Wall clock time and date at job start Mon Mar 30 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47144 * 2 1 4 4 C 1.34229 * 117.00131 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99897 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00112 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.46167 * 39.96992 * 6 4 3 8 8 C 1.53036 * 109.45676 * 279.99466 * 6 4 3 9 9 C 1.53127 * 109.27466 * 180.80321 * 8 6 4 10 10 H 1.08999 * 109.52435 * 297.68667 * 9 8 6 11 11 C 1.50706 * 109.51986 * 177.56068 * 9 8 6 12 12 H 1.07999 * 120.00196 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00338 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99426 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47555 * 90.00165 * 15 13 11 17 17 H 1.48503 * 109.46814 * 210.00053 * 15 13 11 18 18 H 1.48496 * 109.47318 * 329.99545 * 15 13 11 19 19 C 1.53112 * 109.15883 * 57.65891 * 9 8 6 20 20 C 1.53041 * 109.27717 * 302.34402 * 19 9 8 21 21 N 1.46839 * 109.46314 * 159.94624 * 6 4 3 22 22 C 1.46898 * 111.00046 * 305.84979 * 21 6 4 23 23 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46804 * 299.99503 * 1 2 3 25 25 H 1.08990 * 109.47111 * 60.00262 * 1 2 3 26 26 H 1.09000 * 109.47297 * 239.99907 * 2 1 3 27 27 H 1.09003 * 109.47367 * 119.99891 * 2 1 3 28 28 H 1.09000 * 109.50481 * 60.87061 * 8 6 4 29 29 H 1.08996 * 109.53928 * 300.76578 * 8 6 4 30 30 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.50678 * 62.28697 * 19 9 8 32 32 H 1.09005 * 109.50652 * 182.40544 * 19 9 8 33 33 H 1.09003 * 109.46276 * 299.16225 * 20 19 9 34 34 H 1.09007 * 109.45992 * 179.19846 * 20 19 9 35 35 H 1.09002 * 109.47308 * 60.00121 * 22 21 6 36 36 H 1.08998 * 109.47681 * 180.02562 * 22 21 6 37 37 H 1.08995 * 109.47350 * 300.00571 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.3321 3.5736 0.6608 8 6 3.8835 3.5050 -1.4207 9 6 4.4880 4.9120 -1.4189 10 1 3.8875 5.5656 -0.7862 11 6 4.5089 5.4528 -2.8254 12 1 4.1289 4.8540 -3.6400 13 6 5.0132 6.7121 -3.0722 14 7 5.4754 7.4415 -2.0803 15 14 5.0384 7.3828 -4.8155 16 1 3.7712 8.1084 -5.0852 17 1 6.1848 8.3140 -4.9710 18 1 5.1797 6.2593 -5.7762 19 6 5.9178 4.8439 -0.8756 20 6 5.8961 4.2373 0.5293 21 7 5.3098 2.8922 0.4741 22 6 5.3990 2.2251 1.7798 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.8509 3.5531 -1.7664 29 1 4.4603 2.8620 -2.0854 30 1 5.8298 8.3275 -2.2540 31 1 6.5270 4.2218 -1.5312 32 1 6.3387 5.8484 -0.8318 33 1 5.2981 4.8674 1.1878 34 1 6.9143 4.1743 0.9134 35 1 5.0260 1.2046 1.6927 36 1 6.4383 2.2057 2.1078 37 1 4.7987 2.7703 2.5081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238796390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:24 Heat of formation + Delta-G solvation = -89.849451 kcal Electronic energy + Delta-G solvation = -18143.054308 eV Core-core repulsion = 15306.218223 eV Total energy + Delta-G solvation = -2836.836085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45945 -38.10626 -36.20754 -33.88161 -31.95820 -31.33719 -30.23680 -27.07412 -24.29806 -24.20322 -22.62307 -21.75197 -20.34385 -18.78536 -17.49638 -16.56293 -16.36142 -15.69569 -14.78311 -14.53340 -14.42855 -13.98802 -13.74364 -13.12487 -12.85367 -12.59592 -12.44005 -12.32655 -12.03852 -11.60724 -11.54597 -11.36961 -10.97037 -10.78008 -10.54298 -10.53247 -10.38997 -10.12470 -10.00333 -9.51528 -9.07006 -8.78868 -8.32812 -7.84819 -6.00412 -4.05758 2.50390 2.79821 3.31296 3.38212 3.42080 4.39584 4.44121 4.87770 4.88451 5.01604 5.21919 5.30481 5.47857 5.58736 5.64597 5.66918 5.71224 5.76621 5.90189 6.06081 6.14501 6.20407 6.44339 6.48623 6.59502 6.68231 6.92638 7.07699 7.31442 7.45916 7.54372 7.77956 7.96338 8.09178 8.11505 8.41836 8.96828 9.58852 11.06104 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.006588 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.649446 B = 4249.007935 C = 5036.787703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.498 6.498 6 C 0.100 3.900 7 H 0.067 0.933 8 C -0.094 4.094 9 C 0.051 3.949 10 H 0.026 0.974 11 C -0.511 4.511 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.109 4.109 20 C 0.059 3.941 21 N -0.522 5.522 22 C 0.012 3.988 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.260 0.740 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -10.018 6.475 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.310 3.690 5 O -0.384 6.384 6 C -0.010 4.010 7 H 0.085 0.915 8 C -0.132 4.132 9 C 0.033 3.967 10 H 0.044 0.956 11 C -0.549 4.549 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.147 4.147 20 C -0.067 4.067 21 N -0.248 5.248 22 C -0.136 4.136 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -5.250 -10.435 6.172 13.212 hybrid contribution -0.368 0.648 -0.249 0.785 sum -5.618 -9.787 5.923 12.745 Atomic orbital electron populations 1.21793 0.92829 1.02634 1.03618 1.22955 0.95232 0.80849 1.02303 1.86547 1.25069 1.31788 1.84234 1.23989 0.80070 0.93053 0.71873 1.90584 1.60145 1.43040 1.44641 1.21416 0.89523 0.88199 1.01836 0.91499 1.21754 1.01309 1.00140 0.90039 1.18698 0.92286 0.88828 0.96895 0.95552 1.21129 1.40565 1.00326 0.92904 0.92563 1.24944 0.95183 0.96827 0.96913 1.69865 1.41703 1.10769 1.30689 0.86596 0.77523 0.78856 0.85043 1.20753 1.21265 1.19920 1.21743 1.00489 1.01347 0.91136 1.22352 0.97672 0.86045 1.00670 1.61749 1.15493 1.21245 1.26361 1.22587 1.01766 0.99909 0.89356 0.90522 0.91590 0.91312 0.91343 0.91633 0.91919 0.91651 0.92995 0.93393 0.88456 0.95475 0.91687 0.90643 0.91376 0.96526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.72 10.22 -39.25 -0.40 -6.12 16 4 C 0.47 8.43 6.39 36.01 0.23 8.66 16 5 O -0.50 -9.73 14.27 -18.75 -0.27 -10.00 16 6 C 0.10 1.90 2.35 -68.88 -0.16 1.73 16 7 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 8 C -0.09 -2.01 4.58 -26.65 -0.12 -2.13 16 9 C 0.05 1.25 2.16 -91.65 -0.20 1.05 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.51 -13.77 8.56 -34.44 -0.29 -14.06 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 14 N -0.89 -24.81 11.37 55.43 0.63 -24.18 16 15 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.11 -2.53 5.12 -26.65 -0.14 -2.67 16 20 C 0.06 1.16 5.46 -3.83 -0.02 1.13 16 21 N -0.52 -9.97 4.51 -236.33 -1.07 -11.03 16 22 C 0.01 0.19 9.10 60.06 0.55 0.74 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 2.48 6.17 -51.93 -0.32 2.16 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.07 1.26 5.63 -51.93 -0.29 0.97 16 36 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -29.01 298.47 -7.33 -36.35 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.07 Total: -1.57 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 0.36 Total: -3.96 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.44 Total: -35.21 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.67 Total: -16.12 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.01 -7.33 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238796390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.503 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds