Wall clock time and date at job start Mon Mar 30 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99748 * 2 1 4 4 O 1.20819 * 120.00702 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99744 * 179.97438 * 3 2 1 6 6 C 1.53000 * 110.35523 * 302.14261 * 5 3 2 7 7 C 1.55035 * 110.45054 * 64.46424 * 5 3 2 8 8 C 1.54944 * 102.99673 * 140.69210 * 7 5 3 9 9 N 1.48536 * 103.22295 * 322.65310 * 8 7 5 10 10 C 1.46903 * 110.99834 * 159.72503 * 9 8 7 11 11 H 1.09004 * 109.46792 * 297.59930 * 10 9 8 12 12 C 1.53000 * 109.47254 * 177.60493 * 10 9 8 13 13 C 1.50700 * 109.47093 * 57.59839 * 10 9 8 14 14 H 1.07995 * 120.00328 * 35.01101 * 13 10 9 15 15 C 1.37879 * 119.99753 * 214.99973 * 13 10 9 16 16 N 1.31509 * 119.99913 * 184.89885 * 15 13 10 17 17 Si 1.86804 * 120.00295 * 4.90742 * 15 13 10 18 18 H 1.48501 * 109.47216 * 84.79309 * 17 15 13 19 19 H 1.48500 * 109.47190 * 204.79660 * 17 15 13 20 20 H 1.48501 * 109.46736 * 324.79578 * 17 15 13 21 21 C 1.47899 * 105.82265 * 39.20572 * 9 8 7 22 22 H 1.08998 * 109.46971 * 299.99718 * 1 2 3 23 23 H 1.09008 * 109.46952 * 59.99942 * 1 2 3 24 24 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47310 * 297.86170 * 6 5 3 26 26 H 1.09003 * 109.46708 * 57.85890 * 6 5 3 27 27 H 1.08996 * 109.46946 * 177.85627 * 6 5 3 28 28 H 1.08996 * 110.63390 * 22.33458 * 7 5 3 29 29 H 1.09000 * 110.74703 * 259.09707 * 7 5 3 30 30 H 1.09000 * 110.66563 * 204.21703 * 8 7 5 31 31 H 1.08999 * 110.80828 * 81.15412 * 8 7 5 32 32 H 1.08995 * 109.47012 * 55.14818 * 12 10 9 33 33 H 1.09000 * 109.47047 * 175.15463 * 12 10 9 34 34 H 1.08997 * 109.46639 * 295.15362 * 12 10 9 35 35 H 0.96998 * 120.00212 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.91452 * 94.02191 * 21 9 8 37 37 H 1.08991 * 109.92159 * 215.11554 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1372 0.5408 1.2156 7 6 4.1405 0.6776 -1.3098 8 6 5.3083 1.6381 -1.6481 9 7 4.7799 2.9684 -1.2512 10 6 5.8725 3.9280 -1.0427 11 1 6.5064 3.5847 -0.2250 12 6 5.2882 5.2984 -0.6943 13 6 6.6926 4.0369 -2.3023 14 1 6.2130 3.9626 -3.2671 15 6 8.0553 4.2317 -2.2230 16 7 8.7570 4.4230 -3.3187 17 14 8.9048 4.2236 -0.5594 18 1 9.2212 2.8254 -0.1719 19 1 10.1611 5.0110 -0.6412 20 1 8.0072 4.8279 0.4576 21 6 4.0244 2.7451 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.7873 1.0225 2.1286 26 1 3.8048 -0.4972 1.2021 27 1 5.2261 0.5741 1.1815 28 1 3.3893 0.6906 -2.0994 29 1 4.5095 -0.3345 -1.1436 30 1 5.5289 1.6146 -2.7153 31 1 6.1961 1.3879 -1.0674 32 1 4.6262 5.2030 0.1663 33 1 6.0975 5.9884 -0.4556 34 1 4.7246 5.6800 -1.5456 35 1 9.7157 4.5597 -3.2630 36 1 4.6668 2.9339 0.8606 37 1 3.1571 3.4043 0.0334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246463837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:52 Heat of formation + Delta-G solvation = -83.163283 kcal Electronic energy + Delta-G solvation = -18333.718718 eV Core-core repulsion = 15497.172567 eV Total energy + Delta-G solvation = -2836.546151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74293 -38.44188 -36.33679 -34.41573 -32.06394 -30.26459 -28.29428 -27.75229 -26.08951 -24.87783 -22.89096 -21.28973 -19.63054 -19.19239 -17.26350 -16.95859 -16.70974 -16.26808 -15.14995 -14.49161 -13.97306 -13.81112 -13.43907 -13.26875 -12.68173 -12.62843 -12.53306 -12.13545 -12.11388 -11.97945 -11.65477 -11.36904 -11.03795 -10.81467 -10.71061 -10.66190 -10.44408 -10.36813 -10.12079 -10.01683 -9.75158 -9.06037 -8.58785 -7.40740 -6.09678 -4.08504 2.30960 2.73071 3.23140 3.33121 3.34302 4.37850 4.58540 4.70879 4.75686 5.01669 5.07136 5.10523 5.18495 5.29509 5.41876 5.54624 5.63935 5.76136 5.93831 5.99639 6.09352 6.14635 6.31637 6.43792 6.47093 6.53300 6.60522 6.65080 6.82156 6.90727 7.27743 7.58816 7.83175 7.94638 7.98846 8.63824 9.01407 9.53896 11.03460 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040713 B = 0.006401 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.580783 B = 4373.006822 C = 4428.588258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.477 3.523 4 O -0.501 6.501 5 C -0.066 4.066 6 C -0.136 4.136 7 C -0.109 4.109 8 C 0.057 3.943 9 N -0.504 5.504 10 C 0.171 3.829 11 H 0.003 0.997 12 C -0.132 4.132 13 C -0.501 4.501 14 H 0.081 0.919 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.042 3.958 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.023 0.977 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.264 0.736 36 H 0.045 0.955 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 -10.095 8.730 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.387 6.387 5 C -0.068 4.068 6 C -0.194 4.194 7 C -0.147 4.147 8 C -0.071 4.071 9 N -0.229 5.229 10 C 0.064 3.936 11 H 0.021 0.979 12 C -0.190 4.190 13 C -0.540 4.540 14 H 0.099 0.901 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.698 3.302 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.086 4.086 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.637 -9.511 8.252 17.146 hybrid contribution 0.895 -0.178 1.512 1.766 sum -10.742 -9.689 9.764 17.453 Atomic orbital electron populations 1.23232 0.76931 1.03358 1.02468 1.86518 1.22927 1.33723 1.84300 1.23653 0.91778 0.81047 0.71542 1.90631 1.66827 1.36305 1.44955 1.21533 0.86496 0.99576 0.99156 1.21875 1.01904 1.00172 0.95403 1.22733 0.98895 0.99111 0.94006 1.22945 0.93915 0.87727 1.02472 1.64970 1.24726 1.07665 1.25499 1.19936 0.88103 0.89044 0.96469 0.97919 1.21914 0.99300 0.98695 0.99078 1.20888 0.91321 1.49178 0.92602 0.90094 1.24987 0.97303 0.94652 0.95975 1.69887 1.07224 1.49021 1.27353 0.86976 0.79262 0.78440 0.85572 1.20315 1.21374 1.19104 1.23060 0.99810 0.91822 0.93937 0.92134 0.91935 0.88331 0.92224 0.91292 0.90865 0.90803 0.90324 0.89146 0.94045 0.95835 0.93639 0.92611 0.92611 0.93673 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.66 10.43 -39.25 -0.41 -5.07 16 3 C 0.48 7.39 6.49 36.01 0.23 7.63 16 4 O -0.50 -9.06 14.99 -18.74 -0.28 -9.34 16 5 C -0.07 -1.00 0.91 -154.06 -0.14 -1.15 16 6 C -0.14 -1.68 8.16 37.16 0.30 -1.38 16 7 C -0.11 -1.66 6.17 -24.63 -0.15 -1.81 16 8 C 0.06 1.10 5.72 -1.89 -0.01 1.09 16 9 N -0.50 -10.72 5.10 -223.88 -1.14 -11.86 16 10 C 0.17 4.08 1.43 -68.86 -0.10 3.98 16 11 H 0.00 0.08 5.11 -51.93 -0.27 -0.19 16 12 C -0.13 -2.93 9.24 37.16 0.34 -2.59 16 13 C -0.50 -13.84 8.03 -34.44 -0.28 -14.11 16 14 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 17 Si 0.87 21.19 26.99 -169.99 -4.59 16.60 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.27 6.82 56.52 0.39 -5.89 16 21 C 0.04 0.77 4.75 -2.75 -0.01 0.76 16 22 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 23 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 29 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 30 H 0.09 1.85 7.95 -51.93 -0.41 1.44 16 31 H 0.04 0.81 8.02 -51.93 -0.42 0.39 16 32 H 0.02 0.46 7.17 -51.93 -0.37 0.09 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.05 0.81 7.19 -51.93 -0.37 0.43 16 37 H 0.09 1.80 6.37 -51.93 -0.33 1.47 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -31.16 298.37 -5.93 -37.09 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.94 Total: -1.52 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 1.16 Total: -4.23 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.37 Total: -38.02 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.69 Total: -14.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.59 Total: 16.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.16 -5.93 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246463837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.072 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds