Wall clock time and date at job start Mon Mar 30 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46651 * 2 1 4 4 C 1.42906 * 113.99786 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.84659 * 339.66422 * 4 3 2 6 6 C 1.53769 * 113.61681 * 110.86452 * 4 3 2 7 7 C 1.53783 * 87.08482 * 139.98078 * 6 4 3 8 8 H 1.08999 * 113.61336 * 89.19474 * 7 6 4 9 9 N 1.46498 * 113.61339 * 220.01950 * 7 6 4 10 10 C 1.34775 * 120.00017 * 255.48976 * 9 7 6 11 11 O 1.21688 * 119.99881 * 0.02562 * 10 9 7 12 12 C 1.46372 * 120.00032 * 180.02562 * 10 9 7 13 13 H 1.07999 * 120.00064 * 353.93781 * 12 10 9 14 14 C 1.40053 * 119.99857 * 173.93909 * 12 10 9 15 15 N 1.30667 * 119.99968 * 6.15467 * 14 12 10 16 16 Si 1.86807 * 119.99797 * 186.15029 * 14 12 10 17 17 H 1.48496 * 109.46853 * 94.98794 * 16 14 12 18 18 H 1.48497 * 109.46867 * 214.98581 * 16 14 12 19 19 H 1.48496 * 109.47178 * 334.98115 * 16 14 12 20 20 C 1.53780 * 113.61036 * 208.47334 * 4 3 2 21 21 C 1.52995 * 113.61920 * 334.56357 * 20 4 3 22 22 C 1.53004 * 113.61336 * 105.47161 * 20 4 3 23 23 H 1.08993 * 109.46869 * 299.99937 * 1 2 3 24 24 H 1.09001 * 109.47145 * 59.99804 * 1 2 3 25 25 H 1.09003 * 109.46947 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47602 * 119.99909 * 2 1 3 27 27 H 1.08996 * 109.47083 * 240.00797 * 2 1 3 28 28 H 1.09005 * 113.61743 * 254.52964 * 6 4 3 29 29 H 1.09002 * 113.61506 * 25.43197 * 6 4 3 30 30 H 0.96999 * 120.00299 * 75.49529 * 9 7 6 31 31 H 0.97004 * 119.99967 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.47085 * 79.50277 * 21 20 4 33 33 H 1.08999 * 109.47282 * 199.50888 * 21 20 4 34 34 H 1.09005 * 109.47129 * 319.50949 * 21 20 4 35 35 H 1.08993 * 109.47378 * 40.49132 * 22 20 4 36 36 H 1.09005 * 109.46752 * 160.49241 * 22 20 4 37 37 H 1.09001 * 109.46932 * 280.48977 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4603 -0.0006 5 1 3.9273 0.5547 0.3481 6 6 4.0048 2.0093 -1.3173 7 6 4.9906 2.8191 -0.4585 8 1 5.9150 2.2864 -0.2355 9 7 5.2224 4.1778 -0.9550 10 6 6.3722 4.4753 -1.5922 11 8 7.2174 3.6153 -1.7556 12 6 6.6041 5.8329 -2.0878 13 1 5.8171 6.5703 -2.0309 14 6 7.8466 6.1756 -2.6357 15 7 8.7573 5.2561 -2.8155 16 14 8.2016 7.9474 -3.1097 17 1 8.9046 8.6273 -1.9923 18 1 9.0585 7.9731 -4.3222 19 1 6.9241 8.6499 -3.3914 20 6 3.9473 2.7436 0.6712 21 6 2.9388 3.8940 0.6520 22 6 4.5565 2.5085 2.0549 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 4.4851 1.2501 -1.9346 29 1 3.3020 2.6278 -1.8756 30 1 4.5486 4.8632 -0.8251 31 1 9.6181 5.4936 -3.1946 32 1 2.2030 3.7453 1.4423 33 1 3.4605 4.8372 0.8140 34 1 2.4344 3.9189 -0.3140 35 1 5.1492 1.5940 2.0404 36 1 5.1953 3.3515 2.3185 37 1 3.7588 2.4129 2.7915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228995731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:29 Heat of formation + Delta-G solvation = -78.293714 kcal Electronic energy + Delta-G solvation = -17827.607224 eV Core-core repulsion = 14991.272234 eV Total energy + Delta-G solvation = -2836.334990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00095 -37.18981 -36.06273 -32.58580 -31.66806 -31.00052 -29.94402 -27.19565 -26.37675 -23.52575 -22.70806 -22.11883 -19.72551 -18.25852 -16.97141 -16.70009 -15.61210 -15.32079 -15.00833 -14.41236 -14.27470 -13.59379 -13.17072 -13.00703 -12.71925 -12.42831 -12.27644 -12.21630 -11.84362 -11.81748 -11.44931 -11.21380 -11.18328 -11.10052 -10.91903 -10.45907 -10.36074 -10.29624 -10.13992 -9.89494 -9.09726 -8.82407 -7.57301 -7.42116 -6.16782 -4.60778 3.15633 3.22819 3.26458 3.77007 4.14212 4.58031 4.71340 4.85609 4.95071 5.02424 5.10503 5.21054 5.32829 5.35491 5.51891 5.55736 5.66218 5.82975 5.87758 5.92193 5.94523 6.02543 6.10119 6.14038 6.26103 6.32153 6.38873 6.51956 6.71477 6.79707 7.44107 7.46317 7.97776 8.16372 8.38353 9.05449 9.58740 10.62904 10.81964 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044030 B = 0.005019 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.775114 B = 5577.105831 C = 5599.412001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.071 3.929 5 H 0.083 0.917 6 C -0.170 4.170 7 C 0.152 3.848 8 H 0.102 0.898 9 N -0.751 5.751 10 C 0.555 3.445 11 O -0.582 6.582 12 C -0.547 4.547 13 H 0.067 0.933 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.907 3.093 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.134 4.134 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.382 0.618 31 H 0.267 0.733 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 -6.445 6.881 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.013 3.987 5 H 0.101 0.899 6 C -0.210 4.210 7 C 0.044 3.956 8 H 0.120 0.880 9 N -0.405 5.405 10 C 0.359 3.641 11 O -0.465 6.465 12 C -0.584 4.584 13 H 0.086 0.914 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.094 4.094 21 C -0.174 4.174 22 C -0.191 4.191 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.215 0.785 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.977 -6.956 6.683 15.378 hybrid contribution 0.022 0.849 -0.215 0.876 sum -11.954 -6.107 6.468 14.901 Atomic orbital electron populations 1.21731 0.94175 1.01833 1.02982 1.22448 0.95255 0.84758 0.99720 1.87940 1.21001 1.25318 1.94656 1.23702 0.80393 0.97161 0.97474 0.89937 1.24003 0.99485 1.00488 0.96977 1.21740 0.95495 0.86736 0.91588 0.88024 1.46052 1.21928 1.09004 1.63480 1.18241 0.79219 0.89378 0.77241 1.90585 1.44819 1.50029 1.61099 1.20901 0.99279 0.95610 1.42591 0.91446 1.25696 0.95732 0.98213 0.93476 1.70029 1.04439 1.33205 1.32015 0.86380 0.78965 0.83158 0.78373 1.19831 1.20493 1.18891 1.22602 0.96338 0.95089 0.95336 1.21312 0.97392 0.96487 1.02203 1.21711 1.00155 1.01780 0.95448 0.92035 0.91929 0.91515 0.93785 0.93635 0.91656 0.89441 0.78467 0.92182 0.92651 0.92281 0.92024 0.92795 0.91998 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.61 6.50 37.16 0.24 0.85 16 3 O -0.37 -5.22 9.50 -35.23 -0.33 -5.55 16 4 C 0.07 1.04 3.72 -25.93 -0.10 0.94 16 5 H 0.08 1.10 7.75 -51.93 -0.40 0.70 16 6 C -0.17 -2.96 7.36 -25.92 -0.19 -3.15 16 7 C 0.15 2.97 3.66 -67.02 -0.25 2.73 16 8 H 0.10 2.21 7.49 -51.93 -0.39 1.82 16 9 N -0.75 -17.01 5.26 -54.33 -0.29 -17.30 16 10 C 0.56 15.92 7.74 -12.99 -0.10 15.82 16 11 O -0.58 -18.94 14.68 5.20 0.08 -18.86 16 12 C -0.55 -15.61 9.53 -35.63 -0.34 -15.95 16 13 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 14 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 15 N -0.77 -23.22 11.85 55.55 0.66 -22.56 16 16 Si 0.91 20.31 29.56 -169.99 -5.03 15.28 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 20 C -0.09 -1.43 1.35 -153.60 -0.21 -1.64 16 21 C -0.12 -1.70 7.32 37.15 0.27 -1.42 16 22 C -0.13 -1.85 9.17 37.16 0.34 -1.51 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.57 7.64 -51.93 -0.40 1.17 16 30 H 0.38 7.78 6.66 -40.82 -0.27 7.51 16 31 H 0.27 7.32 8.29 -40.82 -0.34 6.99 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.86 7.24 -51.93 -0.38 0.48 16 34 H 0.06 0.93 7.26 -51.93 -0.38 0.55 16 35 H 0.05 0.71 8.01 -51.93 -0.42 0.29 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -33.58 305.77 -6.32 -39.90 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.98 Total: 6.40 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.04 Total: -1.92 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.37 Total: -39.85 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.26 Total: -24.41 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.58 -6.32 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228995731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.396 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds