Wall clock time and date at job start Mon Mar 30 2020 04:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.46964 * 2 1 4 4 C 1.34232 * 116.99647 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99503 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.47015 * 319.97778 * 6 4 3 8 8 C 1.53053 * 109.46310 * 79.88604 * 6 4 3 9 9 C 1.53117 * 109.27507 * 179.13078 * 8 6 4 10 10 H 1.09004 * 109.52739 * 62.37134 * 9 8 6 11 11 C 1.50692 * 109.52340 * 182.50212 * 9 8 6 12 12 H 1.08003 * 120.00182 * 94.42764 * 11 9 8 13 13 C 1.37886 * 120.00090 * 274.42850 * 11 9 8 14 14 N 1.31515 * 119.99622 * 6.46002 * 13 11 9 15 15 Si 1.86796 * 120.00178 * 186.45759 * 13 11 9 16 16 H 1.48506 * 109.47262 * 270.00186 * 15 13 11 17 17 H 1.48500 * 109.47172 * 30.00105 * 15 13 11 18 18 H 1.48493 * 109.47200 * 150.00140 * 15 13 11 19 19 C 1.53126 * 109.21208 * 302.43894 * 9 8 6 20 20 C 1.53031 * 109.27904 * 57.62029 * 19 9 8 21 21 N 1.46838 * 109.52763 * 300.82362 * 20 19 9 22 22 C 1.46902 * 111.00384 * 185.83748 * 21 20 19 23 23 H 1.08999 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47688 * 300.00072 * 1 2 3 25 25 H 1.09008 * 109.46920 * 60.00141 * 1 2 3 26 26 H 1.08995 * 109.47216 * 240.00061 * 2 1 3 27 27 H 1.08999 * 109.47191 * 119.99790 * 2 1 3 28 28 H 1.08993 * 109.45100 * 59.21843 * 8 6 4 29 29 H 1.08998 * 109.54981 * 299.09894 * 8 6 4 30 30 H 0.97003 * 120.00194 * 355.05775 * 14 13 11 31 31 H 1.08998 * 109.50198 * 177.56556 * 19 9 8 32 32 H 1.08997 * 109.49820 * 297.63952 * 19 9 8 33 33 H 1.09004 * 109.46198 * 60.83930 * 20 19 9 34 34 H 1.09001 * 109.46090 * 180.80235 * 20 19 9 35 35 H 1.09001 * 109.46801 * 56.04289 * 22 21 20 36 36 H 1.08999 * 109.47102 * 176.04259 * 22 21 20 37 37 H 1.08996 * 109.47296 * 296.04782 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0012 7 1 3.3320 3.5737 -0.6620 8 6 3.8819 3.5059 1.4193 9 6 4.4877 4.9121 1.4177 10 1 3.8883 5.5664 0.7845 11 6 4.5086 5.4532 2.8239 12 1 5.3944 5.3429 3.4319 13 6 3.3968 6.0891 3.3346 14 7 2.2776 6.1123 2.6443 15 14 3.4801 6.9174 5.0068 16 1 3.1003 5.9432 6.0613 17 1 4.8634 7.3985 5.2524 18 1 2.5430 8.0689 5.0360 19 6 5.9177 4.8441 0.8743 20 6 5.8961 4.2373 -0.5304 21 7 5.3098 2.8922 -0.4751 22 6 5.3990 2.2249 -1.7808 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.4581 2.8622 2.0838 29 1 2.8491 3.5550 1.7645 30 1 2.2537 5.7455 1.7466 31 1 6.3385 5.8486 0.8305 32 1 6.5270 4.2226 1.5305 33 1 5.2981 4.8673 -1.1890 34 1 6.9142 4.1743 -0.9145 35 1 6.4390 2.2011 -2.1063 36 1 5.0219 1.2059 -1.6945 37 1 4.8024 2.7726 -2.5103 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238267067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:16 Heat of formation + Delta-G solvation = -95.132546 kcal Electronic energy + Delta-G solvation = -18272.377265 eV Core-core repulsion = 15435.312088 eV Total energy + Delta-G solvation = -2837.065177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45815 -38.23517 -36.21403 -34.15475 -31.86102 -31.32304 -30.49715 -26.80274 -24.34896 -24.03095 -22.67157 -21.90776 -20.44115 -19.06699 -17.54874 -16.85036 -16.30146 -15.84597 -14.79084 -14.67003 -14.08198 -14.02285 -13.72212 -13.47944 -12.88443 -12.76376 -12.53730 -12.29542 -11.98957 -11.59155 -11.54560 -11.49721 -10.97324 -10.79367 -10.70791 -10.48667 -10.34895 -10.19155 -10.11353 -9.56320 -9.24875 -8.55073 -8.27172 -7.98045 -6.36878 -4.07155 2.52024 2.82300 3.44036 3.47314 3.62930 4.27448 4.52605 4.91148 4.94069 5.05168 5.26903 5.31580 5.40229 5.52606 5.58666 5.62544 5.70716 5.77783 5.85224 5.92579 5.97943 6.10230 6.12427 6.38637 6.43749 6.67367 6.78999 6.82507 6.94261 7.23616 7.37430 7.45627 7.60848 8.12309 8.21807 8.44935 8.87151 9.64295 11.02241 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.007877 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.138264 B = 3553.991148 C = 4622.136933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.501 6.501 6 C 0.095 3.905 7 H 0.066 0.934 8 C -0.093 4.093 9 C 0.034 3.966 10 H 0.030 0.970 11 C -0.591 4.591 12 H 0.051 0.949 13 C 0.020 3.980 14 N -0.911 5.911 15 Si 1.069 2.931 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.285 1.285 19 C -0.104 4.104 20 C 0.060 3.940 21 N -0.521 5.521 22 C 0.012 3.988 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.270 0.730 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -7.981 -7.516 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.312 3.688 5 O -0.388 6.388 6 C -0.014 4.014 7 H 0.084 0.916 8 C -0.131 4.131 9 C 0.015 3.985 10 H 0.048 0.952 11 C -0.629 4.629 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.547 5.547 15 Si 0.897 3.103 16 H -0.215 1.215 17 H -0.214 1.214 18 H -0.211 1.211 19 C -0.142 4.142 20 C -0.067 4.067 21 N -0.247 5.247 22 C -0.136 4.136 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.568 -7.759 -6.056 9.859 hybrid contribution 0.467 -0.670 -1.789 1.966 sum -0.102 -8.429 -7.844 11.515 Atomic orbital electron populations 1.21797 0.92768 1.02604 1.03751 1.22959 0.95326 0.80775 1.02214 1.86568 1.24896 1.31812 1.84075 1.23903 0.80179 0.92913 0.71816 1.90574 1.60183 1.43037 1.44978 1.21555 0.88894 0.88549 1.02428 0.91612 1.21953 1.02337 0.99775 0.89051 1.18885 0.91243 0.90863 0.97461 0.95222 1.21924 1.02493 1.39674 0.98805 0.93061 1.25833 0.92189 0.95418 1.05025 1.70778 1.26293 1.45330 1.12252 0.83546 0.75388 0.76660 0.74671 1.21530 1.21434 1.21050 1.21672 1.00315 0.99019 0.93194 1.22238 0.98183 0.87022 0.99270 1.61665 1.16141 1.20324 1.26594 1.22595 1.01771 1.00140 0.89102 0.90507 0.91193 0.91584 0.91677 0.91350 0.91983 0.91258 0.91841 0.92214 0.92161 0.95310 0.91251 0.91335 0.90371 0.96404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.36 -6.25 10.22 -39.26 -0.40 -6.65 16 4 C 0.47 8.97 6.39 36.00 0.23 9.20 16 5 O -0.50 -10.14 14.27 -18.75 -0.27 -10.40 16 6 C 0.10 1.88 2.35 -68.86 -0.16 1.72 16 7 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 8 C -0.09 -2.11 4.55 -26.64 -0.12 -2.23 16 9 C 0.03 0.83 1.79 -91.65 -0.16 0.66 16 10 H 0.03 0.76 6.96 -51.93 -0.36 0.40 16 11 C -0.59 -16.09 8.32 -34.44 -0.29 -16.38 16 12 H 0.05 1.41 7.82 -52.48 -0.41 1.00 16 13 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 14 N -0.91 -26.64 13.63 55.43 0.76 -25.88 16 15 Si 1.07 24.81 29.91 -169.99 -5.08 19.73 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.10 -2.15 5.36 -26.65 -0.14 -2.29 16 20 C 0.06 1.06 5.46 -3.84 -0.02 1.04 16 21 N -0.52 -9.69 4.51 -236.32 -1.07 -10.76 16 22 C 0.01 0.19 9.10 60.07 0.55 0.74 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 27 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 28 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.70 7.73 -51.93 -0.40 1.30 16 30 H 0.27 7.82 6.32 -40.82 -0.26 7.56 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.08 1.30 5.62 -51.93 -0.29 1.01 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -30.26 299.28 -7.17 -37.43 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.01 Total: -0.72 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 0.39 Total: -7.25 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.31 Total: -36.64 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.67 Total: -17.05 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.26 -7.17 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238267067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.705 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds