 0.95661 1.23443 0.97443 0.83158 0.98914 1.89146 1.88092 1.30163 1.22437 1.23890 1.00706 0.97462 0.82033 1.22624 1.00953 0.95501 0.90518 0.94594 0.89516 0.97406 0.92951 0.95204 0.88490 0.89046 0.92529 0.89559 0.89495 0.92186 0.89189 0.88495 0.90820 0.94917 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.74 37.16 0.32 -2.83 16 2 C 0.21 5.23 2.06 -68.87 -0.14 5.09 16 3 H 0.00 -0.02 8.14 -51.92 -0.42 -0.44 16 4 C -0.51 -13.45 7.90 -34.44 -0.27 -13.72 16 5 H 0.06 1.69 6.43 -52.49 -0.34 1.35 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.08 4.40 -228.03 -1.00 -12.08 16 13 C 0.03 0.52 5.35 -3.71 -0.02 0.50 16 14 C 0.06 0.94 6.74 37.21 0.25 1.19 16 15 O -0.37 -6.48 10.23 -35.23 -0.36 -6.84 16 16 C 0.09 1.50 1.04 -89.89 -0.09 1.41 16 17 C -0.14 -1.89 6.52 -25.37 -0.17 -2.05 16 18 C 0.05 0.58 7.67 38.01 0.29 0.87 16 19 O -0.38 -5.97 11.66 -35.23 -0.41 -6.38 16 20 C 0.04 0.57 6.55 37.66 0.25 0.82 16 21 C 0.03 0.60 3.69 -3.98 -0.01 0.59 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 24 H 0.01 0.15 6.38 -51.93 -0.33 -0.18 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 1.97 6.17 -51.93 -0.32 1.65 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16 30 H 0.09 1.01 7.71 -51.93 -0.40 0.61 16 31 H 0.09 1.12 7.99 -51.93 -0.41 0.70 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.58 6.16 -51.93 -0.32 1.26 16 35 H 0.07 1.19 7.75 -51.93 -0.40 0.79 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.49 6.12 -51.93 -0.32 1.18 16 LS Contribution 282.50 15.07 4.26 4.26 Total: -1.00 -28.84 282.50 -7.19 -36.02 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.59 Total: 0.14 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 0.31 Total: -6.62 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.38 Total: -36.46 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.77 Total: -13.22 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.84 -7.19 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184578866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.882 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds